Rearranged Oriloc output example: Previous Index Next
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.
Genome size (bp): 3188609
Number of genes 3022
Oriloc predictions: Origin 3028 kb Terminus 1434 kb
Worning et al., 2006: Origin 3005 kb Terminus 1429 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 3004.996 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 3111.46 kb
Consensus predictions: Origin 3028 kb Terminus 1434 kb
Significant breakpoints (p-value <0.05):
| Breakpoints | P-value | Chromosome coordinate (kb) | |
| GC-skew forward | 753 | 0.00667 | 1555 |
| GC-skew reverse | 2113 | 0 | 1446 |
| AT-skew reverse | 2431 | 0.04 | 2062 |
| From (index/coord) | To (index/coord) | Strand | Slope | |
| GC-skew forward | 1 (0 kb) | 753 (1555.3225 kb) | leading | -0.045 |
| 754 (1567.0265 kb) | 1444 (3188.117 kb) | lagging | -0.085 | |
| GC-skew reverse | 1445 (0 kb) | 2113 (1446.353 kb) | leading | 0.084 |
| 2114 (1448.488 kb) | 3022 (3188.117 kb) | lagging | 0.027 | |
| AT-skew reverse | 1445 (0 kb) | 2431 (2061.721 kb) | NA | 0.35 |
| 2432 (2063.162 kb) | 3022 (3188.117 kb) | lagging | 0.4 |