Rearranged Oriloc output example: Previous Index Next




Bacteria; Firmicutes; Mollicutes; Mycoplasmataceae; Mycoplasma.
Genome size (bp): 920079
Number of genes 663
Oriloc predictions: Origin NA Terminus NA
Worning et al., 2006: Origin 511 kb Terminus 787 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 534.263 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): NA
Consensus predictions: Origin NA Terminus NA
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward60NA114
GC-skew reverse552NA636
AT-skew forward62NA125
AT-skew reverse430NA302
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)60 (113.937 kb) NA0.043
61 (119.5225 kb)323 (920.079 kb) NA-0.083
GC-skew reverse 324 (0 kb)552 (635.995 kb) NA0.071
553 (638.17 kb)663 (920.079 kb) NA0.021
AT-skew forward 1 (0 kb)62 (124.7705 kb) NA-0.035
63 (126.018 kb)323 (920.079 kb) NA-0.06
AT-skew reverse 324 (0 kb)430 (302.469 kb) NA0.012
431 (305.9335 kb)663 (920.079 kb) NA0.056