OriSeq Project



    Tables description

    chrom chromosome
    chromStart Origin Starting position
    chromEnd Origin Endind position
    timing t average timing of an origin
    timing.class.6 class of timing with 6 classes
    read.density nb of reads divided by origin length
    ori.density.Mb density of origins within a window of 1Mb
    dist.cgi distance to nearest CGI with data from human CGI hg19 UCSC
    dist.tss distance to nearest TSS with data from human TSS hg19 UCSC
    dist.tss.plus distance to nearest tss on + strand with data from human TSS hg19 UCSC
    dist.tss.minus distance to nearest tss on - strand with data from human TSS hg19 UCSC
    dens5kG4.15 density of G4 in 5kb windows (with loop size 1-15) from Gquadruplex.org
    ori.type constitutive, common or cell-line specific origin
    H3k9me3 number of H3K9me3 peaks within origins (same for other marks)