Check Current Queue Status
processing output:
cycle 1
cycle 2
cycle 3
cycle 4
done
identifying simple repeats
identifying full-length Alus
identifying full-length interspersed repeats
identifying remaining Alus
identifying short interspersed repeats
identifying long interspersed repeats
identifying MIR and LINE2
identifying retroviral sequences
identifying tough LINE1s
identifying more simple repeats
identifying low complexity DNA
Repeat sequence:
SW perc perc perc query position in query matching repeat position in repeat
score div. del. ins. sequence begin end (left) repeat class/family begin end (left) ID
658 10.5 0.9 0.9 genomic 2473 2586 (1278) + L1P LINE/L1 4079 4192 (1954)
22 2.1 0.0 6.2 genomic 2587 2634 (1230) + AT_rich Low_complexity 1 45 (0)
23 0.0 0.0 0.0 genomic 2664 2686 (1178) + AT_rich Low_complexity 1 23 (0)
34 0.0 0.0 0.0 genomic 2775 2808 (1056) + AT_rich Low_complexity 1 34 (0)
Masked Sequence:
>genomic
CTCGAGGGGCCTAGACATTGCCCTCCAGAGAGAGCACCCAACACCCTCCA
GGCTTGACCGGCCAGGGTGTCCCCTTCCTACCTTGGAGAGAGCAGCCCCA
GGGCATCCTGCAGGGGGTGCTGGGACACCAGCTGGCCTTCAAGGTCTCTG
CCTCCCTCCAGCCACCCCACTACACGCTGCTGGGATCCTGGATCTCAGCT
CCCTGGCCGACAACACTGGCAAACTCCTACTCATCCACGAAGGCCCTCCT
GGGCATGGTGGTCCTTCCCAGCCTGGCAGTCTGTTCCTCACACACCTTGT
TAGTGCCCAGCCCCTGAGGTTGCAGCTGGGGGTGTCTCTGAAGGGCTGTG
AGCCCCCAGGAAGCCCTGGGGAAGTGCCTGCCTTGCCTCCCCCCGGCCCT
GCCAGCGCCTGGCTCTGCCCTCCTACCTGGGCTCCCCCCATCCAGCCTCC
CTCCCTACACACTCCTCTCAAGGAGGCACCCATGTCCTCTCCAGCTGCCG
GGCCTCAGAGCACTGTGGCGTCCTGGGGCAGCCACCGCATGTCCTGCTGT
GGCATGGCTCAGGGTGGAAAGGGCGGAAGGGAGGGGTCCTGCAGATAGCT
GGTGCCCACTACCAAACCCGCTCGGGGCAGGAGAGCCAAAGGCTGGGTGT
GTGCAGAGCGGCCCCGAGAGGTTCCGAGGCTGAGGCCAGGGTGGGACATA
GGGATGCGAGGGGCCGGGGCACAGGATACTCCAACCTGCCTGCCCCCATG
GTCTCATCCTCCTGCTTCTGGGACCTCCTGATCCTGCCCCTGGTGCTAAG
AGGCAGGTAAGGGGCTGCAGGCAGCAGGGCTCGGAGCCCACTGGGGGGCC
AGGACGGAGCTGGGCCAGTGCACAGCTTCCCACACCTGCCCACCCCCAGA
GTCCTGCCGCCACCCCCAGATCACACGGAAGATGAGGTCCGAGTGGCCTG
CTGAGGACTTGCTGCTTGTCCCCAGGTCCCCAGGTCATGCCCTCCTTCTG
CCACCCTGGGGAGCTGAGGGCCTCAGCTGGGGCTGCTGTCCTAAGGCAGG
GTGGGAACTAGGCAGCCAGCAGGGAGGGGACCCCTCCCTCACTCCCACTC
TCCCACCCCCACCACCTTGGCCCATCCATGGCGGCATCTTGGGCCATCCG
GGACTGGGGACAGGGGTCCTGGGGACAGGGGTCCGGGGACAGGGTCCTGG
GGACAGGGGTGTGGGGACAGGGGTCTGGGGACAGGGGTGTGGGGACAGGG
GTGTGGGGACGTCCTGGGGACAGGGGTCTGGGGACAGCAGCGCAAAGAGC
CCCGCCCTGCAGCCTCCAGCTCTCCTGGTCTAATGTGGAAAGTGGCCCAG
GTGAGGGCTTTGCTCTCCTGGAGACATTTGCCCCCAGCTGTGAGCAGGGA
CAGGTCTGGCCACCGGGCCCCTGGTTAAGACTCTAATGACCCGCTGGTCC
TGAGGAAGAGGTGCTGACGACCAAGGAGATCTTCCCACAGACCCAGCACC
AGGGAAATGGTCCGGAAATTGCAGCCTCAGCCCCCAGCCATCTGCCGACC
CCCCCACCCCGCCCTAATGGGCCAGGCGGCAGGGGTTGACAGGTAGGGGA
GATGGGCTCTGAGACTATAAAGCCAGCGGGGGCCCAGCAGCCCTCAGCCC
TCCAGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGGTCTGTTCCAAGG
GCCTTTGCGTCAGGTGGGCTCAGGGTTCCAGGGTGGCTGGACCCCAGGCC
CCAGCTCTGCAGCAGGGAGGACGTGGCTGGGCTCGTGAAGCATGTGGGGG
TGAGCCCAGGGGCCCCAAGGCAGGGCACCTGGCCTTCAGCCTGCCTCAGC
CCTGCCTGTCTCCCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCG
CCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCTGACCCAGCCG
CAGCCTTTGTGAACCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTC
TACCTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAGACCCGCCG
GGAGGCAGAGGACCTGCAGGGTGAGCCAACCGCCCATTGCTGCCCCTGGC
CGCCCCCAGCCACCCCCTGCTCCTGGCGCTCCCACCCAGCATGGGCAGAA
GGGGGCAGGAGGCTGCCACCCAGCAGGGGGTCAGGTGCACTTTTTTAAAA
AGAAGTTCTCTTGGTCACGTCCTAAAAGTGACCAGCTCCCTGTGGCCCAG
TCAGAATCTCAGCCTGAGGACGGTGTTGGCTTCGGCAGCCCCGAGATACA
TCAGAGGGTGGGCACGCTCCTCCCTCCACTCGCCCCTCAAACAAATGCCC
CGCAGCCCATTTCTCCACCCTCATTTGATGACCGCAGATTCAAGTGTTTT
GTTAAGTAAAGTCCTGGGTGACCTGGGGTCACAGGGTGCCCCACGCTGCC
TGCCTCTGGGCAGCAGCAGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTAGCTGTTCGCGC
CTAAACCAATATCNNNNNNNNNNNNNNNNNNNNNNNCTCTATTGCAGATG
ATGTAAAAGAATACTTGCTATCTGAGTGATAGTGATGACATATAATACCA
CCAAGATCTCTGATGCAGTATCCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCAGCAGCAGCAGCGAACACCCCATCACGCCCGGAGGAGGGCG
TGGCTGCCTGCCTGAGTGGGCCAGACCCCTGTCGCCAGCCTCACGGCAGC
TCCATAGTCAGGAGATGGGGAAGATGCTGGGGACAGGCCCTGGGGAGAAG
TACTGGGATCACCTGTTCAGGCTCCCACTGTGACGCTGCCCCGGGGCGGG
GGAAGGAGGTGGGACATGTGGGCGTTGGGGCCTGTAGGTCCACACCCAGT
GTGGGTGACCCTCCCTCTAACCTGGGTCCAGCCCGGCTGGAGATGGGTGG
GAGTGCGACCTAGGGCTGGCGGGCAGGCGGGCACTGTGTCTCCCTGACTG
TGTCCTCCTGTGTCCCTCTGCCTCGCCGCTGTTCCGGAACCTGCTCTGCG
CGGCACGTCCTGGCAGTGGGGCAGGTGGAGCTGGGCGGGGGCCCTGGTGC
AGGCAGCCTGCAGCCCTTGGCCCTGGAGGGGTCCCTGCAGAAGCGTGGCA
TTGTGGAACAATGCTGTACCAGCATCTGCTCCCTCTACCAGCTGGAGAAC
TACTGCAACTAGACGCAGCCTGCAGGCAGCCCCACACCCGCCGCCTCCTG
CACCGAGAGAGATGGAATAAAGCCCTTGAACCAGCCCTGCTGTGCCGTCT
GTGTGTCTTGGGGGCCCTGGGCCAAGCCCCACTTCCCGGCACTGTTGTGA
GCCCCTCCCAGCTCTCTCCACGCTCTCTGGGTGCCCACAGGTGCCAACGC
CGGCCAGGCCCAGCATGCAGTGGCTCTCCCCAAAGCGGCCATGCCTGTTG
GCTGCCTGCTGCCCCCACCCTGTGGCTCAGGGTCCAGTATGGGAGCTTCG
GGGGTCTCTGAGGGGCCAGGGATGGTGGGGCCACTGAGAAGTGACTTCTT
GTTCAGTAGCTCTGGACTCTTGGAGTCCCCAGAGACCTTGTTCAGGAAAG
GGAATGAGAACATTCCAGCAATTTTCCCCCCACCTAGCCCTCCCAGGTTC
TATTTTTAGAGTTATTTCTGATGGAGTCCCTGTGGAGGGAGGAGGCTGGG
CTGAGGGAGGGGGT
Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences: 1
total length: 3864 bp
GC level: 61.98 %
bases masked: 219 bp ( 5.67 %)
==================================================
number of length percentage
elements* occupied of sequence
--------------------------------------------------
SINEs: 0 0 bp 0.00 %
ALUs 0 0 bp 0.00 %
MIRs 0 0 bp 0.00 %
LINEs: 1 114 bp 2.95 %
LINE1 1 114 bp 2.95 %
LINE2 0 0 bp 0.00 %
L3/CR1 0 0 bp 0.00 %
LTR elements: 0 0 bp 0.00 %
MaLRs 0 0 bp 0.00 %
ERVL 0 0 bp 0.00 %
ERV_classI 0 0 bp 0.00 %
ERV_classII 0 0 bp 0.00 %
DNA elements: 0 0 bp 0.00 %
MER1_type 0 0 bp 0.00 %
MER2_type 0 0 bp 0.00 %
Unclassified: 0 0 bp 0.00 %
Total interspersed repeats: 114 bp 2.95 %
Small RNA: 0 0 bp 0.00 %
Satellites: 0 0 bp 0.00 %
Simple repeats: 0 0 bp 0.00 %
Low complexity: 3 105 bp 2.72 %
==================================================
* most repeats fragmented by insertions or deletions
have been counted as one element
The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000 quick
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000