ORNL CompBio Genome Annotation Pipeline |
Grail CpG Islands
Grail Repetitive Elements
GrailEXP v3.2 Gene Predictions
GrailEXP v3.2 EST/mRNA Alignments
GrailEXP v3.2 Exon Candidates
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Grail CpG Islands
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Grail Repetitive Elements
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Location | Statistics | ||||||
---|---|---|---|---|---|---|---|
ID | Strand | Begin | End | Type | Score | BLAST E-Val | Element Name(s) |
1 | . | 1141 | 1261 | Simple | 85 | - | Simple Repeat |
2 | + | 2473 | 2542 | Complex | 189 | 1e-37 | L1___Primate_L1_consensus./L1A |
3 | . | 2596 | 2631 | Simple | 105 | - | Simple Repeat |
4 | + | 2786 | 2807 | Complex | 44 | 6e-04 | PROTOP___Autonomous_DNA_transp |
GrailEXP v3.2 Exon Candidates
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Location | Open Reading Frame | Statistics | |||||||
---|---|---|---|---|---|---|---|---|---|
ID | Strand | Begin | End | Begin | End | Type | Phase | Frame | Score |
S1 | + | 1748 | 2070 | 1590 | 2198 | Internal | 2 | 2 | 0.15 |
S2 | + | 1766 | 2070 | 1590 | 2198 | Internal | 2 | 2 | 0.16 |
S3 | + | 1867 | 2070 | 1590 | 2198 | Internal | 1 | 2 | 0.54 |
1 | + | 1884 | 2070 | 1590 | 2198 | Initial | 0 | 2 | 0.83 |
S4 | + | 1896 | 2070 | 1590 | 2198 | Initial | 0 | 2 | 0.83 |
2 | + | 3541 | 3621 | 3501 | 3809 | Internal | 1 | 2 | 0.52 |
GrailEXP v3.2 EST/mRNA Alignments
GrailEXP v3.2 Gene Predictions