Rearranged Oriloc output example: Previous Index Next




Bacteria; Firmicutes; Lactobacillales; Lactobacillaceae; Lactobacillus.
Genome size (bp): 1884661
Number of genes 1879
Oriloc predictions: Origin 0 kb Terminus 904 kb
Worning et al., 2006: Origin 0 kb Terminus 922 kb
Position of the first peak in DnaA box distribution (Mackiewicz et al., 2004): 500.443 kb
Position(s) of the dnaA gene(s) (Mackiewicz et al., 2004): 0.88 kb, 1368.77 kb
Consensus predictions: Origin 0 kb Terminus 904 kb
Significant breakpoints (p-value <0.05):
Breakpoints P-value Chromosome coordinate (kb)
GC-skew forward724NA909
GC-skew reverse1158NA893
Segments:
From (index/coord) To (index/coord) StrandSlope
GC-skew forward 1 (0 kb)724 (909.183 kb) leading0.054
725 (911.3305 kb)973 (1884.299 kb) lagging-0.295
GC-skew reverse 974 (0 kb)1158 (892.8165 kb) leading0.292
1159 (901.43 kb)1879 (1884.299 kb) lagging-0.042
More G than C on the leading strand for replication.