Results for genomic
<pre>
Job <779337> is submitted to queue <fastblastq>.
genewise $Name:  $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright

Query protein:       FGENESH
Comp Matrix:         /nfs/disk100/pubseq/wise/wisecfg/blosum62.bla
Gap open:            12
Gap extension:       2
Start/End            local
Target Sequence      genomic
Strand:              forward
Start/End (protein)  local
Gene Paras:          /nfs/disk100/pubseq/wise/wisecfg/human.gf
Codon Table:         /nfs/disk100/pubseq/wise/wisecfg/codon.table
Subs error:          1e-05
Indel error:         1e-05
Model splice?        model
Model codon bias?    flat
Model intron bias?   tied
Null model           syn
Algorithm            623

genewise output
Score 264.40 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

FGENESH            1 MALWMRLLPLLALLALWGPDPAAAFVNQHLCGSHLVEALYLVCGERGFF 
                     MALWMRLLPLLALLALWGPDPAAAFVNQHLCGSHLVEALYLVCGERGFF 
                     MALWMRLLPLLALLALWGPDPAAAFVNQHLCGSHLVEALYLVCGERGFF 
genomic         1884 agctaccccccgccgctgcgcgggtgaccctgtccgggctcgtggcgtt 
                     tctgtgttcttcttctggcaccccttaaatggcattactattggaggtt 
                     gcgggccgcgggggccgatcacactgcacgccacggatccagcgaaccc 


FGENESH           50 YTPKTRREAEDLQ                          GQVELGGGPG 
                     YTPKTRREAEDLQ                          GQVELGGGPG 
                     YTPKTRREAEDLQ          V:V[gtg]        GQVELGGGPG 
genomic         2031 tacaaccggggccGGTGAGCC  Intron 1   CAGTGgcggcgggcg 
                     accacggacaata <1-----[2071 : 3216]-1>  gatatgggcg 
                     cacgccggagcgg                          gggggcgctt 


FGENESH           74 AGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN             
                     AGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN             
                     AGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN             
genomic         3249 ggaccctgcggtccacgaggcttaaattctccgatta             
                     cggtactctagctaaggttaaggcgtgctaataaaga             
                     accggcgcgggcgggtctgaactcccccccgggcccc             


//
Gene 1
Gene 1884 3359 
  Exon 1884 2070
  Exon 3217 3359
//
>genomic.[1884:3359].sp.tr
MALWMRLLPLLALLALWGPDPAAAFVNQHLCGSHLVEALYLVCGERGFFYTPKTRREAED
LQVGQVELGGGPGAGSLQPLALEGSLQKRGIVEQCCTSICSLYQLENYCN
//
>genomic.[1884:3359].sp
ATGGCCCTGTGGATGCGCCTCCTGCCCCTGCTGGCGCTGCTGGCCCTCTGGGGACCTGAC
CCAGCCGCAGCCTTTGTGAACCAACACCTGTGCGGCTCACACCTGGTGGAAGCTCTCTAC
CTAGTGTGCGGGGAACGAGGCTTCTTCTACACACCCAAGACCCGCCGGGAGGCAGAGGAC
CTGCAGGTGGGGCAGGTGGAGCTGGGCGGGGGCCCTGGTGCAGGCAGCCTGCAGCCCTTG
GCCCTGGAGGGGTCCCTGCAGAAGCGTGGCATTGTGGAACAATGCTGTACCAGCATCTGC
TCCCTCTACCAGCTGGAGAACTACTGCAAC
//