|
RepeatMasker Results
|
Check Current Queue Status
Checking for E. coli insertion elements
identifying simple repeats
identifying matches to /usr/local/rmserver/share/Libraries/gallus.lib sequences
identifying more simple repeats
identifying low complexity regions
processing output:
cycle 1
cycle 2
cycle 3
cycle 4
done
Repeat Annotations:
SW perc perc perc query position in query matching repeat position in repeat
score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID
192 7.7 0.0 0.0 poulet2 2047 2072 (8614) + (T)n Simple_repeat 1 26 (0) 1
21 3.6 0.0 0.0 poulet2 3940 3967 (6719) + AT_rich Low_complexity 1 28 (0) 2
33 0.0 0.0 0.0 poulet2 4819 4851 (5835) + AT_rich Low_complexity 1 33 (0) 3
228 6.7 0.0 0.0 poulet2 9207 9236 (1450) + (TA)n Simple_repeat 2 31 (0) 4
Masked Sequence:
>poulet2
CGGGGTGAGGCGCTCGGCGCTGCGCTCCTCAGGCCTTGAGCCATCGCCCC
ATGGGCGGGAAGGCGGCGCTGGGCGGGATCAGCCAATGGCCGCGCTCCGC
CCCGCCCCCCCCGTCCCGTGCGGCTAAGGGAGCGAGCGGCGCGCGCCGCG
GCCGTCCGTCAGTGAGAGCCGTCCGTGAGGGCCCGCAGCGCCGCCGCCAT
GGCCGAGTGAGTGCGGGCGTCGGGCTTCCCTCAGGTGGGGCCGGGAGGGG
GCTGTGCTCGGCTGCCTCCGGGGATGGCCGTGAAGCCAGGATGCGCTGCC
CGCCTCAGGGAGCGGCCCCACCGAGCGGTGCCGGGGCGGCCTTCCGCCGT
GCGTTTGAGGCGGCTCCGGCGGCGCTCCCGGCCTCCCCCCCCCGCCGCCA
GGAACGCGGTTCCCCCCGTGTGGAACGCGACAGCTCCGGGAGGGGGGAGG
AGGGCGGGAAGGGCGCCGCCGCTGCGGGGAGCCGGGCGCTGGGTCAGCCC
GATGACGGCCCGCGGCCTCTGCCCGGGTTCGCGCCCAGAGCCGAGCCGGG
TCCCGGAGCAGAAGCGGAATGGCGCCTGGTGGGACGGAGGCCGCCGGTTC
CCGAGGGCGGAACGTCCGAGTAGGGCATGGTGTAGGCCGGGTCGCTGCTG
GTGCCTGACGTGTGTGGTTCTCCCCCTTCCCAGAGCTGATATTGCGTTGA
TCGGACTGGCCGTGATGGGTCAGAACCTGATTCTGAACATGAACGATCAC
GGCTTCGTGGTAAGTGAAAGAAAATGTCGTGCAGAAGGGCTGACTCAGTA
GCTCCTCGGCCGGAGCTTTGCGTTTGGTTTTTCTCCTTGTGATGCCCTAA
TGGGTGGTGTTTCCTCCTTTTAATCGTAACCCCCGCTGCCCTTTGCCCTG
TTCCCAGAGAAATGCAGCCTGGCGTGCCTGTACTTGGTCAGCTACCTGGA
GCCGTGGCTGTCTATAAGTGTGCTTTTTCTCTTAAGTTTGCTTTGGGCTT
GGCCATTGACAAAAGGCTCTTGCAATAACATGCTACAGGGCTCATCCCTA
CTCAGCATCTTTGGGTGGAACGCATAATGTTGAGCTTTGTTTATGTAACC
TGTAGCCTGAGCTCGAGTAACCTTTCAGCTGTCAGCTTTATTAACTTGTT
TTCTTGCTCCTCCAGGTCTGCGCTTTTAACAGGACGGTTTCCAAAGTGGA
TGACTTTCTGGCCAATGAGGCCAAAGGAACCAAAGTGATCGGTGCTCACA
GCCTGGAGGAGATGGTCTCGAAGCTGAAGAAGCCTCGACGCATCATCTTG
CTGGTGAAGGCTGGAAGTGCAGTGGATGATTTCATCAATAAATTAGTGAG
GCAGATGTTCTTTCTAACTGTGACTTCTCTGTCTCTTGGGGAAGTTTCCT
CTGAAAGATCTCAATTGTTTGTCAGTACTGAATCTTTGAGTCCGGACGAA
ACGCTGATTTATTTTTTGCAGGTGCCGTTGTTGGAGACTGGAGACATCAT
AATTGATGGTGGGAATTCTGAGTATAGAGATACCACGGTAAGCCTGTTTC
TTACCCAAAATGGATGGATAAAATACACTTCCTGTGATTCTTTCTCCTCT
GATCATGAGAACAGTTAGCCAATAAGATACCATCTTCCCTTGGGAAGGCC
AAACTGAGTTCTCATTGCAGAACTAGATTATACAGTCTATTAAAAAACAG
TTTTGGCAATAGTTAAGGATTGTTCTGTAAGTATGTCTTATAGAAATTTC
TTAGATTGCCAAAGATTATTTTTATTGACATCTTTTTAGATGTTGAAGGC
TCTTAGAAAACATCTTGTTACAGTCTTAAGGAGTTTTCATGGAGATTAGA
ACATCTGAGGATATTTACTGAATTGGTTAGGACATGCCAGGGTCCTGAAA
TGCAGGTTCTGGAGTGGCGTGGACAATATTGCATTAGCTATTGTGTCTCT
GTCCTACGGGACTGCTGGAAAATGCAATAAGACAGAGTAGCTGCTTTGGC
TGTCTTGGTAACAAAAGCAGGACAGCAGTGATCTGGTTCTTCAATCNNNN
NNNNNNNNNNNNNNNNNNNNNNAAGGCCTATGTATGAGCAAACTGTTCCT
TAGTGTGTCTGGGATGACTGTTAAAAATGTTGCAAGTAATTTAGTATTTC
TGCATGTTAGAGGGGGTAATGCTATCAGCCCTTCTGCTTTTGCATTCTTA
TCTTAGATAAGTGAGTTGGGCAATCAGAGTGAAAAACAGGTCTTAAATGA
GGTTTAATACTTGGAGAGCTTGCAGCTCTGCTTATGAATCTGAGGCTGTG
TTTCTCTCCCACTCAAAGGGAATTAATTTCCCATACAGTTATCCATGATT
GCACCTTTGCTCCATAACGAAATCAGCAACTTGGGCTTATTCTGCCTACC
TCATATCTCAGCACACAGCCTGTGTCACCTGGCACTTAATCCTGAGATGT
TTCCAGCCTCAGTACTGCACTTTTCTACCTGTTGGTTATGAGGAATTTGT
TCTCTCAGCATGACGCTTTTGCAAGGATCTGCGTCAGAGCAGCACTGAGT
TTCCTAATGTTCACTTTTGAGTATGCACGAGCATTGTCTGAAGTTGTTTG
GTAGCATGTCTAAAGCAGAACTGAAAACCTGGTTTCAGATCTGGTTTACT
AACCTTTGTTTGTAAGGCTCTGGTATTAAAAGATATGTAAATGACTTTTT
GTTGTTCCAGAGACGCTGTAAGGAGCTGCTGCAAAAAGGCCTCTTATTTG
TTGGAAGTGGTGTTAGTGGTGGAGAGGAGGGGGCCAGATATGGTCCTTCA
CTCATGCCAGGAGGATCCAAAGAAGCCTGGTAAGTGTGAGCTGGTAGATT
CTTCAGACTGGTCTGCAACAATCATTAGTTCATGCTGAGAGCTGAAGGAA
GGAAGGAGGAGGGGTGTGGGTGTGGAGAGAACAAGATATGTTGCCATCTT
ACTTCCTCAAGGTTCAGTATTTCTCAACCTAGCTGGAGTCACCAGCCAGT
GCCAAATTTTTTATAGCAAGAAAAACTAAGTCAGGTTTTTCTTTCTGGAA
TTCACAGGTAAAAGTAATACCCACAGAAATCTAGATGGAGAAATATATGG
GAGGGAGAAAGTACTTCTTTTGGAATTTAAGCAAAATTCCTGTGTGTTGA
TTATGAACCTCTGGATCACCTTGGATTTTTCTTGTAGGGAACACAATGTG
ACTTTGCTTCAGCTCTGCCACTGATGCTCTTGGAGTATGAGCTTATATCA
TTACCAACCTTAGTTTCCCCATCTGTAAAATGGAGAAAGTAATACTTGAA
CACCTTCAGGTCCATTAGGCTTGACTGCACAGTACTTTTAAATGTATAAC
ATGGTCTGTCCCCTTTTCTTGCAAGCAGTGTCTAGTTCTGGGGAAAACAT
ACTCTATTTTGTGACACTACTGCGTGATGTGTTGTCAGCCTGCCTGCATG
CCCTCATCCCATTCCTACAGGAGGATGCATCATACAGATGGATTTTTCTC
TTGTGGTGGTTGTGTCCTCTTCTTACCTGCTGAGCCATGTTATTTCTATC
CACAGGCCACATATCAAGACCATATTTCAAAGCATTGCTGCTAAAGTGGG
ATCTGGGGAACCTTGTTGTGACTGGGTAAATATTAATTTGGTACTGCCCT
TAGCCTGTGTAGGTAGCTCATGCATAAAATGCTGTGAAAGCTATCCACGT
TGCTCTGTGGGTTTTCTGGCTGCCTGCCTTCAGTTCAGATTGACCAACTC
TGATATGTTACCCAATCCCGTAGGAGAAAAATGTTTTATGGCTGGGTCAT
GGTGGGGAAGCAAAGCAGATCTGTGATTACAGCGACAGTGTTTTCTGTTA
GCGCTGGGCTTGTGAAGCTTTAATGGACAGAAGGAATCCATAGATAGGTA
TCAAATACTGAAAATGGTGACAGCAATATTACTGATGGCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGTATTTCTTGACAGGTAGGAGAGGAGGGTGCCG
GACACTTTGTGAAGATGGTGCACAATGGGATTGAATATGGAGACATGCAG
TTGATCTGTGAGGCCTACCACCTGATGAAAGATGTTGTGGGCATGGACCA
CGATGAGATGTCACAGGTGATTTGCAGTTTTTTGGTGTTCTCCTTTCCTG
AGCCATGCTGGCTGGCTGCACTTGATAGAGGCAGCTGGGCTTGGTTAAAG
CTGTTGTATGTGGGTAAAGTTAATTTTTCTGGCTTGTGCACCTTTGGCCA
AGGCCAGATGCACAATGTGCCTGAACTCCAAATAGCCGTGAGGTAGGGAG
CAGCAAGCACTTACACCTGAATGTTTACAGGTGTTGTCTAAATTCTTCTG
TTCTACAGCTGATTTCTCCTTAGGAAGCAACATCTTGCCTGGCAAAAGCT
AGTAAAATTAGTAACTGACCTAATACGAACTCCTTCTGCAAGCATACATA
TGCATCTGTGTTTATATGTACATCAGTGAATCAGTAGATACGTGTTAGAT
AACATACTGAATTGGTGTGTACTATCTATCTGTCTGCATGTACTTTTTCT
CCTCTTTCAGGTATTTGAAGAATGGAATAACACTGAACTGGACTCTTTCC
TGATTGAAATCACAGCCAATATTCTCAAATTCAAAGATAAGGATGGCAAA
TACCTCCTCCCAAAGATCAGGGACAGTGCAGGACAAAAAGGCACGGGGAA
GTGGACGGCAATTTCTGCCCTGGAATATGGAGTCCCTGTCACTCTCATAG
GTAAATGGCTCTTTGATCGAGCCTTGTCTTTCCTACCTGCACATGGCATA
TCACACTAAGGAGCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGGCAGTGGGGAAATCCAAAACTTTGTTGGTTGACCACTGCTTGGTAAGT
TCTTGTTTTTCAGATGTCTCCTTAAACATTTCCTTCTCCTGTTTTTATGA
ATAACTGCAAACAGACAAAAATGCAGGGACTGGACTGTGCTGGTTTTGTG
CCTAGTAAGGCTGCTCATCACAACTCAGAGAAGATGGAATGTATTTTGTC
ATTCCTTAAGATTATATTCCTAAGAGATAGAAGAATGTACCTGCTCGCAT
GCAGCCCTAGTGCTGTGGTGTCTACACTTCCATCCAGCCTTGTGACACAG
GAGTTGTAATACATTCGCAACACTTTTAGAAGAACCTCTTAACCACAGGG
CTGGTGTAGGCTTTCCCTTTGAGTAAATAAGATGACTCAGCAGTTTCTTT
GCTCTCAGGTTGGCTTTATTTGTCTTGCTTTCTCCCCTCTTCTTCTGTTG
CCTGAATGTTCAAGTCGCGTTCCCTTAGAAGATAAACTGTATTCAGTGTC
CTGAAATGAGTAACTGGAGTGATAGCCTTGAGAGAAATGTGGCTGCACTG
CAACAATGTATTTTTACAAAGCAAGCTTTGTAAATGGTTTTAATGTTCTG
CCACAGTTACAGGCTGTCAGTTGTGGGCATGAAAAACAGTTTCTCATTTG
GGCTGTTGCGATGTTCCTCGGTTTAGTGTTCGTGCAAAGACTGGGAGTGG
AGAAGACACTCCCTGATTGGTGCTGCCCAGCGCCCGGGTGCACTGTTAGG
TAACGATCAGTGGATAAGGAAGTACTACACACAACAGTCCTGCAAACATG
GCCATTCTTAGGGCAGTTTCTGTGTGACTTTATTGCATAAGCATGACTTG
CAGTCTCCTTGTGAAGGCAGAGTCATGCTACCTCTGCTTTTTCCCAATGC
CCTTCCCTTCCTCCCACCTTTTCCTCCTCAGCAGTAGAAGGAAGTTTTTG
CAGAAATGGAGAGGCGTGTGTTCTGATTTTGATGCAGTCTGTTAATCCCA
CAGCAGGGAGGATCCAGAGTCCTCTACAGATGTGACTCATTCTTCTCTGC
TTTTTTTTTTTTTGTAATTCACAACTGTTTTTAAGGAGGAAGAAGAGTTC
AGTATGAAAGCTTTCTTTTTCTTTTTAATCACTTTTAAATTTCCTTCTTA
ATTGCTTTCCCCCTATCAGACTCTGGAAAGAAAACAATTTTTATTTTTAT
TCTCATTTAACCGTGCTATTTTCAATTGCAAATAAGTACAACTTAAAACA
GCATGATTAGAAATAGACTAAGTCAGATCAAGAGGTTGGCATTCAGGCTT
ACTCCTTAGGAGCTGAAGACACAACTTGGCTCTCTCCTTAGCCCTGGTGA
ATGATGCTCAGTAATCTGCTTAGTGGTGTTATAAAACCATCTAGTGGGCT
TCTGAAAACTAATGTTGTGAGCCTACTAGATTTATTGAGTTTATTTCCTT
GTGTAAGTTAACTTCTTTGTTCAAATCTGCTGATTTGATTTTAGATGTGC
TTTCTGTGGGTTTTTTGATCGTTTCAAAGCTGTGTCAGCCAGTATTTACC
CAGTGGCTGCGCTGGCTGGCACTATGGTCCCTCAGTAACACAGCTGGAAT
AGTTTGTTCACGAATTTCCATGTGGCTCTGTTTCACTGTGAGCAGTGGCT
CATCGTTCAGTGGCAGTCACTGTGTAATAGGACAAGTGTCTCAGATCTTA
ATGGTGGTACTGATCTTACTAATTCTATTCTTTCCTACCCTACCCAAAGG
TGAGGCTGTGTTTGCACGGTGCCTGTCGTCCCTCAAGGATGAGAGAGTGC
AGGCCAGTAAGCTGCTGAATGGGCCTAAATTGACTCAATTTAGTGGGAAC
AAGAAGGCATTTCTTGAGGACATACGCAAGGTGAGTCATTGTGTTTGCCA
AAGTACTTTATTAAAGCTGCTAATCAAAACAAGTTGTGGATGCTGTAAGC
TGTGATGAGGGGCTCGTGTCTACTTCTCATTCAACTTTGCAGGATTCATT
TCTATTATTTTGTTTGTTTTAGGCCCTGTATGCTTCCAAGATTATCTCCT
ATGCTCAAGGCTTCATGCTGCTGAGACAAGCAGCCAAAGAATTCGGCTGG
ACGCTGAATTATGGTGGCATTGCACTGATGTGGAGGGGAGGCTGCATCAT
CAGAAGGTAATTGAGATGAAGGGGTGATGTAGTTGCTGAGGGGCGAAGAG
GAGGCTATTTACTTCATGCAGTGCTAGACTGGGAAGCCTAGACATGAGAA
AATCCATGGAGTTTACCTGTTGGTAAGGTTCTGGGAGTCTGTTTCTCTAG
TCAGCATTAGAGATTACAGATGACACCAATTTTCTGGTGTCTAAGCTACC
ACCGATTTTCATAGACTGAGTCAAGTCTTGGCATTGTACTTTTTGATTCT
AGGCCATTGTAGAAGGGTACACAGATTGATTTCTGGCTTGTGTGTGTTCT
CCCTTAGTGTGTTCCTGGGAAAAATCAAAGACGCTTTTGATCGAAACCCT
GAACTTCAGAATTTGCTGTTGGATGATTTCTTTAAGACAGCTGTAGAAAA
ATGCCAGGTGAGTTTCCAAGGAAGGAAAAACATAAAAACAGCAATATACA
GTCTGAACTTCTGTACTTTGTTTCCGTCACAATTTTATTTAAACAGAAAA
ATGAAAAGGTGGGAAGAACATCTTTGGATCCTATTTATATAGCATCCTTA
ATCCCCAAGATTTCTAATCAATCTTCGAGCTGTTTGTCTATTTTACCTGC
ACACATTTGTGAGCAGGAATTAATCATTTATGGCTTTGAGGTATCCTTTA
ATAGAACATACCAGTCTTAGAAGACTAGGATGTGATATAAGCCATATAAT
TGAAGGTGGTTGAAATAACACAAGAAAATTACTGAGATTCAAATTAGAAT
TTTTCAACATGTTGGTGACCTGCCCTTTGAAATACCTACAAATGCTGCTT
GCCTCTTTTTCATCAAAAAGCTGAAAAGTGGAAGTGCTGAATGGAAAAAA
AAAGGATTTTGCACCACTTCATAAATGATAATCCAGGTATATCAAGCAGC
AAATCAATATCTTGCATGTTATTCTAAGAATATCAATGTCAAGATAATAC
AGGAGCAAACAAACATATAATTGTTGTACCATGGTTCTTCTCTTTAGTTC
TAGTGAAGCTACCATTAAAAACTGAAGATTTCCATTGTACCATTACAGAA
GAGCCCTAAGCAGGAATACAGTAGTTCAATAGAACCACAGCGTCAGGGAA
AAAATGTCTAGCCTGTATGAACATTCTCATCGCTGCCAGGTGCCTTGTGC
CTGCTGTGCGCTTGGATTTCAGTGGTACAAAGTATCAAGCTTTGTTCTAG
TTGTTTGCAGTAGCACTAAAATAACAGCTGTCAGACCCACCATTCCTTAG
ACTGTCCAAACAGTGCCCTGATTTGGGCAGGATATGACAGGAGAACTAAA
AACAGATTATCTGGCCAACAAAAAAGGCTTACCATTAATAACTCCTTTTA
TTGAAGCTGATTATTCCATGCAGGTCACTAAATCAGGTGTACAGCTGAAA
TAACGATTATCCACGTGTCTGTCTGAAGCAGTGTGCTGATTTCTTATGTT
TGGGTGGTGGTTGATTAGATGTCCTGAAAACGCCTCACTGTGTTCGTGTT
CTTGGGATGCGCTGATGATTTGTGAAGGAACAGCATCCTTGTCTCAGTTG
TCATTTGATTGCATGCGAAGTATACGCCTGCATTTTTATTTGCTTGATAG
CTGGCTGGCTCACTTGCTATTATTTTGGATCAACCTTTTTGTGTTAAATC
ATGAATATACCACTGCGTTTGCTCAGATTTAGATTTTATATCATGTGAAA
TTGCACACAGTGATAAACTGGAATGGTGTACATGCTCACACATACGTTTC
TCTCTTTTTTTTCCTCCCCCTCTGCCCCAGGACTCCTGGCGACACGTAAT
CAGTACTGGAGTCCAGCATGGTATTCCTATGCCCTGCTTCACTACAGCAC
TTTCCTTTTATGATGGATACAGACATGAAGTGCTGCCAGCTAACCTGATC
CAGGTAGGTGCCTGAAATAGTGTGGTAGATCTTCTATCTACTGAAATATC
ATTGTGTTCTTATTTAATTACTGATCTAAGGATCATGATGACAGTATCTC
ATGGTCACTCACCACTGTAAAAATATAGGCATTGATTGCCTAATATACTT
CAAAACCTGAAATACAAGCGAATAAGATTCTGTGAGATATTAGGCCATAG
AATACAAGAGGCAGTGGTATGACAGTGCCCAGTGTGTGTTAGTATTGTAT
CTCCAGAGCAGGGGGTAATGGTGTTCTTGGATCAAAATTTTTTGTTAAAA
AAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTGGAGTTCTGG
CTGTATGTAAGTCTTTCAGGTTTGTACATGTCAGGGAGAAGACAGTTGTC
TTTCTGTGAAATTGCTGATGAAGAGATTTTAATAAATGTTTTTTTTTTTT
GTAGTCTTTCCTAATAATGATGCAATAGTTTTGAATGTTGTACCAGAGTC
AGATTTCATTTCTTGAATTCATATGCTCATGTCTCAGTGTGTGCCATTTC
CAGTACTTGTATGGCTGTCATATTCATGTGTCTTTTTATTTTGTGTGTGT
GTGTTCTTATTCTAGGCTCAGCGTGATTACTTTGGTGCACATACATATGA
GTTGTTATCGAAGCCAGGTGTATTTATCCATACTAACTGGACAGGCCATG
GAGGAAATGTGTCCTCTTCTGCCTACAATGTCTAATGGAAACATTCCCTC
TTGAAGCTGAGATACTATAGATCTCACATATTCCTCTGTGAACGCCCCTT
TTTACTGTACTGTTAGAACTTGCATTTGCACACTTTTGTAATAACTTGTG
GGTATATTTCACATATATAAGAAAGCTAAATAAACCTGCTTGTACGTACA
CTGAGATGGTTTTTTTCCTTTCCTGCTGGCTAAAATGTCTTTAAGCAGAA
TTTTATTGTGCTAATACTTAATGCATTTTAATGTGCTAATATTTTTATTG
CATTATAGTGCATAAACTCATAGAATCAAGATAGAGAAGCCTGCATTTCA
ATAATTGCTAAAGTGGAGAGTGGCAGACAGTCAGCGCAGTAAAGCTGCTG
GAGATTCCAGGGAGGTAAAGAGTTTTTCTTCTTGTTGGTTTGCAGCAGGC
AGCAGCTGGGTTCTTGAAGGTTGATTTCTGGGTATCTACCTGCACGGGGT
CCTGCACACTGCAAGCTGCTTCTTGTGAAAGGATGAAGGGTGGAATGGGG
CATGGAGAACTTTGATACGAATTAGAGGTGTCAAGACAGGTCTGGCTGTC
AGTGGTGGTTCTCTGTGCAGCTGCAGTTCCCCACTGATACTTCTTAGCCT
TGTGTTGTGCCTCCTCCTGCCCCGGGCCAAGTAAAATAACCTGCAGCAGC
ATGCAAAATTGGCTTTGTTTTTCCTCTAATCCCATCATTTTAAGGACTGT
TGAAAATTCACCTGGATGCTTGCACCTTTATTTCGCAGAACCTGTCGTGT
GATCTGTTTTGAGCTGTGAACTGATGCCTGGATTAATTTTGTGCTCCCTT
TAGCAGGAGGGCTGCCCAGCAGCTGAGTGCCAGTGTGATTAACAAGGGAT
TGCTTGTGATTTAAAGCAACTTTTTTGCAGATTATACTGTAAGATCTAGG
GGTTCTCTGTAACACCAGTGTGTTATTGCAGACACGGGCACCTGAAGTGC
TGTTTAAGGAAGTTTAAACAGTTGCTGTTCGGGTGCTTTGTGTTATAATT
CTCTGTGGTGAGCAATAAGAACGGCTCTGCCCGGCG
Summary:
=====================================================
file name: RM2sequpload_765
sequences: 1
total length: 10686 bp (10686 bp excl N-runs)
GC level: 0.00 %
bases masked: 117 bp ( 1.09 %)
=====================================================
number of length percentage
elements occupied of sequence
-----------------------------------------------------
Retroelements 0 0 bp 0.00 %
SINEs: 0 0 bp 0.00 %
LINEs: 0 0 bp 0.00 %
Penelope 0 0 bp 0.00 %
CRE/SLACS 0 0 bp 0.00 %
L2/CR1/Rex 0 0 bp 0.00 %
R1/LOA/Jockey 0 0 bp 0.00 %
R2/R4/NeSL 0 0 bp 0.00 %
RTE/Bov-B 0 0 bp 0.00 %
L1/CIN4 0 0 bp 0.00 %
LTR elements: 0 0 bp 0.00 %
BEL/Pao 0 0 bp 0.00 %
Ty1/Copia 0 0 bp 0.00 %
Gypsy/DIRS1 0 0 bp 0.00 %
Retroviral 0 0 bp 0.00 %
DNA transposons 0 0 bp 0.00 %
hobo-Activator 0 0 bp 0.00 %
Tc1-IS630-Pogo 0 0 bp 0.00 %
En-Spm 0 0 bp 0.00 %
MuDR-IS905 0 0 bp 0.00 %
PiggyBac 0 0 bp 0.00 %
Tourist/Harbinger 0 0 bp 0.00 %
Other (Mirage, 0 0 bp 0.00 %
P-element, Transib)
Rolling-circles 0 0 bp 0.00 %
Unclassified: 0 0 bp 0.00 %
Total interspersed repeats: 0 bp 0.00 %
Small RNA: 0 0 bp 0.00 %
Satellites: 0 0 bp 0.00 %
Simple repeats: 2 56 bp 0.52 %
Low complexity: 2 61 bp 0.57 %
==================================================
* most repeats fragmented by insertions or deletions
have been counted as one element
The query species was assumed to be "Gallus".
RepBase Update 8.12, RM database version 20040306
Institute for Systems Biology
This server is made possible by funding from the National Human Genome Research
Institute (NIGRI grant # RO1 HG002939-01) 2003.