PBIL

Local Alignment Tool

BBE contribution to PBIL in Lyon, France

Sequence 1:
Origin:
Sequence name (or bank ID/AC):
Strand: Direct Reverse
If user entered, paste raw sequence below:

Sequence 2:
Origin:
Sequence name (or bank ID/AC):
Strand: Direct Reverse
If user entered, paste raw sequence below:

LFasta parameters:
Number of alignments:
Penalty for the first residue in a gap:
Penalty for additional residues in a gap:

This form allows you to perform pairwise local alignments with LFasta and to visualize them with LalnView. You may use your own sequences or sequences from the EMBL, GenBank or Hovergen data banks. When using sequences from the banks, you may enter either the sequence name or the sequence accession number (for example HUMINS01 or J00265). Note that you can use the ExPASy server to align protein sequences with a similar tool.

If you have problems or comments...

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