Check Current Queue Status
processing output: cycle 1 cycle 2 cycle 3 cycle 4 done identifying simple repeats identifying full-length Alus identifying full-length interspersed repeats identifying remaining Alus identifying short interspersed repeats identifying long interspersed repeats identifying MIR and LINE2 identifying retroviral sequences identifying tough LINE1s identifying more simple repeats identifying low complexity DNA

Repeat sequence:

   SW  perc perc perc  query     position in query    matching repeat         position in  repeat
score  div. del. ins.  sequence  begin  end (left)    repeat   class/family   begin  end (left)  ID

  658  10.5  0.9  0.9  genomic    2473 2586 (1278) +  L1P      LINE/L1         4079 4192 (1954)      
   22   2.1  0.0  6.2  genomic    2587 2634 (1230) +  AT_rich  Low_complexity     1   45    (0)      
   23   0.0  0.0  0.0  genomic    2664 2686 (1178) +  AT_rich  Low_complexity     1   23    (0)      
   34   0.0  0.0  0.0  genomic    2775 2808 (1056) +  AT_rich  Low_complexity     1   34    (0)      

Masked Sequence:

>genomic       
CTCGAGGGGCCTAGACATTGCCCTCCAGAGAGAGCACCCAACACCCTCCA
GGCTTGACCGGCCAGGGTGTCCCCTTCCTACCTTGGAGAGAGCAGCCCCA
GGGCATCCTGCAGGGGGTGCTGGGACACCAGCTGGCCTTCAAGGTCTCTG
CCTCCCTCCAGCCACCCCACTACACGCTGCTGGGATCCTGGATCTCAGCT
CCCTGGCCGACAACACTGGCAAACTCCTACTCATCCACGAAGGCCCTCCT
GGGCATGGTGGTCCTTCCCAGCCTGGCAGTCTGTTCCTCACACACCTTGT
TAGTGCCCAGCCCCTGAGGTTGCAGCTGGGGGTGTCTCTGAAGGGCTGTG
AGCCCCCAGGAAGCCCTGGGGAAGTGCCTGCCTTGCCTCCCCCCGGCCCT
GCCAGCGCCTGGCTCTGCCCTCCTACCTGGGCTCCCCCCATCCAGCCTCC
CTCCCTACACACTCCTCTCAAGGAGGCACCCATGTCCTCTCCAGCTGCCG
GGCCTCAGAGCACTGTGGCGTCCTGGGGCAGCCACCGCATGTCCTGCTGT
GGCATGGCTCAGGGTGGAAAGGGCGGAAGGGAGGGGTCCTGCAGATAGCT
GGTGCCCACTACCAAACCCGCTCGGGGCAGGAGAGCCAAAGGCTGGGTGT
GTGCAGAGCGGCCCCGAGAGGTTCCGAGGCTGAGGCCAGGGTGGGACATA
GGGATGCGAGGGGCCGGGGCACAGGATACTCCAACCTGCCTGCCCCCATG
GTCTCATCCTCCTGCTTCTGGGACCTCCTGATCCTGCCCCTGGTGCTAAG
AGGCAGGTAAGGGGCTGCAGGCAGCAGGGCTCGGAGCCCACTGGGGGGCC
AGGACGGAGCTGGGCCAGTGCACAGCTTCCCACACCTGCCCACCCCCAGA
GTCCTGCCGCCACCCCCAGATCACACGGAAGATGAGGTCCGAGTGGCCTG
CTGAGGACTTGCTGCTTGTCCCCAGGTCCCCAGGTCATGCCCTCCTTCTG
CCACCCTGGGGAGCTGAGGGCCTCAGCTGGGGCTGCTGTCCTAAGGCAGG
GTGGGAACTAGGCAGCCAGCAGGGAGGGGACCCCTCCCTCACTCCCACTC
TCCCACCCCCACCACCTTGGCCCATCCATGGCGGCATCTTGGGCCATCCG
GGACTGGGGACAGGGGTCCTGGGGACAGGGGTCCGGGGACAGGGTCCTGG
GGACAGGGGTGTGGGGACAGGGGTCTGGGGACAGGGGTGTGGGGACAGGG
GTGTGGGGACGTCCTGGGGACAGGGGTCTGGGGACAGCAGCGCAAAGAGC
CCCGCCCTGCAGCCTCCAGCTCTCCTGGTCTAATGTGGAAAGTGGCCCAG
GTGAGGGCTTTGCTCTCCTGGAGACATTTGCCCCCAGCTGTGAGCAGGGA
CAGGTCTGGCCACCGGGCCCCTGGTTAAGACTCTAATGACCCGCTGGTCC
TGAGGAAGAGGTGCTGACGACCAAGGAGATCTTCCCACAGACCCAGCACC
AGGGAAATGGTCCGGAAATTGCAGCCTCAGCCCCCAGCCATCTGCCGACC
CCCCCACCCCGCCCTAATGGGCCAGGCGGCAGGGGTTGACAGGTAGGGGA
GATGGGCTCTGAGACTATAAAGCCAGCGGGGGCCCAGCAGCCCTCAGCCC
TCCAGGACAGGCTGCATCAGAAGAGGCCATCAAGCAGGTCTGTTCCAAGG
GCCTTTGCGTCAGGTGGGCTCAGGGTTCCAGGGTGGCTGGACCCCAGGCC
CCAGCTCTGCAGCAGGGAGGACGTGGCTGGGCTCGTGAAGCATGTGGGGG
TGAGCCCAGGGGCCCCAAGGCAGGGCACCTGGCCTTCAGCCTGCCTCAGC
CCTGCCTGTCTCCCAGATCACTGTCCTTCTGCCATGGCCCTGTGGATGCG
CCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCTGACCCAGCCG
CAGCCTTTGTGAACCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTC
TACCTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAGACCCGCCG
GGAGGCAGAGGACCTGCAGGGTGAGCCAACCGCCCATTGCTGCCCCTGGC
CGCCCCCAGCCACCCCCTGCTCCTGGCGCTCCCACCCAGCATGGGCAGAA
GGGGGCAGGAGGCTGCCACCCAGCAGGGGGTCAGGTGCACTTTTTTAAAA
AGAAGTTCTCTTGGTCACGTCCTAAAAGTGACCAGCTCCCTGTGGCCCAG
TCAGAATCTCAGCCTGAGGACGGTGTTGGCTTCGGCAGCCCCGAGATACA
TCAGAGGGTGGGCACGCTCCTCCCTCCACTCGCCCCTCAAACAAATGCCC
CGCAGCCCATTTCTCCACCCTCATTTGATGACCGCAGATTCAAGTGTTTT
GTTAAGTAAAGTCCTGGGTGACCTGGGGTCACAGGGTGCCCCACGCTGCC
TGCCTCTGGGCAGCAGCAGCAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTAGCTGTTCGCGC
CTAAACCAATATCNNNNNNNNNNNNNNNNNNNNNNNCTCTATTGCAGATG
ATGTAAAAGAATACTTGCTATCTGAGTGATAGTGATGACATATAATACCA
CCAAGATCTCTGATGCAGTATCCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCAGCAGCAGCAGCGAACACCCCATCACGCCCGGAGGAGGGCG
TGGCTGCCTGCCTGAGTGGGCCAGACCCCTGTCGCCAGCCTCACGGCAGC
TCCATAGTCAGGAGATGGGGAAGATGCTGGGGACAGGCCCTGGGGAGAAG
TACTGGGATCACCTGTTCAGGCTCCCACTGTGACGCTGCCCCGGGGCGGG
GGAAGGAGGTGGGACATGTGGGCGTTGGGGCCTGTAGGTCCACACCCAGT
GTGGGTGACCCTCCCTCTAACCTGGGTCCAGCCCGGCTGGAGATGGGTGG
GAGTGCGACCTAGGGCTGGCGGGCAGGCGGGCACTGTGTCTCCCTGACTG
TGTCCTCCTGTGTCCCTCTGCCTCGCCGCTGTTCCGGAACCTGCTCTGCG
CGGCACGTCCTGGCAGTGGGGCAGGTGGAGCTGGGCGGGGGCCCTGGTGC
AGGCAGCCTGCAGCCCTTGGCCCTGGAGGGGTCCCTGCAGAAGCGTGGCA
TTGTGGAACAATGCTGTACCAGCATCTGCTCCCTCTACCAGCTGGAGAAC
TACTGCAACTAGACGCAGCCTGCAGGCAGCCCCACACCCGCCGCCTCCTG
CACCGAGAGAGATGGAATAAAGCCCTTGAACCAGCCCTGCTGTGCCGTCT
GTGTGTCTTGGGGGCCCTGGGCCAAGCCCCACTTCCCGGCACTGTTGTGA
GCCCCTCCCAGCTCTCTCCACGCTCTCTGGGTGCCCACAGGTGCCAACGC
CGGCCAGGCCCAGCATGCAGTGGCTCTCCCCAAAGCGGCCATGCCTGTTG
GCTGCCTGCTGCCCCCACCCTGTGGCTCAGGGTCCAGTATGGGAGCTTCG
GGGGTCTCTGAGGGGCCAGGGATGGTGGGGCCACTGAGAAGTGACTTCTT
GTTCAGTAGCTCTGGACTCTTGGAGTCCCCAGAGACCTTGTTCAGGAAAG
GGAATGAGAACATTCCAGCAATTTTCCCCCCACCTAGCCCTCCCAGGTTC
TATTTTTAGAGTTATTTCTGATGGAGTCCCTGTGGAGGGAGGAGGCTGGG
CTGAGGGAGGGGGT

Summary:

==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:      3864 bp
GC level:         61.98 %
bases masked:       219 bp (  5.67 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                1          114 bp     2.95 %
      LINE1           1          114 bp     2.95 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:      114 bp     2.95 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       0            0 bp     0.00 %
Low complexity:       3          105 bp     2.72 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000                 quick
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000