## maf version=1 genomicro release=genomicro_2 # 26924046,27424045,Homo sapiens,7 # query sequence HS7 (158821424 bp) a score=5927.0 s hg18.7 26924046 2922 + 158821424 GCTCACATTTTCTAGAAGGATTAATGTTCTGTAGATCTATTGATCTTCTACATT--CTTCTTAAAGTAT----CCAGGGTAA---TCATTAACAATACTTTGTTTTGATTTACTTGCCTGGTGTCTGAGGCTC-TTCCAGCTCTCTAC--AATACA------------------TTTGCGCTTT--ATTCATGATGCTTATTCTGTAG---ATAAAGA-CAGCA--------------CATTACTGGCATTT----GTAACT--GG---GAGGCTTAAAATTTTT--------------------------------------------------------------------------------------------------AAACATAAAATTAGAGATAATCT--------------AATGTTTAGATTAGGGTTAGA---------------------------------------------------------------------------TTTTTAAATAG----------------------------------------------------GGTATA-----GAACTT--CAAA-AGAAGGTGG-TTTTCTCTTTCCCTGGAAATATTCAGAA-------------------------------------AACAG--------------------------------TCTACCTTTGGTCTTCCAG--GAAGCACAGACAAGGGCAATGATTCAAGAAACCACTGTA-AAAATGCAGATCTCA--------------CCCAGTAA-AGGAGAGTATCTTACTTCCTATTAAG---C--ATAGTTAGATGGGTGATTATTATTAATCATATATAGCA-TTTGCATAACAATGAAG-TTTGGATGGCACTA------T--CACAC--ACTGTCTCATTTACCATATTAAGGAAGC------------atgt----attcattcctcaaatattttataaatgcctactaggtgccagactgcatactttgtactt-ggaatgc---aaaggtgagtaagacaaattctcagtgagcttactttctagttgaggaataca-atGT----TA-TTAAAT----ATAATGTGTTATAATACAGACATGATGAAGTACTGAGGCAACatgaggtt---------actagtattttagc-----ctcactttacag--aaaaaaaaactgaC-----CAaaaatattgatatta-atattat----agg--------------------------------------------------------------------------------------------------------------------------------------------------------gcagttttaacaattaaatgagagattgtattaagttacttagtacaatgacagcccatagtag-----------ggagtccataaat----gttatttc-AAAGAGGTagcatagaataacag---gttggagaatggattctgt-atcaaaccttttggcttggatcctggc-----tacgtcttagtttgtgtggcctcgggaaagttatatgat------atatctaga---------tctcagtttccccagggctaagatgggaat--aa-----caatcataaccacttctcag-------------------ggttgttgttttgagaatcaagtT----------GTCACACGTGTTCAAAAGAA---G-------------------------------------TTATTCATGGC--AAAGATCAAAGCTGGG--AGCAGGTCCAGAA---ACTATAT-----CCCACCAAAC---------TTATAGTTATCCTC-----------TCATAAAATAGA---GATACTGTGGCCCTGA------AGAGTGAG-ATGTCCT-T-ATTTTT-ACCA------TAGGGAGG-AGA-------------ACTCCCTAGCAAATAGTTCAAGCTAGGAGAAGGCAGCAAAGAATATTTGGCATCTTGAAGGTTAGAG------GGAAAACTGGCCTGAAGAGAG-ATGGCCAAAAAGAG-AGGGAAAGCATGGT-ATGACAGCAATAGGGGTTAGGGG-----------AATGTG----------------ACTTGGG--CAGAGGTCGGACTGAACAAAGCAGAGGGA---AATGGCTTCAAGAAGA----------GAGGAGG------AATATG-----CCATCCACACATC----------TCCTAGCACTAAATAC--GGGATAATCTTTCCAATATGTCCAATCTGTATT-TTGCTAAGTGGGGGGTATTTATTTTTATTGGATAATTCCTAAAATGTTATAAACAGAGCT-TAACTAAGTAAGAGTATCCAAAATAGCCCAATAATT------------------------ATCTTTCAAGGTGTCT---GGTACCA--ACATGC-TCTT-T-TCTCTCATTTGGATTCCCAC-AAAG-AAACTGTTGGACATGAAAAAAAGAGGCAGATATTGGTTCACAAT-ATGTCTCAT-GATACTGAGAGAATTTTCCTGATTGCAAT-TTTTCA--------TTTCA------TTTTTTG-----------AATG--AATGATTTAAAT-GTTCTTT---CT--GTACATAATGGGACAGGAATTGTATAATTATTACC-ACAATCCAATTTTAGAACATTTTCAGAGAATGA-AGGAG----T--TTTAAC-----CTGTGATTTAAATGCTACCAGTTT--ATGGATCTCTGTTCTTGTACCAGAGACAATCTGAAGATTC-TCTCCAGAAGTAAACATCCTAACC------------AGCAATCACCAA------CATTAAAACATGAGCCTGTTTTACTCTTTGAG----TGGCTAGC----TTCCTGTGAAAGAAT-ATACATTGCCTCTCTT---CTTTTGTTACCTTTCTGATAATACTGGCTATGCTGTAGGCCAATGTATTAC-ATTAGAGAGCATTTCGAGG-AAAAAGTCCC-----TT------AAAGCTCCTTATATAT-ATTA---CAATTTTCTGCTATACATCATTATTACTAAAATGATTCACAGCTAGTG----TAGCATGTTTAGGCAAGCTCAGATACTTGGCAGTAG-AACACAATTCTTTT---A--ATAGCCTAGC--TCCAATGGGTAACCCTTTG---AAAAAGGCATTTATTGTTAGTTCTGTTAGCTATTGAAC-CAGTCTTTGCATACTTCGATGCATAAGCATAC-AAAT-GGA-AAT-----TTTTATTTTAAGTTCTGTGCTATA-CTTTGCATATGAAAC-AGAAGTTCTT-TAACTATACTGT-GGGA--AATTCAAATGTATTTCCTCCTCTA-GAAAGAAAATTAATCTGAGAACAAGAGT-CTACTTTGAGATTGTATAGAAAAG-GCAAATAT--ACCCTCTGATAT--------GCTGCTTAGTCCTGATCCCCACCCCACCTC-----ATTCCAGTACCCTCATTAACAAGAAGCTGTCAAAATACTTGAACATCATGAAATAAGAATGGTATTTCAACAAAAGATCAAATGCTTAGAAATC-------CACACCCCA-AACCA------------------------------------GGTTATTCTTTCATTCCTAAATCAATAAGCCGGCAAAAAC-AAGACCATATTT-----GAGGT-GGC-AAAACC-------TCCTATGC------------CCTTACATTCT--------GTGAAAACATAA----AAGG-AAAAAA-----GAA-TTCTTCCACATTCTT--CACGCGATTTTC-CATG---AAAGCACTCATT-AAATGATGTTTACATATAATGATG--ACAGAGTG--TAGATGGGTGTACTGCTTGGCATTGGAAGGGCAGTGCCCT--GGAGTC-TT--CCTCCAGTTCAATCTTGAAAA-A-AATAACAGTCCTTTTAGt s panTro2.7 27260288 2904 + 160261443 GCTCACATTTTCTAGAAGGATTAATGTTCTGTAGATCTATTGATCTTCTACATT--CTTCTTAAAGTAT----CCAGGGTAA---TCATTAACAATACTTTGTTTTGATTTACTTGCCTGGTGTCTGAGGCTC-TTCCAGCTCTCTAC--AATACA------------------TTTGCGCTTT--ATTCATGATGCTTATTCTGTAG---ATAAAGA-CAGCA--------------CATTACTGGCATTT----GTAACT--GG---GAGGCTTAAAATTTTT--------------------------------------------------------------------------------------------------AAACATAAAATTAGAGATAATCT--------------AATGTTTAGATAAGGGTTAGA---------------------------------------------------------------------------TTTTTAAATAG----------------------------------------------------GGTATA-----GAACTT--CAAA-AGAAGGTGG-TTTTCTCTTTCCCTGGAAATATTCAGAA-------------------------------------AACAG--------------------------------TCTACCTTTGGTCTTCCAA--GAAGCACAGACAAGGGCAATGATTCAAGAAACCACTGTA-AAAATGCAGATCTCA--------------CCCAGTAA-AGGAGAGTATCTTACTTCCTATTAAG---C--ATAGTTAGATGGGTGATTATTATTAATCATATATAGCA-TTTGCATAACAATGAAG-TTTGGATGGCACTA------T--CACAC--ACTGTCTCATTTACCATATTAAGGAAGC------------atgt----attcattcctcaaatattttataaatgcctactaggtgccagactgcatactttgtactt-ggaatgc---aaaggtgagtaagacaaattctcagtgagcttactttctagttgaggaataca-atGT----TA-TTAAAT----ATAATGTGTTATAATACAGACATGATGAAGTACTGAGGCAACATGGGGTT---------ACTAGTATTTTAGC-----CTCACTTTACAG---AAAAAAAACTGAC-----CAaaaatattgatatta-atattat----agg--------------------------------------------------------------------------------------------------------------------------------------------------------gcagttttaacaattaaatgagagattgtattaagttacttagtacaatgacagcccatagtag-----------ggagtccataaat----gttatttc-AAAGAGGTagcatagagtaacag---tttggagaatggattctgt-atcaaaccttttggcttggatcctggc-----tacgtcttagtttgtgtggcctcgggaaagttatatgat------atatctaga---------tctcagtttccccagggctaagatgggaat--aa-----caatcataaccacttctcag-------------------ggttgttgttttgagaatcaagtT----------GTCACAGATGTTCAAAAGAA---G-------------------------------------TTATTCATGGC--AAAGATCAAAGCTGGG--AGCAGGTCCAGAA---ACTATAT-----CCCACCAAAC---------TTATAGTTATCCTC-----------TCATAAAATAGA---GATACTGTGGCCCTGA------AGAGTGAG-ATGTCCT-C-ATTTTT-ACCA------TAGGGAGG-AGA-------------ACTCCCTAGCAAATAGTTCAAGCTAGGAGAAGGCAGCAAAGAATATTTGGCATCTTGAAGGTTAGAG------GGAAAACTGGCCTGAAGAGAG-ACGGCCAAAAAGAG-AGGGAAAGCATGGT-ATGACACCAATAGGGGTTAGGGG-----------AATGCG----------------ACTTGGG--CAGAGGTCGGACTGAACAAAGCAGAGGGA---AACGGCTTCAAGAAGA----------GAGGAGG------AATATG-----CCATCCACACATC----------TCCTAGCACTAAATAC--GGGATAATCTTTCCAATATGTCCAATCTGTATT-TTGCTAAGTGGGGGGTATTTATTTTTATTGGATAATTCCTAAAATGTTATAAACAGAGCT-TAACTAAGTAAGAGTATCCAAAATAGCCCAATAATT------------------------ATCTTTCCAGGTGTCT---GGTACCA--ACATGC-TCTT-T-TCTCTCATTTGGATTCCCAC-AAAG-AAACTGTTGGACATGAAAAAAAGAGGCAGATATTGGTTCATAAT-ATGTCTCAT-GATACTGAGAGAATTTTCCTGATTGCAAT-TTTTCA--------TTTCA------TTTTTTG-----------AATG--AATGATTTAAAT-GTTCTTT---CT--GTACATAATGGGACAGgaattgtataactattacc-acaatccaattttagaacattttcaGAGAATGA-AGGAG----T--TTTAAC-----CTGTGATTTAAATGCTACCAGTTT--ATGGATCTCTGTTCTTGTACCAGAGACAATCTGAAGATTC-TCTCCAGAAGTAAACATCCTAACC------------AGCAATCACCAA------CATTAAAACATGAGCCTGTTTTACTCTTTGAG----TGGCTAGC----TTCCTGTGAAAGAAT-ATACATTGCCTCTCTT---CTTTTGTTACCTTTCTGATAATATTGGCTATGCTGTAGGCCAATGTATTAC-ATTAGAGAGCATTTCGAGG-AAAAAGTCCC-----TT------AAAGCTCCTTATATAT-ATTA---CAATTTTCTGCTATACATCATTATTACTAAAATGATTCACAGCTAGTG----TAGCATGTTTAGGCAAGCTCAGATACTTGGCAGTAG-AACACAATTCTTTT---A--ATAGCCTAGC--TCCAATGGGTAACCCTTTG---AAAAAGGCATTTATTGTTAGTTCTGTTAGCTATTGAAC-CAGTCTTTGCATACTTCGATGCATAAGCATAC-AAAT-GGA-AAT-----TTTTATTTTAAGTTCTGTGCTATA-CTTTGCATATGAAAC-AGAAGTTCTT-TAACTATACTGT-GGGA--AATTCAAATGTATTTCCTCCTCTA-GAAGGAAAATTAATCTGAGAACAAGAGT-CTACTTTGAGATTGTATAGAAAGG-GCAAATAT--ACCCTCTGATAT--------GCTGCTTAGTCCTGATCCCCACCCCACCTC-----ATTCCAGTACCCTCATTAACAAGAAGCTGTCAAAATACTTGAACATCATGAAATAAGAATGGTATTTCAACAAAAGATCAAATGCTTAGAAATC-------CACACCCCA-AACCA------------------------------------GGTTATTCTTTCATTCCTAAATCAATAAGCCGGCAAAAAC-AAGACCATATTT-----GAGCT-GGC-AAAACC-------TCCTATGC------------CCTTACATTCT--------GTGAAAACATAA----AAGG-AAAAAA-----GAA-TTCTTCCACATTCTT--CATGCGGTTTTC-CATG---AAAGCACTCATT-AAATGATGTTTACATATAATGATG--ACAGAGTG--TAGATGGGTGTACTGCTTGGCATTGGAAGGGCAGTGCCCT--GGAGTC-TT--CCTCCAGTTCAATCTTGAAAA-A-A----------------- s rheMac2.3 97110853 2888 - 196418989 GATCACATTTTCTAGAAGGATTAATGTTCTGTAGATCTATTGATCTTCTACATT--CTTCTTAAAGTAT----CCAGGGTAA---TCATTAACAATACTTTGTTTTGATTTACTTGCCTGGTGTCTGAGGCTC-TTCCAGCTCTCTAC--AATACA------------------TTTGCGCCTT--ATTCATCATGCTTATTCTGTAG---ATAAAGA-CAACA--------------CATTACTGGCATTT----GTAATT--GG---GAGGCTTAAAATTTTT--------------------------------------------------------------------------------------------------AAAAATAAAATTAGAGATAATCT--------------AATTTTTAGATTAGGGTTAGATT-------------------------------------------------------------------------TTTTTAAATAG----------------------------------------------------GGTATA-----GAACTT--CAAA-AGATGGTGG-TTTTCTCTTTCCCTGGAAATATTCAGAA-------------------------------------AACAG--------------------------------TCTACCTTTGGT----TGG--GAAGCACAGGCAAGGGCAGCAATTCAAGAAACCACTGTA-AAAATGCACATCTCA--------------CCCAGTAA-AGGAGAG-ATCTTACTTCCTATTAAG---C--ATAGTTAGATGGGTGATTATTATTAATCATATATCACA-TTTACATAACAATGAAA-TTTGGATGGCACTA------T--CATAC--ACTGTCTCATTTACCATATGAAGGAAGC------------ATGT----ATTCATTCCTCAAATATTTTATGAATGCCTACTAGGTGCCAGACAGCATACTTTGTACTT-GGAATGC---AAAGGTGAGTAAGACAGATTCTCAGTGAGCTTACTTTCTAGTTGAGGAATACA-ATGT----TA-TTAAAT----ATAACGTGTTATAATACAGACATGATGAAGTCCTGAGGCTACATGGGGTT---------ACTAGTATTTTAGC-----CTCATTTTACAGGAAAAAAAAAACTGAC-----CAAAAATATTGA---CA-ATATTAT----AGG--------------------------------------------------------------------------------------------------------------------------------------------------------GCAGTTTTAACAACTAAATGAGAGATCGTATTAAGTTACTTAGTACAATGACAGCCCATAGTAG-----------GGAGTCCACAAAT----GTTATTAT-AAAGAGGTAGCATAGAGTAATAG---TTTGGAGAATGGGTTCTGT-ATCAAACCTTTTGGCTTGGATCTTGGT-----TATGTCTTAGTTTGTGTGGCCTTGGGAAAGTTATATGAT------ATATCTAGA---------TCTCAGTTTCCCCAGGGCTAAGATGAGAAT--AA-----CAATCACAACCACTTCTCAG-------------------GGTTGTTGTTTTGAGAATCAAGTT----------GTCACACATGTTCAAAAGAA---G-------------------------------------TTATTCATGGT--AAAGATCAACGTTGGG--AGCAGGTTCAAAA---ACTATAT-----CACACCAAAC---------TTATAGTTAGCCTC-----------TCATAAAATAGA---AATATTGTGGCCCTGA------AGAGTGAA-ATGTCCT-T-ATTTTT-ACCA------T---GGGG-AGA-------------ACTCCCCAGCAACGAGTTCAAGCTAGGAGAAGGCAGCAAAGAATATTTGGCATCTTGAGGGTTAGAG------AGAAAACTGGCCTGAAGAGAG-AGGGCCAAAAAGAG-AGGGAAAGCATG-----GACACCAGCAGGGGTTAGGGG-----------AATGGG----------------ACTTGGG--CAGAGCTTGGACTGAACAAAGCAGAGGGA---AATGACTTTAAGAAGA----------GAGGAGG------AATATA-----CCATCCACACATC----------TCCTAGCACTAAATAA--GAGATAATCTTTCCAATATATCCAATCTGTATT-TTGCTAAGTGTAGGGTATTTATTTTTATTGGATAATGCCTCAAATGTTATAAACAGAG------CTAAGTAAGAGTATTCAAAATAGCCCAATAATT------------------------ATCTTTCATGGTGTCT---GGTACCA--ACATGC-TCTT-T-TCTCTCATTTAGATTCCCAC-AAAG-AAATTGTTGGACATG--AAAAAGAGGCAGATATTGGTTCATAGT-ATGTCTCAT-GATACTGAGAGAATTTTCAAGATTGCAAT-TTTTCA--------TTTCATTTTTTTTTTTTG-----------AATG--GCTGGTTTAAAT-GTTCTTT---CT--GTACATAGTGGGACAGGAATTGTACAACTATTACT-GCAATCCAATTTTAGAACATTTTCAGAGAATGA-AGGCG----T--TTTAAC-----CTGTGATTTAAATGCTACCAGTTT--ATGGATCTCTGTTCTTGTACCAGAGACAATCTGAAGATTC-TCTCCAGAAGTAAACATCCTAAAC------------AGCAATCATCAA------CATTAAAACATGAGCCTATTTTACTCTTTGAG----TGGCTAGC----TTCCTGTGAAAGAAT-ATACATTGCCTCTC--------TTGTTACCTTTCTGATAACATTGGCTATGCTGTAGGCCAATGTATTAC-ATTAGAGAGCATTTCGAGG-AAAAGGTTTC-----TT------AAAGCTCCTTATATAT-ATTA---TGATTTTCTGCTATACATCATTATTACTAAAATTATTCACAGCTAGTG----TAGCATGTTTAGGCAAGCTCAGATACTTGGCAGTAA-AACACAATTCTTTT---A--ATAGCCTAGC--TCCAATGGGTAACCCTTTG---AAAAAGGCATTTATTGTTAGTTCTGTTAGCTATTGAAG-CAGTCTTTGCATACTTTGATGCATAAGCATAC-AAAT-GGA-AAT-----TTTTATTTTAAGTTCTATGCTATA-CTTTGCATATGAAAC-AGAAGTTCTT-TAACTATATTGT-GGGA--AATTAAAATGTACTTCCCCCTCTA-TAAAGAAAATTAATCTGAGAACAAGGGT-CTACTTTGAGATTGCATAGAAAGG-GCAAATAT--ACGCTCTGATAT--------GCTGCTTAGTCCTGATCCCCACCCCACCTC-----ATTCCAGTACCCTCATTAACAAGAAGCTGTCAAAGTACTTGAACATCATGAAATAAGAATGGTATTTCAATAAAAGATCAAACGCTTAGAAATC-------CACACCTCA-AACCA------------------------------------GGTTATTCTTTCATTCCTAAATCAATAAACTGGCAAAAAC-AAGACCATATTT-----GAGCT-GGC-AAAACC-------TCCTATGC------------ACTTACATTCT--------GTGAAAACATAA----GAGG-AAAAAA-----GAA-TTCTTCCATATTCTT--TACATGATTTTC-CATG---AAAGCACTCATT-AAATGATGTTTACATATAATGATG--ACAGAGTG--TAGATGGGTTTACTGCTTGGCATTGGAAGGGCAGTGCCCT--GGAGTC-TT--CTTCCAGTTCAATCTTGAAAA-A-A----------------- a score=-7.2 s hg18.7 26926968 68 + 158821424 tttttttat-------------------tattatactttaagttttagggtacttgt----------------gcacaatgtgc--aggtttgttacatatatat s panTro2.7 27263209 68 + 160261443 tttttttat-------------------tattatactttaagttttagggtacttgt----------------gcacaatgtgc--aggtttgttacatatatat s rheMac2.unknown 0 0 + 0 --------------------------------------------------------------------------------------------------------- a score=2445.8 s hg18.7 26927068 1183 + 158821424 taactgtcctttTAGTTT---------------TTAGTGTACAAACTTGGC--TCAA--ACCATA---------------CTATAAAGTACTT-TTGTA-------------TG-AAGAC---TGCCA--T-------------AAAAAAA-----------------------------------------ATCAC------TGC------------------AGAATGCTCCACTGTC---------AGTTAGAGTCCGCACAAGCTAATGCAAGCAAGTTATGCA-CATTAA------AATAAACAGTAGAGAATTGGGTGTGAAAACAGTATCAATCAGGCGTGTCCATCTGA-CCATT------------------ATAAC-TTTAAAATATCTGTAGAGCAAAGCCAGTTTTC-GTCAAGGTCACTTACTGCTCAGA--AA-AAGC-TTTTCAGCTTCAATAAAA--A-CAT---CGA---AGAAACAAA-----ATAAGG-TTTTAAAAAAA-------TGATGTTCAAA-----TAGGTGTG-TTTC-ATTTTATGTCACCTG-T--AAGAA----------------------GCAGGG---T-TTCCATCTAACATGAGATTCCCA--TTCC------TATTCCTCTGTA-----AAGGTACAGTTCTGATAAGTTC-----------------------AAGGACA--TGTTTGAAAAA---TGAATA---------ATCACCTATATTAT-------TATTTCTTTGAG-AG-CTAA------TGTGGCTTTTATT---GAA-GGAAGTCGCCTGAAAGGCTTTTATTGGACAAGCTGTATGCTTGT--CCCC-----CAGAGAGCTG--CCCCACAAAAATTCCTCAGAATATGAAAAC-TCTCCTA----TTAGCATTAAATTT-----CAGGCATTATATCTTCAGAAAGGCCTTGTTAA--ATTTACATTTGCT-GTCTAT-TGCAGTCTGTAAG-GTTTAACGC----CAAGCGCTGGATATTTAGATTAGCCCTCTCAATCTCCATTTTACTATCCTTCTCTTTGGAGGGATTAGAT-AGCTAaacaca-gtttttca-gagcacagactctgaaagtc-aagaattggccttgccacttaatag-------tatga--ctggtcagcttat-acttaCATGGTAG-CCTTTCC----AGAATACTCTGAGAAACA------C--TATAAAGTGATAGGGATGAAG------------AAACT---------------------------GAGCTTATTGA-AAATGGAAGAACCAAATAGT------------------------------AGACTGGTAGCTCCTAACCAGGGAAA-CAA----AG----------------------------CAGTCCAC-AGTTCCTGAGAGATT----------GTGGCCCCAGGCTAAGAAGGTTAACTTACAGTTTCTCAAGTATAAAAtaaggatgaaactaatagta-----tccaa----------------------------------------------------gtgctcgg-caca----gtgcccag-cacacagtaagagcccaaaagatgttagctattttt--------------------------------T------------TCCTTAGGTCCTTAAGAGGCTCTGGC------------AGCTG--------A--GAAAGAATGAAAAAGGGCAGGAG s panTro2.7 27263309 1183 + 160261443 taactgtcctttTAGTTT---------------TTGGTGTACAAACTTGGC--TCAA--ACCATA---------------CTATAAAGCACTT-TTGTA-------------TG-AAGAC---TGCCA--T-------------AAAAAAA-----------------------------------------ATCAC------TGC------------------AAAATGCTCCACTGTC---------AGTTAGAGTCCGCACAAGCTAATGCAAGCAAGTTATGCA-CATTAA------AATAAACAGCAGAGAATTGGGTGTGAAAACAGTATCAATCAGGCGTGTCCATCTGA-CCATT------------------ATAAC-TTTAAAATATCTGTAGAGCAAAGCCAGTTTTC-ATCAAGGTCACTTACTGCTCAGA--AA-AAGC-TTTTCAGCTTCAATAAAA--A-CAC---CGA---AGAAACAAA-----ATAAGG-TTTTTAAAAAA-------TGATGTTCAAA-----TAGGTGTG-TTTC-ATTTTATGTCACCTG-T--AAGAA----------------------GCAGGG---T-TTCCATCTAACATGAGATTCCCA--TTCC------TATTCCTCTGTA-----AAGGCACAGTTCTGATAAGTTC-----------------------AAGGACA--TGTTTGAAAAA---TGAATA---------ATCACCTATATTAT-------TATTTCTTTGAG-AG-CTAA------TGTGGCTTTTATT---GAA-GGAAGTCGCCTGAAAGGCTTTTATTGGACAAGCTGTATGCTTGT--TCCC-----CAGAGAGCTG--CCCCACAAAAATTCCTCAGAATATGAAAAC-TCTCCTA----TTAGCATTAAATTT-----CAGGCATTATATCTTCAGAAAGGCCTTGTTAA--ATTTACATTTGCT-GTCTAT-TGCAGTCTGTAAG-GTTTAACGC----CAAGCGCTGGATATTTAGATTAGCCCTCTCAATCTCCATTTTACTATCCTTCTCTTTGGAGAGATTAGAT-AGCTAaacaca-gtttttca-gagcacagactctgaaagtc-aagaattggccttgccacttaatag-------tatga--ctggtcagcttat-acttaCACGGTAG-CCTTTCC----AGAATACTCTGAGAAACA------C--TATAAAGTGATAGGGATGAAG------------AAACT---------------------------GAGCTTATTGA-AAATGGAAGAACCAAATAGT------------------------------AGACTGGTAGCTCCTAACCAGGGAAA-CAG----AG----------------------------CAGTCCAC-AGTTCCTGAGAGATT----------GTGGCCCCAGGCTAAGAAGGTTAACTTACAGTTTCTCAagtataaaataaggatgaaactaatagta-----tccaa----------------------------------------------------gtgctcgg-caca----gtgcccag-cacacagtaagagcccaaaagatgttagctattttt--------------------------------T------------TCCTTAGGTCCTTAAGAGGCTCTGGC------------AGCTG--------A--GAAAGAATGAAAAAGGGCAGGAG s rheMac2.3 97116989 1162 - 196418989 TAACAGTCCTTTTAGTTT---------------TTAGTATACTAACTTGGC--TCAA--ACCATA---------------CCATAAAGTACTT-TTGTA-------------TG-AAGGC---TGCCA--T--------------AAAAAA-----------------------------------------ATCAC------TGC-----------------------------------------------AGAGTCAGCACAAGTTAATGCAAGCAAGTTACGCA-TGTTAA------AATAAACAGCAGAGAATTGGGTGTGAAAACAGTATTAACCAGGTGTGTCCATCTGA-CCATT------------------ATAAC-TTTAAAATATCTGCAGAACAAAGCCAGTTTTT-GTCAAGGTCACTTACTGCTCAGA--AA-ATGC-TTTTCAGCTTCAACAGAA--A-CAT---CCA---AGAAACAAA-----ATAAGGTTTTTAAAAAAA-------TAATGCTCAAA-----TAGGTGTG-TTTC-ATTTTACATCACCTG-T--AAGAA----------------------ACAGGG---T-TTCCATCTAACATGAGATTCCCA--TTCC------TATTGCTCTGTA-----AAGGCACAGTTCTGATAAGTTC-----------------------AAGGAGA--TGTTTGAAAAA---TGAATA---------ATCACCTATATTAT-------CATTTCTTTGAG-AG-CTAA------TGTGGCTTATATT---GAA-GGAAGTCGCCAGAAAGGCTTTTATTGGACAAGCTGTGTGCTTGT--CCTC-----CAGAGAGCTG--CCCCACAAAAATTCCTCAAAATATGAAAAC-TCTCCTA----TTAGCATTAAATTT-----CAGGTATTATATCTTCAGAAAGCCCTTGTTAA--ATATACATTTGCT-GTCTAT-TGCAGTCTGTAAG-GTTTAACAC----CATGTGCTGGATATTTAGATTAGCCCTCTCAATCTCCATTTTATTAGCCTTCTCTTTGGAGACATTAGAT-AGCTAAACACA-GTTTTTCA-GAGCACAGACTCTGAAAGTC-AAGAATTGGCCTTGCCACTTAATAG-------TATGA--CTAGTCAGCTTAT-ACTTACATGGTAG-CCTTTCC----AGAATACTCTGAGAAACA------C--TATAAAGTGATAGGGATGCAG------------AAACT---------------------------GAGCTTATTGG-AAATGGAAGAACCAAATAGT------------------------------AGACTGGTAGCTCCTAACCAGAGAAA-CAG----AG----------------------------AAGTCCAC-AGTTCCTGAGTGATT----------GTGGCCCCAGGCTAAGAAAGTTAACTTACAGTTTCTCCAGTATAAAATAAGGATAAAACTAATAGTA-----TCCAA----------------------------------------------------GTGCTCAG-CACA----GTGCCCAG-TACACAGTAAGAGCCCAAAAGATGTTACCTATTTTT--------------------------------T------------T-CTTAGGTCCTTAAGAGGTTCTGCC------------AGCTG--------A--GAGAAAATGAAAAAGGGCAGGAG a score=1349.4 s hg18.7 26928251 501 + 158821424 CGAAAAGAAAGAAGGCCAAGGGGAATAAGGT---------GGCTCCAGCCCCTG--CTGTCGTGATGAAGCAGGAGGTTAAGAAAGTGGTGAATCCCCTGCTTGAGAAAAGGCCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAGACCTCACTTGCTTCAAGAAATGGTCCCACTATATCAGGTTGCAGTGGCAGAGAGTCATCCTCTGTAAGTGGCTGAAAGTGCATCCTGAAATTAACCAGTTCACCCAGGCCCTGCACCACCAAACAGCTACTCAGTTGCTTCAGCTGGCCCACAACTACAGACCAAACAAGAGAAAGACAAAGCAAGAGAAGAAGCAGAGGCTGTTGGTCCGGGCTGAGAAGAAAGCTTGCAGCAAAGGGGACATCTCCACTAGGAGACCACTTGTCCTTCAAGCAGGA---GTTAACACC-------GTCACCACCTTGGTGGAGAACAAGAAGGCTCAG-CTGGTGGTGACTGTACATGATGTGGATCCCAT--CAAG-C s panTro2.7 27264504 501 + 160261443 CGAAAAGAAAGAAGGCCAAGGGGAATAAGGT---------GGCTCCGGCCCCTG--CTGTCGTGATGAAGCAGGAGGTTAAGAAAGTGGTGAATCCCCTGCTTGAGAAAAGGCCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAGACCTCACTTGCTTCAAGAAATGGTCCCACTATATCAGGTTGCAGTGGCAGAGAGTCATCCTCTGTAAGTGGCTGAAAGTGCATCCTGAAATTAACCAGTTCACCCAGGCCCTGCACCACCAAACAGCTACTCAGTTGCTTCAGCTGGCCCACAACTACAGACCAAACAAGAGAAAGACAAAGCAAGAGAAGAAGCAGAGGCTGTTGGTCCGAGCTGAGAAGAAAGCTTGCAGCAAAGGGGACATCCCCACTAGGAGACCACTTGTCCTTCAAGCAGGA---GTTAACACC-------GTCACCACCTTGGTGGAGAACAAGAAGGCTCAG-CTGGTGGTGACTGTACGTGATGTGGATCCCAT--CAAG-C s rheMac2.3 97118163 497 - 196418989 CGAAAAGAAAGAAGGCTAAGGGGAAGAAGGT---------GGCTCTGGCCCCTG--CTGTCGTGAAGCAGCAGGAGGTTAAGAAAGTGGTGAATCCTCTGTTTGAGAAAAGGCCTAAGAATTTTGGCATTGGACAGGACATCCAGCCCAAAAGAGACCTCACTTGCTTCATGAAATGGTCCCACTATATCAGGTTGCAGCAGC----AGTCATCCTTTATAAGCGGCTGAAAGTGCCTCCTGCAATTAACCAGTTCACCCAGGCCCTGCACCGCCAAACAGCTACTCAGTCGCTTAAGCTGGCCCACAACTACAGACCATAAAAGAGAAAGACAAAGCAAGTGAAGAAGCAGAGGCTGTTGGTCCGGGCTGAGAAGAAAGCTTCCAGCAAAGAAGACATCCCCACTAGGAGACCACTTGTCCTTCAAGCAGGA---GTTAACACC-------GTCGCCACCTTGGTGGAGAACAAGAAGGCTCAA-CTGGAGGTGACTTCACATGATGTGGATCCCAT--CAAG-C a score=2505.4 s hg18.7 26928752 2590 + 158821424 TTGTCTTCCTACCTGCCTTGTGTCATAAAATGG----GGGTCTCTTCCCCTGCATTATCAAGAGGAAGGCAAGACTGGGACATATAGTCCACAGGAAGACCTGGATCACTGTCACCTTCACACAGGTGAACTTG------GAAGACAAAGAAGCTTTG--GCTAAGCTAGTGGAAGCTATCAGGACCAACTACAACAACAGATACGATGAGATCTGCCGTCACTGGGGAGGCAATGTCCTGGGTCCCAAATCTGTGG-CTCGCATTGCCAAGCTTGAAAAGGCAAAGGCTAAAGAACTTGCCACCAAACT--GGGTTAA--ATGCAC----ACTGTTGAGAT-TTCTGTACataaaaataattaaaataatacaaattttaaGAAAAAGAAAAAGGGCAGGAGACCACCCATTG---CAGTGGGCTATGCACTGGCTGAAGAATCC-ttttttttt----tttttttttttgagacggagtcttg-ctctgtcacccaggctggagtgcagtggcatgatcccagctcactgcaaactctaccccccgggttcaagtgattcttctgcctcagctgggattacag--------tgattcttctgcctcagctgggattacaggcacctgccaccatgcccggctaatttttatatttttagtagtgacggagtttcaccatgttggtcaggctggtctcgaactcctggcctcaagtgatctgcccacttcagcctcccaaaAGAATCCTTCATCTTTAGTTTGCAGTGAGAA--AGAAAGAACCACATAAGACTCTGCAATGGAGATACTGGAGTACAAGATTAGCCAGGGACAAC-TTTCTAGTTTAATGTG-CAGA-GTTCTGT-GAATCTTTTTGTACTAA-----GTTTTCAGGAGTCTCCCC-------------ACCCTGAAT-TGGGTGTGCAGCCACTTTTTGAT--CCACTGGCACATAAggcagacact-------------gtg-ccta-gtctaaacaagaaatgtttctctcttcttccctggtaacaaaactccaatt--tgtattca-ggtttttgaaagag-atcccttgatttcaggaa--gggtagaccc-ctacctcaacaacaaggaatga-------------------------gctgaaattggtctaaatcagtcatagtaattttctt-ttctttcctcagggattggccaataagtgggcacatgactgaatcctggccaaggagacaaagggaaagtccactagggaaggctCTCT-TGCT-AATAAAAAGACAAGA--------------CTCCACAAGTAGAATGTCTCTACCAG---TCTTCCTTCTT---GTC-CTGAACATGGACATGG-----TGACTGGAGCCATGGTAGCTAT-ATTCTGGCCAggaaaatgatg---------------------------------------------------------------------------------------aa-gaagctggccct-gaaatcattggattactgaactgactc-aggcaactgcctacctccagacttcttgttatgtta--gaaatacaaag-ctc-atttgtttaggcctgta-------------cagatgacttttctatttcttgcagtcaaatgcattctGATACTGTGCTTTGTCTACTTATTTCTTAC-CTCT------GCCCTCTGACAGATGAGGCCCAACCCA-TTTTTCTTACTTGGCTTTATTTGAACAAAGATTCT-AATAAGCA-------CAAGAAACCAC------TCTGTTGAT-AACTCCTCTAATATAAAAGGAAAG-------AGTCATGTTCTGTAATAAGTATTTTGTATCCAATTGGTTTATAAATTGAAAACACAGTTTAAGCAGAAAGAT-AAAAT----CAA-ATACAGTCTCTTGCCTACTTACTTCTCATCTCTCTCTCT----CATTTAG-TTCAAAGAGACATAAAGTGACACCACTCCATCATTTTTGACAGAGCCACATGTGTAAT-GCAAAACATATGCTGAAGTTTTGTAATTACTTGGGTTCCTTGAGCAGAAGAGAAATGAGCTCATTGTATGTTCATGGTCTCTTCTCCT-------TCT-------GTGTCACCTGCTACCATACCAGGTTGATGCCCTCTCAGACATCAGTTACTACAAGCAATAATTA-TCATTATTATTCTAATGCCTTACATATGAATGCCGTTTGGC--AATATTTCAGAGTGCTTT----------TAAGTTAGTTCTCTCCCTGAAGGCTCACAACTCTACCACTTACCTGTCA-TATCA---CTCCCAT-------AAAAGATTACTGTAGAGACTCTGAGGGAAGGAATCCGCATTTTAGAGGAGAGATGTCATTTTCCTTCTCCCCTAAGTCTAGATCTGCTGCAGGCACAAATGGCCTCCTACTATCTGTTCAACCCCACTCCTCTCCTAAACTAATCATG-----ACCAGCACCAAGAGGGGTGTGGAGTTAGTCTTGCTGTCTATAGCAAAGTAAAAATTCACAAGCCTGCC-TATGGCCCTCTGGTCCTTCATCCTAGTGTAGG----TATTTTTCCCAC--TCTGATCAGACCTCTGCTAGGATTTTCTAAGGTGATATTGGAATCTCTTACTGGAAGAAGAGTTCTATTCGAATCTTGGGCCTGATTCACTGCCAAGCCTTTG-CTGATCACTTA-----GGCCCACAGACTAGATTTCTGTTCTAAACTGGA------------------TTGAt-cttctactaaaatgtaagtaatatgaagc----cagagaatgtgctgttattttac----tgcactatccctagcacataaaatagattctcattggttcacagcaagtgattggta-------aatatctgttgaatgaatgaatGACT--CT s panTro2.7 27265005 2590 + 160261443 TTGTCTTCCTACCTGCCTTGTGTCATAAAATGG----GGGTCTCTTCCCCTGCATTATAAAGAGGAAGGCAAGACTGGGACATATAGTCCACAGGAAGATCTGGATCACTGTCACCTTCACACAGGTGAACTTG------GAAGACAAAGAAGCTTTG--GCTAAGCTAGTGGAAGCTATCAGGACCAACTACAACAACAGATACGATGAGATCTGCTGTCACTGGGGAGGCAATGCCCTGGGTCCCAAATCTGTGG-CTCGCATTGCCAAGCTTGAAAAGGCAAAGGCTAAAGAACTTGCCACCAAACT--GGGTTAA--ATGCAC----ACTGTTGAGTT-TTCTGTACataaaaataattaaaataatacaaattttaaGAAAAAGAAAAAGGGCAGGAGACCACCCATTG---CAGTGGGCTATGCACTGGCTGAAGAATCCtttttttttt----tttttttttttgagacggagtcttg-ctctgtcacccaggctggagtgcagtggcatgatcccagctcactgcaaactctaccccccgggttcaagtgattcttctgcctcagctgggattacag--------tgattcttctgcctcagctgggattacaggcacctgccaccatgcctggctagtttttatatttttagtagtgacggagtttcaccatgttggtcaggctggtctcgaactcctggcctcaagtgatctgcccacttcagcctcccaaaAGAATCCTTCATCTTTAGTTTGCAGTGAGAA--AGAAAGAACCACATAAGACTCTGCAATGGAGATACTGGAGTACAAGATTAGCCAGGGACAAC-TTTCTAGTTTAATGTG-CAGA-GTTCTGT-GAATCTTTTTGTACTAA-----GTTTTCAGGAGTCTCCCC-------------ACCCTGAAT-TGGGTGTGCAGCCACTTTTTGAT--CCACTGGCACATAAggcagacact-------------gtg-ccta-gtctaaacaagaaatgtttctctcttcttccctggtaacaaaactccaatt--tgtattca-ggtttttgaaagag-atcccttgatttcaggaa--gggtagaccc-ctacctcaacaacaaggaatga-------------------------gctgaaattggtctaaatcagtcatagtaattttctt-ttctttcctcagggattggccaatgagtgggcacatgactgaatcctggccaaggagacaaagggaaagtccactagggaaggctCTCT-TCCT-AATAAAAAGACAAGA--------------CTCCACAAGTAGAATGTCTCTACCGG---TCTTCCTTCTT---GTC-CTGAACATGGACATGG-----TGACTGGAGCCACGGTAGCTAT-ATTCTGGCcaggaaaatgacg---------------------------------------------------------------------------------------aa-gaagctggccct-gaaatcattagattactgaactgactc-aggcaactgcctacctccagacttcttgttatgtta--gaaatacaaag-ctc-atttgtttaggcctgta-------------cagatgacttttctatttcttgcagtcaaatgcattctgattCTGTGCTTTGTCTACTTATTTCTTAC-CTCT------GCCCTCTGACAGATGAGGCCCAACCCA-TTTTTCTTACTTGGCTTTATTTGAACAAAGATTCT-AATAAGCA-------CAAGAAACCAC------TCTGTTGAT-AACTCCTCTAATATAAAAGGAAAG-------AGTCATGTTCTGTAATAAGTATTTTGTATCCAATTGGTTTATAAATTGAAAACACAGTTTAAGCAGAAAGAT-AAAAT----CAA-ATACAGTCTCTTGCCTACTTACTTCTCATCTCTCTCTCT----CATTTAG-TTCAAAGAGACATAAAGTGACACCACTCCATCATTTTTGACAGAGCCACACGTGTAAT-GCAAAACATATGCTGAAGTTTTGTAATTACTTGGGTTCCTTGAGCAGAAGAGAGATGAGCTCATTGTATGTTCATGGTCTCTTCTCCT-------TCT-------GTGTCACCTGCTACCATACCAGGTTGATGCCCTCTCAGACATCAGTTACTACAAGCAATAATTA-TCATTATTATTCTAATGCCTTACATATGAATGCTGTTTGGC--AATATTTCAGAGTGCTTT----------TAAGTTAGTTCTCTCCCTGAAGGCTCACAACTCTACCACTTACCTGTCA-TATCA---CTCCCAT-------AAAAGATTACTGTAGAGACTCTGAGGGAAGGAATCCTCATTTTAGAGGAGAGATGTCATTTTCCTTCTCCCCTAAGTCTAGCTCTGCTGCAGGCACAAATGGCCTCCTACTATCTGTTCAACCCCACTCCTCTCCTAAACTAATCACG-----ACCAGCACCAAGAGGGTTGTGGAGTTAGTCTTGCTGCCTATAGCAAAGTAAAAATTCACAAGCCTGCC-TATGGCCCTCTGGTCCTTCATCCTAGTGTAGG----TATTTTTCCCAC--TCTGATCAGACCTCTGCTAGGATTTTCTAAGGTGACATTGGAATCTCTTACTGGAAGAAGAGTTCTATTCGAATCTTGGGCCTGATTCACTGCCAAGCCTTTG-CTGATCACTTA-----GGCCCACAGACTAGATTTCTGTTCTAAACTGGG------------------TTGAt-cttctactaaaatgtaagtaatatgaagc----cagagaatgtgctgttattttac----tgcactatccctagcacataaaatagattctcattggttcacagcaagtgattggta-------aatatctgttgaatgaatgaatGACT--C- s rheMac2.3 97118663 1897 - 196418989 TTGTCTTCTTGCCTCCCTGGTGTCATAAAATGG----GGGTCTCTTCCCCTGCATTATCAAGAGGCAGGCAAGACTGGGACATATAGTCCACAGGAAGACCTGGACCACTGTGGCCTTCACACAGGTGAACTCG------GAAGACAAAGGAGCTTTG--GCTAAGCTGGTGGAAGCTATCAGGACCAATTACAACAACAGATACGATGAGATCTGCCATCACTGGGGAGGCAATGTCCTGGGTCCCAAATCTGTGG-CTCACATTGCCAAGCTTGAAAAGGCAAAGGCTAAAGAACTTG-CACCAAACT--GGGTTAA--ATGCAC----GCTGTTGAGTT-TTCTGTACATAAAAATAATTAAAATAATACAAATTTTAAGAAAAAGAAAAAGCATAGGAGACCACCCACGG---CAGTGGGCTATGCACTGGCTGAATAATCC-TTTTTTTTTATTATTTTGTTTTTTGAGATGGAGTCTTGCCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAACCTCTACCTCCCGGGTTCAAGTGATTCTTCTGCCTCAGCTAGGACTACGGGATCAGAACGATTCTTCTGCCTCAGCTGGGATTACAGGCACCTGCCACCATGCCCTGCTAATTTTTGTATTTTTAGTAGTGACGGAGTTTCACCATGTTGGCCAGGCTGCTCTCGAACTCCTGGCCTCAAGTGATCTGCCCACCTCAGCCTCCCAAAAGAATCCTTCATCTTTAGTTTGCAGTG------AGAAAGAACCACATAAGACTCTGCAATGGAGACACTGGAGTGCAAGATTAGCCAGGCACAAC-CTTCTAGTTTAATGTG-CAGA-GTTCTGT-GAATCTTCTTGTGCTAA-----GTTTTCAGGAGTCTCCCC-------------ACCCTGAATCTGGGTGTGCAGCCACTTTTTGAT--CCATTGGCACATAAGCC--ACACT-------------GTG-CCTA-GTCTAAAC-AGGAATGTTTCTCTCTTCTTCCCTGGTAATAAAACTCCAATT--TGTATTCA-GGTTTTTGGCAGAG-ATCCCTTGATTTCAGGAA--GGGTAGACCC-CTACCTCAACAACAAGGAATGA-------------------------GCTGAAATTGGTATAAATCAGTCATAGTAATTTCCTT-TTCTTTCCTGAGGGATTCGCCAATGAGTGGGCACATGACTGAATCCTGGCCAAGGAGACAAAGGGAAAGTCGACTAGGGAAGGCTCTCT-TCCT-AATAAAAAGATAAGA--------------CTCCACAAGTAGAATGTCTCCACCTG---TCTTCCTTCTT---GTT-CTGAACACAGACATGG-----TGACTGGAGCCACAGTAGCTAT-ATTCTGGCCAGGAAAATGACA---------------------------------------------------------------------------------------AA-GAAGCTGGCCCT-GAAATCATTAGATTACTGAACTGACTC-AGGCAACTGCCTACCTCCAGACTTCTTATTATGTAA--GAAATATGAAG-CTC-GTTTGTTTAGGCCTGTA-------------CAGATGACTTTTCTATTTCTTGCAGTCAAATGCATTCTGATACTGTGCTTTGTCTACTTATTTCTTAC-CTCT------GCCCTCTGACAGATGAGGCCCAACCCA-TTTTTCTTACTTGGCTTTATTTGAACAAAGATTCT-AATAACCA-------CAAGAAACCAC------TCTGTTGATCAACTCCTCTAATATAAAAGGAAAC-------AATCATGTTCTGTAATAAGTATTTTGTATCCAATTGGTTTATAAATTGAAAACACAAGTTAAGCAGAAAGAT-AAAAT----CAA-ATACGGTCTCTCCCCTACTTACTTCTCATCTCTCTCTCT----CATTTAG-TTCAAAGAGACATAAAGTGATACCACTCCATCATTTTTGACAGAGCCACATGTGTAAT-GCAAAACATATGCTGAAGTTTTGTAATTACTTGGGTTCCTTGAGCAGAAGAGGGATGAGCTTATTGTATGTTCATGGTCTCTTCTCCT-------TCT-------GTGTCTCCTGCTACCGTATCAGGCTGATGCCCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=892.8 s hg18.7 26931342 628 + 158821424 GATAACCATTCCTCACTAGAGGTTTCTGCTACTGTGTCCTAAACACCAGATTAAA--CCCCTTGGATACTGACATTAACCTAAGCCCATTCATAGCTGCCTTACCTCTTCAAATGACA-AATATGAGCTGTTAGACACCTCTTCACTACAGACCTCCTGTTTCCACTTTCTTTCCTTTTTCCTACTGACCCAGGCAAATGAGGCCTCAGGATGCCAAGCTCTCAGCTGGATCTGCCTAAAATACACCTTGATAAAACAAG--ACTTTAGAGAGATTATAATACCCTAACAGGGT----------------------AGTC----------------------------------------------------------------CCTAAAAGTTGAAGAACACTGAAAATAAACCTTGTCTCTTTTATTTCTC-------------cagatggccaatacatag-----atgaaaagacaatcaactgttatatattagctatcagggaaatgcaaatcaagacca-aataagatacctctttacaccctctaggatggctataatctaaaaagacc---aataacaagcgttgatgaggaggtagagatattggaaccctcatacattgttggagggaatgtaaaatagtgaagccactttagacaatggctgggcagttcctcaacatgttaaacatagagttaccacatgacccagcaaatgcactcctaggtattta s panTro2.7 27267595 627 + 160261443 -ATAACCGTTCCTCACTAGAGGTTTCTGCTACTGTGTCCTAAACATCAGATTAAA--CCCCTTGGATACTGACATTAACCTAAGCCCATTCATAGCTGCCTTACCTCTTCAAATGACA-ACTATGAGCTGTTAGACACCTCTTCACTACAGATCTCCTGTTTCCACCTTCTTCCCTTTTTCCTACTGACCCAGGCAAATGAGGCCTCAGGATGCCAAGCTCTCAGCTGGATCTGCCTAAAATACACCTTGATAAAACAAG--ACTTTAGAGAGATTATAATACCCTAACAGGGT----------------------AGTC----------------------------------------------------------------CCTAAAAGTTGAAGAACACTGAAAATAAACCTTGTCTCTTTTATTTCTC-------------cagatggccaatacatag-----atgaaaagacaatcaactgttatatattagctatcagggaaatgcaaatcaagacca-aataagatacctctttacaccctctaggatggctataatctaaaaagacc---aataacaagcgttgatgaggaggtagagatattggaaccctcatacattgttggagggaatgtaaaatagtgaagccactttagacaatggctgggcagttcctcaacatgttaaacatagagttaccacatgacccagcaaatgcactcctaggtattta s rheMac2.3 97120563 456 - 196418989 GATAACCGTTCCTCACTAGAGGTTTCTGCTACTGTGTCCTAAACATCAGATTAAA--CCCCTTGGATACTGACATTAACCTAAGCCCATTCATAGGCGCCTTACCTCTTCAAATGACA-AATGTGAGCTGTTAGGCACCTCTTCACTTCAGGCCTCCTGTTTCCACCTTCTTTCCTTTTTCCTACTGACCCATGCAGGTGAGGCCTCAGGATGCAAAGCTCTCAGCTGGACCTGCCTAAAATACACCTTGATAAAACAAG--ACTTTAGAGGGATTATAATACCTTTACCGGGT----------------------AGTC----------------------------------------------------------------CCTAAAAGTTGAAGAACACTGAAAATAAACCTTGTCTCTTTTATTTCTC-------------CAGATGGCCAATACGTAG-----ATGAAAAGACAATCAACTATTATATATTAACTATCAGGGAAATGCAAATCAAGACCA-AAGGAGACACCACTTTACACCCTCTAGGATGGCTATAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=-583.6 s hg18.7 26931970 506 + 158821424 ctc----------------aagagaaatgaaaacatatgtccacgcaaaact-tgtctgcaaatgcacacagcagcattattcattatgaccaaaaagtgaaaaaaaaag-taaatgaccatc-cactgat------gaga---aacaaaatgtgatatatctgtaga--tgaaatgatattgtgcaataaaaaggaataaag-tactgttata-aataacacaacatggatgaaccttggaaacgttatgccaagt-aaaaaaagccagacacaaaaga------------------------------ccacagcttatatgagtccattcacatgaaatgtccagaataggcaaagccatagagacaggaagtaaattaatgggtgtcaggggctgaggga--------aaga-------aaaatgagga-atgagtgctagtgagtacaagatttctatttgggggtgacaaaaatgttctaaaaccagaaaagagtaacagttgtacaactttttgagtataataaaaaccagcaattgtactttgttttctttttttgagacagagtctcactctgcca s panTro2.7 27268222 506 + 160261443 ctc----------------aagagaaatgaaaacatatgtccacgcaaaact-tgtctgcaaatgcacatagcagcattattcattatgaccaaaaagtgaaaaaaaaag-taaatgaccatc-cactgat------gaga---atcaaaatgtgatgtatctgtaga--tgaaatgatattgtgcaataaaaaggaataaag-tactgttata-aataacacaacatggatgaaccttggaaacattatgccaagt-aaaaaaagccagacacagaaga------------------------------ccacagcttatatgagtccattcacatgaaatgtccagaataggcaaagccatagagacaggaagtaaattaatgggtgtcaggggctgaggga--------aaga-------aaaatgagga-atgagtgctagtgagtacaagatttctttttgggggtgacaaaaatgttctaaaaccagaaaagagtaacagttgtacaactttatgagtataataaaaaccagcaattgtactttgttttctttttttgagacagagtctcactctgcca s rheMac2.3 97121479 524 - 196418989 CTCAAAAAAAAAAAAAAAAAAGAGAAATGAAAACATATGTCCATGCAAAACT-TGTCTGCAAATGCACACAGCAGCATTATTCATCATGACCAAAAAGTGAAAAAAAAAG-TAAATGACCATT-CACTGATAA-GTAGAGA---AACAAAATGTGATGTATCTGTAGA--TAAAATGATATTGTGCAATAAAAAGGAATAAAG-TACTGTTACA-AATAACACAACATGGATGAACCTTGGAAACAGTATGCCAAGC-AAAAAAAGCCAGACACAAAAGA------------------------------CCACAGCTTATATGAGTCCATTCACATGAAATGTCCAGAATAGGCAAATCCATAGAAACAGGGAGTAAATTAATGGGTGTCAGGGGCTGAGGGG--------AAGA-------AAAATGAGGA-ATGAGTGCTAGTAAGTACAAGATTTCTTTTT-GGGGTGACAAAAATGTTCTAAAACCAGAAAAGAGTAACATTTGTACAACTTTATGAATATAATAAAAACCACCAATTGTATTT--TTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTTG a score=7.2 s hg18.7 26932501 953 + 158821424 tcttggtttactgcaagctctgcctcccaggttcatgccattctcctgcctcagcctccagagtagctgggactacaggcgcccgtcaccacgactggctaattttttgta-ttttttagtagagacggggttttactgtgttagccaggatggtctcgatttcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgggattacagg-cgtgagccaccgcacccggccaattgtacattttaaaaagattaattttatagtatgtgaattatatctcaacaaagctgttaCAAAACAACAA---CAAA--CCTCCTCCTTTTACAATGTTTTTGGGGCCGGAAGACTAATATGAGATGAGGCTGAGATGAAAAC-TGGGTCTTCTG---CTTCTTCCC-TC-----TTCTTCCTTCCTTCCCACTGCTCCTCCCAATCACTCTATCACT---GTTGCCCTGAGGCACTCAC-CTGCTCCAT---CAGTCCCCAGA-AACAGTAACAGGTATAGAGGCAA--CAGAAAAATCA-CTTTAC---CA--TGCTCCCATTACTGCAGCCCATTAAAGCCAGGGACAAACTACCCTGGCTGTCCAAAA--GCAAAAAATGCCTTTG-TC-TAGGACA-----GCATTCTTCTCATAAATTACAATAATGCAAATGTA---------AAATA--TAAATT-TTTTCATCCTATTTGTGAACTA----AAACAAAATAC---------TTAAAACATTTTCATTTTACCTTTAATATATTCTTAAAGTAAAGATAATGGAAAT-CTGAATTATAAATTTTTT-ACTTACTCACCATTTAAACCACA---TTGTTTCTATTTTCTTTTCC------TCTTATTGCTGAGCAATGAAAATTCCTTTGTTACAAAATATAGAAAAAT---------ATGT-----TCCTTGGATAGTCTAACTTCCAGAACCACTATA---TATTCCATCTTTGCTTT-CAACAATTAATCCTCAGTCTAAAAGGGGAA--AACAAGATAATCCCTCATTTA s panTro2.7 27268753 958 + 160261443 tcttggtttactgcaagctctgcctcccaggttcatgccattctcctgcctcagcctccagagtagctgggactacaggcgcccaccaccacgactggctaattttttgta-ttttttagtagagacggggtttcactgtgttagccaggatggtctcgatttcctgacctcgtgatctgcctgcctcggcctcccaaagtgctgggattacagg-cgtgagccactgcacccggccaattgtacattttaaaaagattaattttatagtatgtgaattatatctcaacaaagctgttaCAAAACAACAA---CAAA--CCTCCTCCTTTTACAATGTTTTTGGGGCCGGAAGACTAATATGAGATGAGGCTGAGATGAAAAC-TGGGTCTTCTG---CTTCTTCCC-TCTTCTTTTCTTCCTTCCTTCCCACTGCTCCTCCCAATCACTCTATCACT---GTTGCCCTGAGGCACTCAC-CTGCTCCAT---CAGTCCCCAGA-AACAGTAACAGGTATAGAGGCAA--CAGAAAAATCA-CTTTAC---CA--TGCTCCCATTACTACAGCCCATTAAAGCCAGGGACAAACTACCCTGGCTGTCCAAAA--GCAAAAAATGCCTTTG-TC-TAGGACA-----GCATTCTTCTCATAAATTACAATAATGCAAATGTA---------AAATA--TAAATT-TTTTCATCCTATTTGTGAACTA----AAACAAAATAC---------TTAAAACATTTTCATTTTACCTTTAATATATTCTTAAAGTAAAGATAATGGAAAT-CTGAATTATAAATTTTTT-ACTTACTCACCATTTAAACCACA---TTGTTTCTATTTTCTTTTCC------TCTTATTGCTGAGCAATGAAAATTCCTTTGTTACAAAATATAGAAAAAT---------ATGT-----TCCTTGGATAGTCTAACTTCCAGAACCACTATA---TATTCCATCTTTGCTTT-CAACAATTAATCCTCAGTCTAAAAGGGGAA--AACAAGATAATCCCTCATTTA s rheMac2.3 97122028 429 - 196418989 TCTCGGCTCACTGCAAGCTCTGCCTTCCAGGTTCATGCCATTCTCCTGCTTCAGCCTCCCGAGTAGCTGGGACTACAGGTACCCACCACCACACCTGGCTAATTTTTTGTATTTTTTTAGTAGAGACGGGGTTTCACTGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGG-CATGAGCCACCGCACCCGGCCAATTGTACATTTTTAAAAGATTAATTTTATAGTATGTGAATTATATCTCAACAAAGCTGTTACAAAACAACAACACCAAA--CCTCCTCCTTTTACAATGTTTTTGGGGCTAGAAGACTAATATGAGACGAGGCTGAGATGAAAAC-TGGGTCTTCTG---CTTCTTCCC-TCTTCTTTTCTTTCTTCCTTCCCACTGCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=5630.0 s hg18.7 26933454 2374 + 158821424 AATGATCAATGGAA-GGAATTCATACAGAATAGCAGACAACT---------CTC-ACAAC------------TC-TA-TCATTCAGAACTTAACaaaa-----ttttta---aaataata----------------------------------------------------------------------------------tttCAGAAACACAAATATATCAATATTTTAACAGC--AAAATTTTCTGTCTCT---CCTAGGCTTCTAGCAC----ATATATATCTccattcttgagcc---t--ta-ctacatgccaggcactgtgctggtacttc--aca-tatg-ttatctaattttattctcattacaa-ttctT---TCTGTCAACCCAGGAGACTTCCAGTTTGAGACAAGAGAA-------AAAAGGGTGGT-AGT--CAA--CTCGGGAATTGAGTT-GGGG-TACCTGCA-TCAAA-----ATAT-CT--CTTTTGATT-TGTTATTTTAACTGAAATCCCACCA-TTAAAT------------CCCACCCCTGGA--TTTGACGATTTTTC------------------------TCTCTGG-CTTA--------------------AGCTAT-AATCAAACA-----GGACTGAAGTCTCATAGATTCTGGA-AGCTCAGATTTAAAGCAAGT-GTGGTAAGGATAGGCAATGGAGACC---AGAGAACCCAAA----G-CCTAACTCAGCAGTTTGGCCCAAGGAGCTGTCCCCATAT---G-------A-AGATCATTGGTCACAACTCTTATTTCTTAGAAGGCCCTGACAGATGTG-ATTCTA--CAAGGA--CAGAGTTG---TTTTCAGAGTCCCTAT-TTTCTTGGTTTGTTCATCTCCTACCTGCTAT-------TTCACTGGCTTCTGA-T-AAAAGATTGTT-TTTT-AAAAACTCTGTCTACCCACTactaaggctgagaaagtttgag----tgatttgcccagtatcacagagtaa-gtgatagaactaagtaagtgattgaaccctcacaa-agttggtgttctcaatt--actTCTCGGCATTTTTTTCCCACTATA-C------TAGT-ATAATT-CATGCATTGTTAAGAAGTAACCCAAAA-AATGTTTGTTTTG-GGTCCCTCCAACTACTTACTTT-ACTTCCCAAATATCATTTCCCTGATGCCTTCTCAAAACTGAC-TTT-CAAATT-GTTTTATTTATGC----------------------------------------------------------------------TTGGATGAAAA-ATGGCTAAATGGCTGGCT----TTCCCAGAATATCTTCA-TTTTGATAAAAACCAA-AATTTAA---ACTA--AAACAATGAAGATTTAACTTTAGAATTTCAAACATTATGAAGA--ATGGAGGTTAG-CTCAAAGTATGACT-AAGTGGATTTA-GCAGAAATA------------TCTTAAA--------------------------CTTGGAAAATATGA------------AAG----A-----CC------------------------------------------CTTCAGCAAA-CTGA-------AACTTG-TTTTCAGCATTATACTACTA-TAAATAGAACTATAGTTCAAAGAGGG------TTTTTT---------------------------------CC-AAGCTCCTAATTTAAATC-AGCAAAA------GAGTGG-----------TTTCAG-GTTCCCACAACA----CAAGCCATTTGATGGGATATTT---------TATC-A----AAAAATATG-AAAAA--C----------------------AATATTGCTGTG--ATGC----TTTTAAAGGGGAG--AT------A-AGAAGAATGGCTGTTAG--CCGAAAAGTCCTCTATTCTTGATTTAAAGAAA------AA-AGACAAG-AGGGAAAGCCATGCT---TTTTAAATTCTTCTCAGTCTGGTTTCTCTGACAAAC----CTGTTTGATAGGCATCAGGGACCTGAAGCAGTGCTTCCA-GGGAAA--------AAGTAGCCATCACTCATGGTTCATCGG-ATTTCTGTGACAGAATGATCACATTCT-GTA-GAACTTGGCATAAGCACATCATTATTAAGC-CTTGCTTTAGCATTTCTTAACTGATCACGG--ATGCCGCAGTCCTCGGTGGCTCCTCTCTGTTGGCAC----TGTTTGTAGTTATTTGACCTTTTCTCAGTGGATAATC-CACACAGAAAGCCCTAATTACTTCCCCAGCTTTGACCAG-CCAG-CAGTGTGAATAATCAATGACACTCATTTAGG--TATTGCACAGTCAGATGCTT-ATGGTGTTTAAAGAACA---TTTT---TCCTTTGACCTGCCACA-GCTGTAAGACAATTACAAGCAGTAAAGCTGCTGTTGTAATCACAAGATGACCAGGTGACCTTGTAGGTTTAAAGTTGATGACTGGGGCCTTGACTGGGAC---GTAGTCAAGATACAGAACATATTTTGG-GAGAGAAAGGAAGCTTCATTGTATACTAATGTGACATGCT-CAGCCCCAAG--------AGCAGTGT----TCTGAAATATTGACAAATCACAAGACTCATATTGGCAGGTAAAATTCAGCATTTATATCCATGGCCTC-AGCTACTTCTTTCCAT-T-GTACATAAAATAGTAAA----------------------TAAATAAGAATAGAAA----AAATACTGAAGTCTATCCATACC-TCTCT------CTAA-ACTT---TT----------------TAAGGTAGAAA------------------------------------------------TGAAGATAAAAAT--GGAAGT---AAGTTGTCCTATCTAAACAGATA-------------------------------------TTTACAGGTTTCTAGAATGTTAAATTTTTTTT---------AATGT-ATTCAAATTGC---AATG-AAT--CC---TTATGAACTCTCAGGCC-AACTTCC--------------CCCACAAAGATCACTATTAAAAA-------G-ATG---------------------------------------------------------------TGAGGTCTGGGGTT--CTTTGAAATAAT s panTro2.7 27269711 2372 + 160261443 AATGATCAATGGAA-GGAATTCATACAGAATAGCAGACAACT---------CTC-ACAAC------------TC-TA-TCATTCAGAACTTAACaaaa-----ttttta---aaataata----------------------------------------------------------------------------------tttCAGAAACACAAATATATCAATATTTTAACAGC--AAAATTTTCTGTCTCT---CCTAGGCTTCTAGCAC----ATATATATCTccattcttgagcc---t--ta-ctacatgccaggcgctgtgctggtatttc--aca-tatg-ttatgtaattttattctcattacaa-ttctT---TCTGTCAACCCAGGAGACTTCCAGTTTGAGACAAGAGAA-------AAAAGGGTGGT-AGT--CAA--CTCGGGAATTGAGTT-GGAG-TACCTGCT-TCAAA-----ATAT-CT--CTTTTGATT-TGTTATTTTACCTGAAATCCCACCA-TTAAAT------------CCCACCCCTGGA--TTTAACGATTTTTC------------------------TCTCTGG-CTTA--------------------AGCTAT-AATCAAACA-----GGACTGAAGTCTCATAGATTCTGGA-AGCTCAGATTTAAAGCAAGT-GTGGTAAGGATAGGCAATGGAGACC---AGAGAACCCAAA----G-CCTAACTCAGCAGTTTGGCCCAAGGAGCTGTCCCCATAT---G-------A-AGATCATTGGTCACAACTCTTATTTCTTAGAAGGCCCTGACAGATGTG-ATTCTA--CAAGGA--CAGAGTTG---TTTTCAGAGTCCCTAT-TTTCTTGGTTTGTTCATCTCCTACCTGCTAT-------TTCACTGGCTTCTGA-T-AAAAGATTGTT-TTTT-AAAAACTCTGTCTACCCACTactaaggctgagaaagtttgag----tgatttgcccagtatcacagagtaa-gtgatagaactaagtaagtgattgaaccctcacaa-agttggtgttctcaatt--actTCTCGGCATTTTTTTCCCACTATA-C------TAGT-ATAATT-CATGCATTGTTAAGAAGTAACCCAAAA-AATGTTTGTTTTG-GGTCCCTCCAACTACTTACTTT-ACTTCCCAAATATCATTTCCCTGATGCCTTCTCAAAACTGAC-TTT-CAAATT-GTTTTATTTATGC----------------------------------------------------------------------TTGGATGAAAA-ATGGCTAAATGGCTGGCT----TTCCCAGAATATCTTCC-TTTTGATAAAACCCAA-AATTTAA---ACTA--AAACAATGAAGATTTAACTTTAGAATTTCAAACATTATGAAGA--ATGGAGGTTAG-CTCAAAGTATGACT-AAGTGGATTTA-GCAGAAATA------------TCTTAAA--------------------------CTTGGAAAATATGA------------AAG----A-----CC------------------------------------------CTTCAGCAAA-CTGA-------AACTTG-TTTTCAGCATGATACTACTA-GAAATAGAACTATAGTTCAAAGAGGG------TTTTTT---------------------------------CC-AAGCTCCTAATTTAAATC-AGCAAAA------GAGTGG-----------TTTCAG-GTTCCCACAACA----CAAGCCATTTGATGGGATATTT---------TATC-A----AAAAATATG-AAAAA--C------------------------TATTGCTGTG--ATGC----TTTTAAAGGGGAG--AT------A-AGAAGAATGGCTGTTAG--CCGAAAAGTCCTCTATTCTTGATTTAAAGAAA------AA-AGACAAG-AGGGAAAGCCATGCT---TTTTAAATTCTTCTCAGTCTGGTTTCTCTGACAAAC----CTGTTTGATAGGCATCAGGGACCTGAAGCAGTGCTTCCA-GGGAAA--------AAGTAGCCATCACTCATGGTTCATCGG-ATTTCTGTGACAGAATGATCACATTCT-GTA-GAACTTGGCATAAGCACATCATTATTAAGC-CTTGCTTTAGCATTTCTTAACTGATCACGG--ATGCTGCAGTCCTCGGTGGCTCCTCTCTGTTGGCAC----TGTTTGTAGTTATTTGACCTTTTCTCAGTGGATAATC-CACACAGAAAGCCCTAATTACTTCCCCAGCTTTGACCAG-CCAG-CAGTGTGAATAATCAATGACACTCATTTAGG--TATTGCACAGTCAGATGCTT-ATGGTGTTTAAAGAACA---TTTT---TCCTTTGACCTGCCACA-GCTGTAAGACAATTACAAGCAGTAAAGCTACTGTTGTAATCACAAGATGACCAGGTGACCTTGTAGGTTTAAAGTTGATGACTGGGGCCTTGACTGGGAC---GTAGTCAAGATACAGAACATATTTTGG-GAGAGAAAGGAAGCTTCATTGTATACTAATGTGACATGCT-CAGCCCCAAG--------AGCAGTGT----TCTGAAATATTGACAAATCACAAGACTCATATTGGCAGGTAAAATTCAGCATTTATATCCATGGCCTC-AGCTACTTCTTTCCAT-T-GTACATAAAATAGTAAA----------------------TAAATAAGAATAGAAA----AAATACTGAAGTCTATCCATACC-TCTCT------CTAA-ACTT---TT----------------TAAGGTAGAAA------------------------------------------------TGAAGATAAAAAT--GGAAGT---AAGTTGTCCTATCTAAACAGATA-------------------------------------TTTACAGGTTTCTAGAATGTTAAATTTTTTTT---------AATGT-ATTCAAATTGC---TATG-AAT--CC---TTATGAACTCTCAGGCC-AACTTTC--------------CCCACAAAGATCACTATTAAAAA-------G-ATG---------------------------------------------------------------TGATGTCTGGGGTT--CTTTGAAATAAT s rheMac2.3 97122843 2404 - 196418989 AATGATCAGTGGAG-GGAATTCATACAGAATAGCAGACAACT---------CTC-AGAAC------------TC-TA-TCATTCAGAACTT-ACAAAA-----TTTTAA---AAATAATA----------------------------------------------------------------------------------CTTCAGAAACACAAATATATCAATATTTTAACAGC--AAATTTTTCTGTCTCT---CCTAGGCTTCTAGC------------TTCTCCATTCTTGAGCC---T--TA-CTACATACCAGGCACTGTGCTGGTACTTC--ACA-TATG-TTATCTCATTTTATTCTCATTACAA-TTCTT---TCTGTCAACCCAGGAGTCTTCCAGTTTGAGACAAGAGAA-------AAAAGGATGGT-AGT--TAA--CTGGGAAATTGAGTT-GGGG-TACCTGCT-TCAAA-----ATAT-CT--CT-----TT-TGTTATTTTACCTGAAATCCCACCA-TTAAAT------------CCCACCCCTAGG--TTTGAAGATTTTTC------------------------TCTCTAG-CTTA--------------------AGCTATAAATCAAACA-----GGACTGAAGTCTCATAGATTCTGGA-AGCTCAGATTTAAAGCAAGT-GTAGTAAGGATAGGCAATGGAGACC---AGAGAACCCAAA----G-CCTAACTCAGCAGTTTGGCCCAAGGAGCTGTCCCCATAT---G-------A-GGATCATTGGTCACAACTCTTATTTCTTAGACGGCCCTGACAGATGTG-ATTCTA--CAAGGA--CAGCGTTG---TTTTCAGAGTGCCTGT-TTTCTTGGTTTGTTCGTCTCCTACCTACTAT-------TTCACTGGCTTCTGA-T-AAAAGATAGTT-TTTTAAAAAATTCTGTCTACCCACTGCTAAGGCTGAGAAAGTTTGAGTAATTGATTTGCCCAATATCACAGAGTAA-GTGATAGAACCAAG-----ATTTGAACCCTCACAA-AGTTAGTGTTCTCAATT--ACTTCTCAGCATTTTTCCCCCACTATA-C------TAGT-ATAATT-CATGCATTGTTAAGAAGTAACCC-AAA-AATGTTTGTTTTG-GGTCCCTCCAACCACTTATTTT-ACTTCCCAAATATCATTTCCCTGATGCCTTCTCAAAACTGAC-TTT-CAAATT-GTTTTATTTATGC----------------------------------------------------------------------TTGGATGAAAA-ATGGCTAAATGGTTGGCT----TTCCCAGAATATCTTCA-TTTTGATAAAAACCAA-AATTTAA---ACTA--AAACAATGAAGATTTAACTTGAGAATTTCAAACACTATGAAGA--ATGGAGGTTAG-TTCAAAGTATGACT-AAGTGGATTTA-GCAGAAATA------------TCTTAAA--------------------------CTTGGAAAATATGA------------AAG----C-----CC------------------------------------------CTTCAGCAAA-CTGA-------AACATG-TTTTCAGCATTCTACTACTA-TAAATAGAACTATAGTTCAAAGAGGG------TTTTTT---------------------------------CC-AAGCTCCTAATTTAAATC-AGCAAAG------GAATGG-----------TTTCAG-GTTCCCACAACA----TGAGCCATTTGATGGGATATTT---------TATC-A----AAAAATATC-GAAAA--C----------------------AATATTACTGTG--ATGC----TTTTAAAGGGGAG--AT------A-AGAAGAATGGTT-TTAG--CC-AAAAGTCCTTTATTCTTGACTTAAATAAA------AA-AGACAAG-AGGGAAAGCCATACT---TTTTAAATTCTTCTCAGTCTGGTTTCTCTGACAAAC----CTGTTTGATAGGCATCAGGGACCTGAAGCAGTGCTTCCA-GGGAAA--------AAGTAGCCATCACTCATGGTTCATTGG-ATTTCTATGACAGAATGATCACATTCT-GTA-GAACCTGGCATAAGCACATCATTATTAAGC-CTTGCTTTAGCATTTCTTAACTGATCATGG--ATGCTGCAGTCCTTGGTGGCTCCTCTCTGTTGGCAC----TGTTTGTAGTTATTTGACCTTTTCTCAGTGGATAATC-CACACAGAAAGCCCTAATTACTTCCCCAGCTTTGACCAG-CCAG-CAGTGTGAATAATCAATGACACTCATTTAGG--TATTGCACAATCAGATGCTT-ATGGTGTTTAAAGAACA---TTTT---TCCATTGACCTGCCACA-GCTGTAAGACAATTACAAGCAGTAAAGCTGCTGTTGTAATGACAAGATGACCAGGTGACCTTGTAGGTTTAAAGTTGATGACTGAGGCCTTGACTGGGAT---GTAGTCATGATACAGAACGTATTTTGG-GAGAGAAAGGAAGCTTCATTGCATACTAACGTGACATGTT-CAGCCCCAAG--------AGCAGTGT----TCTGAAATATTGACAAATCACAAGACTCATATTGGCAGGTAAAATTCAGCATTTATATCTATGGCCTC------CTTCTTTCCAT-T-ATACATAAAATATTAAA----------------------TAAATAAGAATAGAAA----AAATATTGAAGTCTATCCATACC-TCTCT------CTAA-ACTT---TT----------------TAAGGTAGAAA------------------------------------------------TGAGTATAAAAGT--GGAAGC---AAGTTGTCCTATCTAAATAGATA-------------------------------------TTTACAGGTTTCTAGGAGGTTAAA-TTTTTTT---------AATGT-GTTCAAATTGC---AATG-AAT--CC---TCATGAACTCTCAGGCC-AACTTCC--------------CCCACAAAGAACACTATTAAAAA-------G-ATGTGCCGGGCGCAGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGGCCGAGGCGGGCGGATCATGAGGTCAGGAGAT--C----------- # synteny group 0 a score=6079.0 s hg18.7 26935828 6577 + 158821424 GACTAATTACCAAATTAC--ATATAA---------AGCTA-----TAACAT--AAGTTGTAGGAAAATGGAATA---TGA---TATTTCTAATAGAGTATTGTTCCTGGAAACA--C-------------------TAATGTATTGAAAATCCTTTGGAAACA-------AGGATtgatcatgtaaagtttgggaaacataggatac-gatacccttttcatggagatttacaatgtacaattagcatattaa-aggttctgGA--------ATGTGTT-TCTCAAAACAATT--TTGG-GAATGCTA---------------------GTTTATAGGTCTTTT-TTTCCTTGT------------------------------TATTACCATCTTAT----ATAAAAATTGAATTTA--T-AAATA-----------TGAGTTTTTGCCTC---AGAATGTG-AATGAGT--AG---ACTTTCTAC-----------------TTCACTTTTC-A-----------------------GAAAGTTTTG-----------------------TACTTATTTATTAAAAGGAA---CACAAAATAAGATCAG-T---AAAAACAATCAA-----------GAAAACAAGTTGG----TAGAACAATGAAACA-GTTA------------TGTTCCTGGC--------------AGAAAAGATGAAG-AAAAGGACATGTCCT-AAATTAGGGACACA--GCAG--AGGA-GAG-TTTTGGAATG-GAAAAGGCCTCAGATAAAGGA---AA-G----------G----AAGGGAAGGTGTGAGGTTA-ACACACAGA-CCATCTTCTCC-TTT----TTCAAA-CT--GAAGGCTGT-CCTGATTT--AATCTGGC-AAAAGAAGGCAAACCAG-CTCATCAGCAT-GCAATT-GATGATTTATCC-AGCTTGCTGTCAGACAGAGCACTGTGTAAAGA-CGCAGGAGAGAATGAGGAAAAACAGGCAAACCTTAGTGAGTAAGCCAAGAAGGCAAATC-------------ACT-A-AAAAAACACACACA-CAGT----AA-AAAGAC-TGCACATTTGCTGGTATGATCTTGATTAAT-C-CCAAAACAGCTGAAGCTTTC-ATGTTTG-----GGGCGACTAGGATGTGTAATG-CAAGTTT--------------------TTACTCATA-C--TAGCAGAATCCAATTCATAGTATTTGTA-GTAAACGAG-----CTGGT-TTTTAAAACATCACT-TT--TAGG-TTCAGCA-GGCAT--CACTGTGTTTTC-CTGTA-GTGTATGCCATGT-TTGAG-----T----G-ATATTT-ATAATTATTT-CCTTATATATG-TTTAT---------TGCTTTGTT-GGAAGGTGAGGCCTA-TATTTTTCTGCATTATACAG----------------------CACCCCAG---GA-TTAGGGTGGA-TTTACCTCT-TA-----TTCTGCAAT-ACTGTCTTTCAAGGACCCAGTAACTCTGTATAACTAGTTCCAGCTTGTAATGTGTCTGGGA-ATTTTTTG-AC------TTTTG-------GAATCCATTGATGTCCTC-----C-------------------------------------------------------------AG-----------------------------------AAACAATC---AT----------TCTTAAATGTTGCCAAACCATCAAGAATA-TGAGGTTATTA-TAAGGTCAGTAGTAACAGGCAGTTAG----AAACATAAGGGGAAA-TGGGTTGAG--AGGCA-GAGGCAGCAGCAGCATCAGGAACAT-TTACCCATGCATATTGCTGACCAAGTAATTTTTTCTGCAATTCTGTAAAACTC-AGTCTTTT------AATTAAA----------GGCCTCCCA---GTGAATGGGGCA----AGACAATGTGTGGAA--TGTATTCAG---GATTGCTACCTCTA----------GTCATACATTTT----ACCTCCT-C--------------------AA-CCCTTTAATGTCAGTTT-------A-----CAGCCTCTATATAACTGGTAGCACCATAGAT-CCCATTCTA-----AATCTGAGCAAGaaa------------------agaataaa----aaaaatga----------------------------------------------acaaag------------------cctc---------------------caaga--------aggctgggcgcagtggctcatgcctgtaatcccagaactttgggaggccgaggcgggtggatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaacctcatctctactaaaaatacaaaaatattagccagttgcggtggcgggtgcctgtagtcccagctactcgggaggctgagggaggggaatggcgtgaacccgggaggcggagtttgtagtgagccgagattgcgctactgcactccagcctgggtgatagtgcgagactccgtctc-aaaaaaaaaaaaaaaaaaaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgattggtgtacctgaaagtgacagggagaatggaaccaagatggaaaacactctgcaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacgccacaaagatactcctcaagaagagcaactccaagacacgtaattgtcagattcaccaaagctgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcaggttacccacaaagggaagtccatcagactaacagctgatctctcggcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaagaattttcaacccagaatttcatatgcagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctacaaaaactcctgaaggaagcactaaacatggaaaggaacagccggtaccagccactgcaaaaacatgccaaattgtaaagaccattgaggctaggaagaaactgcatcaactaacgagcaaaataactagctaacattataatgacagggtcaaattcatacataacaatattaaccttaaatataaatgggctaaatgctccaattaaaagacacagactggcaaattggatagagtcaagacccatcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaacaaaaaaaggcaagggttgcaatcctagtctctgataaaacaaactttaaaccaacaaagatcaaaagagacaaagaaggtcattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaacaaggatatccaggaattgaattcagctctgcaccaagctaacttaatagacatctacagaactctccaccccaaatcaacagaatatacattcttttcagcaccacacacacctattccaaaattgaccacatagttggaagtaaagcaatcctcagcaaacataaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaacaaactcactcaaaaccgctcaactacatggaaattgaacaacctgctcctgaatgactactgggtacataacgaaatgaaggcagcaatgaagatgttctttgaaaccaacgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatacccacaagagaaagcaggaaagatctaaaattgacaccctaacatcacaattaaaagaactagagaagcaagagcaaacaaattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagatagagacacaaaaaaacccttcaaaaaatcaatgaatccaggagctgcttatttgaaaagatcaacaaaattgatagactgcaagcaagactaataaagaagaaaagagagaagaatcaaatagatgcaataaaaactgacaaaggggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaacggataaattccttgacacacacaccctcccaagactaaaccaggaagaaattgaatctctgaatagatcaataacaggctctgaaattgaggcaataattaatagcttaccaaccaaaaaaaagtccaggaccagatggattcacagccgaattctatcagaggtacaaggaggagctggtatcattccttctgaaactattccaatcaatagaaaaagagagaatcctccctaactcattttatgaggccagcatcatcctgataccaaagcctggcagagacgcaacaaaaaaagagaattttagaccaatatccctgatgaacatcgatgcaaaaatcctcaataaaatactggcaaaacgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggtttcatccctgggatgcaaggctggttcaacatatgcaaatcaataaacataatccagcatataaacagaactaaagacaaaaaccacatgattatctcaatggatgcagaaaaagcctttgacaaaattcaacaaccttcatgctaaaaactctcaataaattaggtattgatgggacgtatctcaaaataataagagctgtctatgacaaacccacagccaatatcatactgaatgggcaaaaactgaaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcaggagaaggaaataaagtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatctagaaagccccatcatctcagcccaatatctccttaagctgataggcaacttcagcaaagtcacaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacactgataacagacaaacagagagtcaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaagggatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagacgatacaaacaaatggaagaacattccatgctcatgggtaagaagaaccaatatcatgaaaatggccatactgtccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacacaactggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttgaaactatactacgaggctacagtaaccaaaacagcatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaataatgctgcatatctacaaccatctgatctttgacaaacctgacaaaaacaagaaatggggtaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaataaattcaagatggagtaaagacttaaatgttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggcaaggacttcatgtctaaaacatcaaaagcaatggcaacagaagacaaaattgacaaatgggatctaattaaactaaagagcttcttcacagcaaaagaaactaccatcagaatggtagttctgtaggcaccctacagaatgggagaaagtttttgcaatctactcatctgacaaagggctaatatccagaatctacaaagaactgaaacaaatttacaagaaaaaaaacaaacaaccccatcaaaaagtgggcgaagggtatgaacagacacttctcaaaagaagatatttatgcagccaacacacacacgaaaaaatgctcatcatcactggccatcagagaaatacaaatcaaaaccacagtgagataccatctcacaccagttaggatggcaatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactaattcaaccattgtggaagtcagtgtggtgattcttcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaaacatgctgctataaagacacatgcacacgtatgcttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggatttagaaaatgtggcacatatacaccatggaacaccatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggataaagctagaaaccatcattctcagcaaactatcgcaaggacaaaaaa-caaacactgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacaccggggcctgttgtggggtggggggagggggaagggatagcattaggagatatacctaatgttaaatgaccagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcacgttgtgcacatgtaccctaaaacttaaagtataattaa s panTro2.7 27272083 6560 + 160261443 GACTAATTACCAAATTAC--ATATAA---------AGCTA-----TAACAT--AAGTTGTAGGAAAATGGAATA---TGA---TATTTCTAATAGAGTATTGTTCCTGGAAACA--C-------------------TAATGTATTGAAAATCCTTTGGAAACA-------AGGATtgatcatgtaaagtttgggaaacataggatac-gatatccttttcatggagatttacaatgtgcaattagcatattaa-aggttctgGA--------ATGTGTT-TCTCAAAACAATT--TTGG-GAATGCTA---------------------GTTTATAGGTCTTTT-TTTCCTTGT------------------------------TATTACCATCTTAT----ATAAAAATTGAATTTA--T-AAATA-----------TGAGTTTTTGCCTC---AGAATGTG-AATGAGT--AG---ACTTTCTAC-----------------TTCACTTTTC-A-----------------------GAAAGTTTTG-----------------------TACTTATTTATTAAAAGGAA---CACAAAATAAGATCAG-T---AAAAACACTCAA-----------GAAAACAAGTTGG----TAGAACAATGAAACA-GTTA------------TGTTCCTGGC--------------AGAAAAGATGAAG-AAAAGGACATGTCCT-AAATTAGGGACACA--GCAG--AGGA-GAG-TTTTGGAATG-GAAAAGGCCTCAGATAAAGGA----------------------AAGGGAAGGTGTGAGGTTA-ACACACAGA-CCGTCTTCTCC-TTT----TTCAAA-CT--GAAGGCTGT-CCTGATTT--AATCTGGC-AAAAGAAGGCAAACCAG-CTCATCAGCAT-GCAATT-GATGATTTATCC-AGCTTGCTGTCAGACAGAGCACTGTGTAAAGA-CACAGGAGAGAATGAGGAAAAACAGGCAAACCTTAGTGAGTAAGCCAAGAAGGCAAATC-------------ACT-A-AAAAAACACACACA-CAGT----AA-AAAGAC-TGCACATTTGCTGGTATGATCTTGATTAAT-C-CCAAAACAGCTGAAGCTTTC-ATGTTTG-----GGGCGACTAGGATGTGTAATG-CAAGTTT--------------------TTACTCATA-C--TAGCAGAATCCAATTCATAGTATTTGTA-GTAAATGAG-----CTGGT-TTTTAAAACATCACT-TT--TAGG-TTCAGCA-GGCAT--CACTGTGTTTTC-CTGTA-GTGTATGCCATGT-TTGAG-----T----G-ATATTT-ATAATTATTT-CCTTATATATG-TTTAT---------TGCTTTGTT-GGAAGGTGAGGCCTA-TATTTTTCTGCATTATACAG----------------------CACCCCAG---GA-TTAGGGTGGA-TTTACCTCT-TA-----TTCTGCAAT-ACTGTCTTTCAAGGACCCAATAACTCTGTATAACTAGTTCCAGCTTGTAATGTGTCTGGGA-ATTTTTTG-AC------TTTTG-------GAATCCATTGATGTCCTC-----C-------------------------------------------------------------AG-----------------------------------AAACATTC---AT----------TCTTAAATGTTGCCAAACCATCAAGAATA-TGAGGTTATTA-TAAGGTCAGTAGTAACAGGCAGTTAG----AAACATAAGGGGAAA-GGGGTTGAG--AGGCA-GAGGCAGCAGCAGCATGAGGAACAG-TTACCCATGCATATTGCTGACCAAGTAATTTTTTCTGCAATTCTGTAAAACTC-AGTCTTTT------AATTAAA----------GGCCTCCCA---GTGAATGGGGCA----AGACAATGTGTGGAA--TGTATTCAG---GATTGCTACCTCTA----------GTCATACATTTT----ACCTCCT-C--------------------AA-CCCTTTAATGTCAGTTT-------A-----CAGCCTCTATATAACTGGTAGCACCATAGAT-CCCATTCTA-----AATCTGAGCAAGaaa------------------agaataaa----aaaaatga----------------------------------------------acaaag------------------cctc---------------------caaga--------aggctgggcgcagtggctcatgcctgtaatcccagaactttgggaggccgaggcgggtggatcacaaggtcaggagatcgagaccatcctggctaacacggtgaaacctcatctctactaaaaatacaaaaaaattagccggttgcggtggtgggtgcctgtagtcccagctactcgggaggctgagggaggggaatggcgtgaacccgggaggcggagtttgtagtgagccgagattgcgccactgcactccagcctgggtaatagtgcgagactccgtctcaaaaaaaaaaaaaaaaaaaaaagcctccaagaaatatgggactatgtgaaaagaccaaatctacgtctgattggtgtacctgaaagtgacagggagaatggaaccaagatggaaaacactctgcaggatattatccaggagaacttccccaacctagcaaggcaggccaacattcaaattcaggaaatacagagaacgccacaaagatactcctcgagaagagcaactccaaaacacgtaattgtcagattcaccaaagctgaaatgaaggaaaaaatgttaagggcagccagagagaaaggtcaggttacccacaaagggaagtccatcagactaacagctgatctctcggcagaaactctacaagccagaagagagtgggggccaatattcaacattcttaaagaaagaattttcaacccagaatttcatatgcagccaaactaagcttcataagtgaaggagaaataaaatcctttacagacaagcaaatgctgagagattttgtcaccaccaggcctgccctacaaaaactcctgaaggaagcactaaacatggaaaggaacaaccggtaccagccactgcaaaaacatgccaaattgttaagaccattgaggctaggaagaaactgcatcaactaacgagcaaaataattagctaacattataatgacagggtcaaattcacacataacaatattaaccttaaatgtaaatgggctaaatgctccaattaaaagacacagactggcaaattggatagagtcaagacccatcagtgtgctgtattcaggaaacccatctcatgtgcagagacacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaacaaaaaaaggcaagggttgcaatcctagtctctgataaaacagactttaaaccaacaaacatcaaaagagacaaagaaggtcattacataatggtaaagggatcaattcaacaagaagagctaactatcctaaatatatatgcacccaatacaggagcacccagattcataaagcaagtccttagagacctacaaagagacttagactcccacacaataataatgggagactttaacaccccactgtcaacattagacagatcaacgagacagaaagttaacaaggatatccaggaattgaattcagctctgcaccaagctaacttaatagacatctagagaactctccaccccaaatcaacagaatatacattcttttcagcaccacacacacctattccaaaattgaccacatacttggaagtaaagcaatcctcagcaaatataaaagaacagaaattataacaaactgtctctcagaccacagtgcaatcaaactagaactcaggattaacaaactcactcaaaaccgctcaactacatggaaactgaacaacgtgctcctgaatgactactgggtacataacgaaatgaaggcagcaatgaagatgttctttgaaaccaacgagaacaaagacacaacataccagaatctctgggacacattcaaagcagtgtgtagagggaaatttatagcactaaatgcccacaagagaaagcaggaaagatctaaaattgacatcttaacatcacaattaaaagaactagagaagcaagagcaaacacattcaaaagctagcagaaggcaagaaataactaagatcagagcagaactgaaggagatagagacacaaaaaaacccttcaaaaaatcaatgaatccaggagctgcttatttgaaaagatcaacaaaattgatagaccgcaagcaagactaatagagaagaaaagagagaagaatcaaatagatgcaataaaaactgacaaaggggatatcaccactgatcccacagaaatacaaactaccatcagagaatactataaacacctctatgcaaataaactagaaaatctagaagaaacggataaattccttgacacacacaccctcccaagactaaaccaggaagaaattgaatctctgaatagatcaataacaggctctgaaattgaggcaataattaatagcttaccaaccaaaaaaaagtccaggaccagatggattcacaggcgaattctatcagaggtacaaggaggagctggtatcattccttctgaaactattccaatcaatagaaaaagagagaatcctccctaactcattttatgaggccagcatcatcctgataccaaagcctggcagagatgcaacaaaaaaagagaattttagaccaatatccctgatgaacatcgttgcaaaaatcctcaataaaatactggcaaaatgaatccagcagcacatcaaaaagcttatccaccatgatcaagtgggtttcatccctgggatgcaaggctggttcaacatatgcaaatcaataaacataatccagcatataaacagaactaaagacaaaaaccacatgattatctcaatagatgcagaaaaggcctttgacaaaattcaacaaccttcatgctaaaaactctcaataaattaggtattgatgggatgtatctcaaaataataagagctgtctatgacaaacccacagccaatatcatactgaatgggcaaaaactgaaagcattccctttgaaaactggcacaagacagggatgccctctctcaccactcctattcaacatagtgttggaagttctggccagggcaatcaggcaggagaaggaaataaagtattcaattaggaaaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatctagaaagcctcatcatctcagcccaatatctccttaagctgatagacaacttcagcaaagtcacaggatacaaaatcaatgtgcaaaaatcacaagcattcttatacaccaat--------aacagagagccaaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacctaggaatccaacttacaaggaatgtgaaggacctcttcaaggagaactacaaaccactgctcaatgaaataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaagaagaaccaatatcatgaaaatggccatactgtccaaggtaatttatagattcaatgccatccccatcaagctaccaatgactttcttcacacaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccacattgccaagtcaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaactatactacaaggctacagtaaccaaaacaccatggtactggtaccaaaacagagatatagaccaatggaacagaacagagccctcagaaataatgctgcatatctacaaccatctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctatttaataaatggtgctgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttatacaaaaataaattcaagatggagtaaagacttaaatgttagacctaaaaccataaaaaccctagaagaaaacctaggcaataccattcaggacataggcatgggccaggacttcatgtctaaaacatcaaaagcaatggcaacaaaagacaaaattgacaaatgggatctaattaaactaaagagcttcttcacagcaaaagaaactaccatcagaatga-------acaggcaccctacagaatgggagaaagtttttgcaatctactcatctgacaaagggctaatatccagaatctacaaagaactgaaacaaatttacaagaaaaaaaacaaacaaccccatcaaaaagtgggcgaagggtatgaacagacacttctcaaaagaagatatttatgcagccaacacacacacgaaaaaatgctcatcatcactggccatcagagaaatacaaatcaaaaccacagtgagataccatctcacaccagttaggatggcgatcattaaaaagtcaggaaacaacaggtgctggagaggatgtggagaaataggaacacttttacactgttggtgggactgtaaactaattcaaccattgtggaagtcagtgtggtgattcttcagggatctagaactagaaataccatttgacccagccatcccattactgggtatatacccaaaggattataaaacatgctgctataaagacacatgcacacgtatgcttattgcggcactattcacaatagcaaagacttggaaccaacccaaatgtccaacaatgatagactggatttagaaaatgtggcacatatacaccatggaacaccatgcagccataaaaaatgatgagttcatgtcctttgtagggacatggataaagctagaaaccatcattctcagcaaactatcacaaggacaaaaaaccaaacactgcatgttctcactcataggtgggaattgaacaatgagaacacatggacacaggaaggggaacatcacacaccggggcctgttgtggggtggggggagggggaagggatagcattaggagatatacctaatgttaaatgaccagttaatgggtgcagcacaccaacatggcacatgtatacatatgtaacaaacctgcatgttgtgcacatgtaccctaaaacttaaagtataattaa s rheMac2.3 97125503 1954 - 196418989 GACTAATTACCAAATTAC--ATATAA---------AACGA-----TAACAT--AAGTTGTAGGAAAGTGGAATA---TGA---TATTTCTAGTGGAGTATTGTGCCTGGAAACA--C-------------------TACTGTATTGAAAATCCTTTGGAAACA-------AGGATTGATCATCTAAAATTTGGGAAATGCAGGATAC-AATATCCTTTTCATGGAGATTTACAATGTAC-ATTAGCATATTAA-AGGTTCTGGA--------ATGTGTT-TCTCAAAACAACT--TTGG-GAATGCTA---------------------GTTTATAGATCTTTTCTCTGCCTGT------------------------------TATTACCATCTTAC----ATAAAAATTGAATTTG--T-AAACA-----------TGAGTTTTTGTCTC---AGAATGTG-AATGAGT--AG---ACTTTCTAC-----------------TTCACTTTTC-A-----------------------TAAAGTTTTG-----------------------T-----------------------ACAAAATAAGATCAG-T---AAAAACAATCAA-----------GAAAACAAGTTGG----TAGAACAATGAAACA-GTTA------------TGTTCCTGGC--------------AGAAAAGATGAAG-AAAAGGACATGTCCT-AAATTAGGGACACA--GCAG--AGGA-GAG-TTTTGGAATG-GAAAAGCCCTCAGACAAAGGA---AA-G----------G----AAGGGAAGGTGTGAGGTTA-ACGCACAGA-ATATCTTCTCC-TTT----TTCAAA-CT--GAAGGCTGT-CCTGATTT--AATCTGGC-AAAAGAAGGCAAACCAG-CTCATCAGCAT-GCAATT-GATGATTTATCC-AGCTTGCTGTCAGAGACAGCACTGTGTAAAGA-CACAGTAGAGAATGAGGAAAAACAGGCAAACCTTAGTGAGTAAGCCAAGAAGGCAAATC-------------ACT-A-AAAAAA-ACACACA-CAGT----AA-AAAGAC-TGCACATTTGCTGGTATGATCTTGATTAAT-C-CCAAGACAGCTAAAGCTTTC-ATGTTTG-----GGGCCCCTGGGATGTGTAATG-CAAGTTT--------------------TTACTCATA-C--TAGCAGAATCCAATTCATAGTATTTATA-GTAAATGAG-----CTGGT-TTTTAAAACATCACT-TT--TAGG-TTCAGCA-GGCAT--CACTGTGTTTTC-CTTTA-GTGCATGCCATGT-TTGAG-----T----G-ATATTT-ATAATTATTT-CCTTATATATG-TTTAT---------TGCTTTGTT-GGAAGTTGAGGCCTG-TATTTGTCTGCATTATACAG----------------------CACCCCAG---GA-TTAGGGTGGA-TTTACCTCT-TA-----TTCTGTAAT-ACTGTCTTTCAAGGACCCAGTAACTCTCTATAACTAGTTCCAGCTTGTAATGTGTCTGGGA-ATTTTTTG-AC------TTTTG-------GAATCCATTGATGTCCTC-----C-------------------------------------------------------------AG-----------------------------------AAACATTC---AT----------TCTTAAATGTTGCCAAACCATCAAGAATA-TGAGGTTATTA-CAAGGTCAGTAGTAACAGGTAGTTAG----AAACATAAGGGGAAA-AGGGTTGAG--AGGCA-GAG---GCAGCAACATCAGGAACAT-TTACCCATGCATATTGCTGACTAAGCAATTTTTTCTGCAATTCTGTAAAACTCAAGTCTTTT------AATTAAA----------GGCCTCCCT---GTGAATGCGGCA----AGACAATGTGTGGAA--TGTATTCAG---GATTTCAACCCCTA----------GTCACACATTTT----ACCTCCT-C--------------------AA-CCCTTTGATGTCACTTT-------A-----CAGCCTTTAAATAACTGGTAGCACCATAGAT-CCCATTCCA-----AACCTGAGCAAGAAATTTCTAGAAAATAAACTTGGAAGAAA----AGAGTTGAGGAGGCAAACACCCAGCAAGTAAAATATATAAATATCTGGATTCATACTGAA------------------CCCCTGAATACTAAATGTGAAATTTTAAGAACTAGTATAGGTGGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGAAGAAACCCCGTCTCTACTAAAAATACCAAAA-ATTAGTCGGACATGGTGGTGGGCGCCTGTAGTCCCAGCTGCTCAGGAGGCTGAGGCAGGAGAATGGCATGAACCAGGAAGGCGGAGCTTGCAGTGAGCTGAGATCACGCCACTGCACTTCAGCCTGGGGAACAGAGCGAGACTTCATCTCCAAAAAAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=271.0 s hg18.7 26942405 117 + 158821424 aaaaaaaaaaAAGAAACT--TGGAAG-AAAAGAGTTGAGGAGGCAAACAC----------CCAGCAAGCAAAATA--TATA--AATATCTGGCTTCATACTGAACCC--------CTGAATACTA--AATGTGAAATTTTAAGA s panTro2.7 27278643 117 + 160261443 aaaaaaaaaaAAGAAACT--TGGAAG-AAAAAAGTTGAGGAGGCAAACAC----------CCAGCAAGCAAAATA--TATA--AATATCTGGCTTCATACTGAACCC--------CTGAATACTA--AATGTGAAATTTTAAGA s rheMac2.3 97127042 107 - 196418989 ------AGAAAATAAACT--TGGAAG-AAAAGAGTTGAGGAGGCAAACAC----------CCAGCAAGTAAAATA--TATA--AATATCTGGATTCATACTGAACCC--------CTGAATACTA--AATGTGAAATTTT---- a score=-287.6 s hg18.7 26942522 932 + 158821424 ACCAGTATAGGGGATATGT--ACTACATACAGCCAAATGtttttttttttttttgagatggagtc--------ttgctctgttgcccaagcgggaatgcggtggtgccatctcggctcactgca------acctccctggttcaagcaattctgctgcctaagccttccgagtaggtgggattacaggcgcctgccaccatgcccagctaatttttgtatttttagtagtgatggggtttctccatgttggccaggctggtctcaaactcctggcctcaagtgatgcgcctgcctcagcctcccaaagtgctggaattacaggcgtgcgccattgtggccagccTCAAAATCACTTTT-AGTGC-tttatggataaggaaac--aggcacagaaaagttaaattacttgacaaaga-------------------------------------------------------------------------------tcatagctagt-------------atgtaacagaatagactacaaacaggtgatcctccaaatttagtg----cttttta-ttttgactgcaacacaatgtttct--------ctTAAAAAAATGTTGATTCAATATAGGGTATATAAATATATTACACATGTAATAAGATA-TTTATAGATATGTCAG--TTAAACTTTCATA--TCTTTCTCTTTAGCAT--AAGAAAGTACCAGGTTTACTGTAAGTATAAGAAAAAC----Aggctgggcgtggtggctcacgtctgtaatcccagcattttgggaggccgaggtgggcagatcacaaggtcaagagatcgagaccatcctggccaacatggagaaaccccatctctactaaaaagacaaaaattagctgggggtggtggtgcgcacctgtagtcccagctactcgggaggccgaggcaggagaatcacttgaacccaggaggcggaggttgcagtgagccaagatcacgccact--gatcacgcctggcaacagagcgagacttcatctcaaataataatg---ataataataataataataa s panTro2.7 27278760 933 + 160261443 ACCAGTATAGGGGATATGT--ACTACATACAGCCAAAAA--AAAAtttttttttgagatggagtc--------ttgctctgttgcccaagcgggaatgcagtggtgccatctcggctcactgca------acctccctggttcaagcaattctgctgcctaagccttccgagtaggtggtattacaggcgcctgccaccatgcccagctaatttttgtatttttagtagtgatggggtttctccatgttggtcaggctggtctcaaactcctggcctcaagtgatgcacctgcctcagcctcccaaagtgctggaattacaggcgtgcgccattgtggccagccTCAAAATCACTTTT-AGTGC-tttatggataaggaaac--aggcacagaaaagttaaattacttgacaaaga-------------------------------------------------------------------------------tcatagctagt-------------atgtaacagaatagactacaaacaggtgatcctccaaatttagtg----cttttta-ttttgactgcaacacaatgtttct--------ctTAAAAAAATGTTGATTCAATATAGGGTATATAAATATATTACACATGTAATAAGATA-TTTATAGATATGTCAG--TTAAACTTTCATA--TCTTTCTCTTTAGCAT--AAGAAAGTACCAGGTTTACTGTAAGTACAAGAAAAAC----Aggctgggcgcggtggctcacgtctgtaatcccagcattttgggaggccgaggtgggcagatcacaaggtcaagagatcgagaccatcctggccaacatggagaaaccccatctctactaaaaagacaaaaattagctgggggtggtggtgtgcacctgtagtcccagctactcgggaggccgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccaagatcacgccact--gatcacgcctggcaacagagcgagacttcatctcaaataataatgataataataataataataataa s rheMac2.3 97127461 928 - 196418989 ACTAGTATATGGGATATGT--ACTATATACAATCGAAAT------CTTTTTTTTGAGATGGAGTCTGGCTCTGTGGCTCTGTTGCCCAGGCTGGAGTGCAGAGGTGCCATCTCGGCTCGCTGCAACCTCCACCTCCCTGGTTCAAGCAATTCTGCTGCCTAAGCCTTCCGAGTAGGTGGGATTACAGGCGCCTGCCACCAGGCCTGGCTAATTTTTGTATTTTTAGTAGTGATGGGGTTTCACCATGTTGTCCAGGCTGGTCTCAAACTCGTAGCCTCAAGTGATCCGCCTGCCTCAGCCTCCCAAAGTGCTGGAATTACAGGCGTGCGCCATTGTGACCAGCCTCAAAATCAATTTT-AGTGC-TTTATAGATAAGGAAAC--AAG--CAGAAAAGGTAAATTACTTGACAAAGA-------------------------------------------------------------------------------TAATAGCTAGT-------------ATGTAGCAGAATAGACTACAAAGAGCTGATCCTCCAAATTTAGTG----CTTTTTA-TTTTAACTGCAACACAATGTTTCT--------CCTAAAAAAATGTTGATTCAATATAGGGTATATAAATATATTACACATGTAATAAGATA-TTTATAGATATGTCAG--TTAAACTTCCATA--TCTTTCTCTTTAGCAT--AAGAAAGTACCAGGTTTACTGTAAGTATGAGAAAAAT----AGGCCGGGCATGGTGGCTCACGCCTGTAATCCCTGCACTTTGGGAGGCTGAGGCAGGCAGATCACGAGGTCAAGAGATCGAGACCATCCTGGCCAACATGGAGAAACCCCATCTCTACTAAAAATACAAAAATTGGCTGGGGGTGGTGGCATGCACCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCATGAGAATCACTTGAACCCAGGGGGTGGAGGTTGCAGTGAGCCGAGATCACGCCACTACACTCCAGCCTGACAACATAGCGAGACTCCATCTCAAATAATAATA---------------ATAATAA a score=2389.0 s hg18.7 26943454 4799 + 158821424 AATGGAAAAATATACATCTCAGGaaaaaatttaaataattttaaatGAGAAACCTAGGATTTATCATATGAAC-CCTAT------TTATG-----T-----------------------------TTATTCTTAGTCACATTGATTCAGTTGAAAAAAGATGCTTCATTTATGACATCTAA----AATTCC-AACCCATAATCAGAAGC---AGCAGAATGG--TC------------------------------------------------ATGGTGAAAATA--TTTGCCCTACATCTGTGTCTACTTAGGGTTG-CAC--ATCCAAATCTGCTTGGCATTATTTGTTTAAT--TTGGAGAAAGGACAC-----CTAATTTT-CTTGTTTCCTCATTGACTAAACTGCTGT--ATACAAGAGAATGGTTTCTGCATTCAGAAT----------GAGTTCCTACATGATTAAGAAACCAATTCA----AAGGAATGCTTCTTAAAC---------------------------CTGCAGCAACTTAGCAACTCA-----TTATTATTAATATTTTCATTAAACCATTCAAAGCTTTCTTG-ATATAAACACAATTTTCTTTTTCTAATCAGTCAGCATATCTGAACATT-ATAGTTTGTTTG-GTTTTTCCAGAG-TT---CTGGTTGGTTGTTTGCTCTGGGG-AATTTGGCCT-CTTTT--------ATAAAGTT--AATA--G---TTTGGA---AAAGGTACTGTAAGAAAGCTTCTAATGGTGCAATGAGTGTGTTTAACAAGCATTTCCAGGA-AAAGATTTTGGTAAGTCACTTGTATGTTTCATCC-------------ATAGAAAG--CC-AAAAATCTAAATGTCATA------AACATA-TTCCTGAACATTTGATAAATGCT------------ATAAATTGGACT-------------------------------------------------GATTGAACTATAT-AAAATATTCGTAA---CATTGTTCTACATG-TAA----ATGTATTCCAAGTTCCAGTTTAACTTGCCAGGAA-------------CAACCCCTTGGCTGAGAATC-TATCTTGTGACCC-AGTAGGGAAGCTCTCTCAGCAAGAGGGAGATATTCTTAATAGTTAGTAACCTAACTCTAAATTTGAAAATAGGAAGGAAA----------ATCTTTGGGGCACATACTCCCCTAAAATGATACATATTGTGACCAAAGAGTGATCTAGAAAGAGACT----------------------TTCCA--CTCACTCCCA--TGAAAAAGTTGTCAGAACTAGACTGTCCTTACCCTTAGGTGTGCACTGCAGCCCAGACTACTCCTCTGAGTCACATT--------CTAGCTTTCTCTTTCCTGTAACATCTTAA---CAAG-CATTAGCCTG-------TTAATCATTTTCTAGGGATAGTTCTGGGGCTGGAAGCTGCTGTAAAATAAAG------CAATTtggggaaaat-cttaaagattatctagaccagaggtacccaaactttcccaggtcatagcactataaatgtctta-----------agtaatt--ttt-catagtgcccctaggccaaa-----agaaataactaa--------------------------------------cagtctcattaattaagtagttaggtccaaat-acttagtaagtatttgggttctgataacttaggaggtggtctt-----acacacacacacacatagccacacaaacaaatt---------------------------------------------------------------------------------------------------aaaaccaaatcata-----------------------------------------------------------tttttacttaacttctaaacagcc-------------------acaattacttcctaatgagatatgtacccctcttcagcact-cacatctcaaacgctggaat----taaactgcactcc------cttctttctcgttctacactgatttctacatagtacttg-tttttatc----------------------------------atagcaatgaccaaaaatccag-ctttacaaagagatggcattg---aaagacatgtagtgtgagctaatg------ttgtgaactattgcaagctgttgttttgcctggtgtctgaaa----aacatcaagtatcattctatttcccttgaaattttaaaa--------------------------tgtcctgcaacaccct---tgtg-agttaactgtagcaccccaaggcaccttggt-cacagtttgggaattgggaatcta------atatcctatttc-atggacaagaaaagtaagaccaagaatagttaagaaaattttccaagattatccagctaattagGTTAAGTAA-----AAAACAAGAAG-TCCTGTTTAAAATACTGAGAATTT------AGCCCATGTTCTTAAATTTAACTGGATCCCACAGATC----TTGA-TTCTGCAGAGCAAACCTATGGACATGAAAC-TAACCCCACCTCCCAGGGCATTCCT-GTCTTTGCATTCACTACTAGATGGTCCTCAACACAG----TGATT--------T-TTTTTAAGGTGAAAGG--AGTTAAGAGAGCTGCATAATAGCACAGAAT--TAATTA----TAAGAACCAAG--AGTAGCACCT-GTCTTCAGACCCTTCATTATGGCttttttt-------------tctttctttctttaggtgaagtttcactcttgtcgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcgcctgccaccatgcccagctaatttttgtatttttagtagagatgagttttctccatgttagccaggctggtctcgaactcctgatctcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccatcgtgcccggccAATTAAGAGCTTTCTTTATCACAACAC-AGTTTCCTTTCCTCCCTTATCTAGAGGCCCTCTTTACG-------------------------------TCCTCTACTCATCAAACTC------TCTTCCTCTTTGCCTCTT--CTTTTTGTTCTTCAGTGCATTCTACTTCCA------GGAACCATATG----TCCTTA-TGGGATCCTATTCCTACATACCAAATCTTAGATACtgtggtagaagctac--------------tgtttacctcccagtattcattccctccttcttccttgtaaaagg----acacccag-tt--------------tttttgct----gggctaactacaataaagatcaca-tttccagactactttacaatt-agatatagccatatgatgaatttctggccagt-aggatataaaca-gaagtaatgcatgcaatttct-----gaaaa----aaaaaaaaaaaaaaaaagtgttcttaaa---aagacggg-atgtgacctt---tctcccttccttctacctgctggctgaa--at-tagaatataatgac-tggagtacaagtagccattctggaccatgaggaggaactgacagcttaaggataac--agcaacaatgtagaaggagcctagttcctgttgatcttgg-gtgtctttacaaaccctggtctactc-ccctctggaattcatttatataagaaagaaatac--atctgta-tattatttaagccattgctatttgaagatttttgtcaatgccagctaaacctactactgtactaataAATACAGACT-ATCTT-CA---TGATAA---TACAATAACACATAATGTACTTTAAAACAACTCCTATAGATTTCCACTATTATATATTTAATATATGTAAAAC--------------TTAG----------------GACACG-------TAACTCCAGATACCTATCAGAAGTATATGAAACCAAACTCAC-TACTAC-CC-CTTGAGGATTTAGT-------GAAATTTTCATAGCCTATGCCTCACATGGAAACATATTTTATAAACCAAGTGACATCTGACTAAA--ACATAT---AAAGTTAA---GTTTTCTTAAGGGGATAAATTCTCACATAAAATTGGtctagtttaaggcaaaaaattaaacactttgatttatctcca-ttatctccctcaaccccactaatgaag-------gaagagagtccttaaaacataagc--ccactgacgaac--aacaat--gagagaaggaatgaagtcacaaaattttg----------------------------------------------------------gaaactgg-aaagcagatgaataagcaataagactgcaaaaagctgaatcttaaatgggcagtgg-gaa-------tagctaagaagcaacctaatttgcttcagaaaa---------acactcctaaaaggcccagaaagtg-acatcataaagcactctggaagtgaagaggtgaacataaagctattctttcctcaatttcatgcagctagacaactgcctctccccaatttcaggagaagacaagatgtttattctctggagagggtaaaatatggggaattatgactgcaggaacccaggcacaattgagatagaagttatcatact---aaaaatagggaaattaaat-gaaagtttgcacaatgaactttaaaatccccagccctcttgttgt----------------------------attccactcttagaatgctgg-----------------------------------------------cagctggattt--------tatcataccccagaaagatatgagaatttattataaccatgaaagaagaacaggatgcttaagaaaaaaatcagagaacaaggaagaagtcttgaaaattCTCTTA---------GAATTTCCAAGAGATCTTGGA------------AAATTAATAAAGGAATTGAAGTTTCCTTGAAGAAAAGAGAAAAAGAAAATGGATTTTCAgaa--------ggatggaaggaaggaaggaaggaaggaaggaagg----aaggaaggaaggaaggaGAaggggaggggaggggaggggagActgggttcagtggctcatgcctgtaaggctgaggcgggtggatcacctgaggtcagaagtttgagaccagcctgactaacatggtgaaaccccgtctctactaaaaatac-aaaattagccaagcgtggtggtgcatgcctgtaatcccagctactcaggaggctgaggcaggagaattacttgaaccagggaggcggaggctgcagtgaaccaagatcatgccactgcactccagcctgggcaacaagagtgaaactccatctc-aaaaaaaaaaaaagggagaaagaaaaaattcaagaaaacttcttaccactgaagagcttgagtttccagaaatgaaaagacccatggagtaccaagcacaatggataaaaataaatagacctacatctctataaaagaagatcaa------tatgaaatttcagagccctaggccagaaataa--aaagggttttaacagatcttagatt-taaaa---------------aaaaatacaagattgacaatgagaatgtcatcagacttctcagtaataacattggaagctagcaggtaatggagaaatgcctt s panTro2.7 27279697 4787 + 160261443 ----GAAAAATATACATCTCAGGaaaaaatttaaataattttaaatGAGAAACCTAGGATTTATCATATGAAC-CCTAT------TTATG-----T-----------------------------TTATTCTTAGCCACATTGATTCAGTTGAAAAAAGATGCTTCATTTATGACATCTAA----AATTCC-AACCCATAATCAGAAGC---AGCAGAATGG--TC------------------------------------------------ATGGTGAAAATA--TTTGCCCTACATCTGTGTCTACTTAGGGTTG-CAC--ATCCAAATCTGCTTGGCATTATTTGTTTAAT--TTGGAGAAAGGACAC-----CTAATTTT-CTTGTTTCCTCATTGACTAAACTGCTGT--ATACAAGAGAATGGTTTCTGCATTCAGAAT----------GAGTTCCTACATGATTAAGAAACCAATTCA----AAGGAATGCTTCTTAAAC---------------------------CTGCCGCAACTTAGCAACTCA-----TTATTATTAATATTTTCATTGAACCATTCAAAGCTTTCTTG-ATATAAACACAATTTTCTTTTTCTAATCAGTCAGCCTATCTGAACATT-ATAGTTTGTTTG-GTTTTTCCAGAG-TT---CTGGTTGGTTGTTTGCTCTGGGG-AATGTGGCCT-CTTTT--------ATAAAGTT--AATA--G---TTTGGA---AAAGGTACTGTAAGAAAGCTTCTAATGGTGCAATGAGTGTGTTTAACAAGCATTTCCAGGA-AAAGATTTTGGTAAGTCACTTGTATGTTTCATCC-------------ATAGAAAG--CC-AAAAATCTAAATGTCATA------AACATA-TTCCTGAACATTTGATAAATGCT------------ATAAATTGGACT-------------------------------------------------GATTGAACTATAT-AAAATATTCGTAA---CATTGTTCTACATG-AAA----ATGTATTCCAAGTTCCAGTTTAACTCGCCAGGAA-------------CAACCCCTTGGCTGAGAATC-TATCTCGTGACCC-AGTAGGGAAGCTCTCTCAGCAAGAGGGAGATATTCTTAATAGTTAGTAACCTAACTCTAAATTTGAAAATAGGAAGGAAA----------ATCTTTGGGGCACATACTCCCCTAAGATGATACATATTGTGACCAAAGAGTGATCTAGAAAGAGACT----------------------TTCCA--TGCACTCCCA--TGAAAAAGTTGTCAGAACTAGACTGTCCTTACCCTTAGGTGTGCACTGCAGCCCAGACTACTCCTCTGAGTCACATT--------CTAGCTTTCTCTTTCCTGTAACATCTTAA---CAAG-CATTAGCCTG-------TTAATCATTTTCTAGGGATAGTTCTGGGGCTGGAAGCTGCTGTGAAATAAAG------CAATTtggggaaaat-cttaaagattatctagaccagaggtacccaaactttcccaggtcatagcactataaatgtctta-----------agtaatt--ttt-catagtgcccctaggccaaa-----agaaataactaa--------------------------------------cagtctcattaattaagtagttaggtccaaat-acttagtaagtatttgggttctgataacttaggaggtggtctt-----acacacacacacacatagccaaacaaacaaatt---------------------------------------------------------------------------------------------------aaaaccaaatcata-----------------------------------------------------------tttttacttaacttctaaacagcc-------------------acaattacttcctaatgagatacgtacccctcttcagcact-cacatctcaaacgctggaat----taaactgcactcc------cttctttctcgttctacactgatttctacatagtacttg-tttttatc----------------------------------atagcaatgaccaaaaatccag-ctttacaaagagatggcattg---aaagacatgtagtgtgagctaatg------ttgtgaactattgcaagctgttgctttgcctggtgtctgaaa----aacatcaagcatcattctatttcccttgaaattttaaaa--------------------------tgtcctgcaacaccct---tgtg-agttaactgtagcaccccaaggcaccttggt-cacagtttgggaattgggaatcta------atatcctatttc-atggacaagaaaagtaagaccaagaatagttaagaaaattttccaagattatccagctaattagGTTAAGTAA-----AAAACAAGAAG-TCCTGTTTAAAATACTGAGAATTT------AGCCCATGTTCTTAAATTTAACTGGATCCCACAGATC----TTGA-TTCTGCAGAGCAAACCTATGGACATGAAAC-TAACCCCACCTCCCAGGGCATTCCT-GTCTTTGCATTCACTACTAGATGGTCCTCAACACAG----TGATT--------T-TTTTTAAGGTGAAAGG--AGTTAAGAGAGCTGCATAATAGCACAGAAT--TAATTA----TAAGAACCAAG--AGTAGCACCT-GTCTTCAGACCCTTCATTATGGCttttttt-------------tctttctttctttaggtgaagtttcactcttgtcgcccaggctggagtgcagtggcgtgatctcggctcactgcaacctccacctcctgggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcgcctgccaccatgcccagctaatttttgtatttttaatagagatgagttttctccatgttagccaggctggtcttgaactcctgatctcaggtgatccgcccgcctcagcctcccaaagtgctgggattacaggtgtgagccatcgtgcctggccAATTAAGAGCTTTCTTTATCACAACAC-AGTTTCCTTTCCTCCCTTATCTAGAGGCCCTCTTTACG-------------------------------TCCTCTACTCATCAAACTC------TCTTCCTCTTTGCCTCTT--CTTTTTGTTCTTCAGTGCATTCTACTTCCA------GGAACCATATG----TCCTTA-TGGGATCCTATTCCTACATACCAAATCTTAGATACtgtggtagaagctac--------------tgtttacctcccagtattcattccctccttcttccttgtaaaagg----acacccag-tt--------------tttttgct----gggctaactacaataaagatcaca-tttccagactactttacaatt-agatatagccatatgatgaatttctggccagt-aggatataaaca-gaagtaatgcatgcaatttct-----g--------aaaaaaaaaaaaaaaaagtgttcttaaa---aagacggg-atgtgacctt---tctcccttccttctacctgctggctgaa--at-tagaatataatgac-tggagtacaagtagccattctggaccatgaggaggaactgacagcttaaggataac--agcaacaatgtagaaggagcctagttcctgttgatcttgg-gtgtctttacaaaccctggtctactc-ccctctggatttcatttatataagaaagaaatac--atctgta-tattatttaagccattgctatttgaagatttttgtcaatgccagctaaacctactactgtactaataAATACAGACT-ATCTT-CA---TGATAA---TATAATAACACATAATGTACTTTAGAACAACTCCTATAGATTTCCACTATTATATATTTAATATATGTAAAAC--------------TTAG----------------GACACG-------TAACTCCAGATACCTGTCAGAAGTATATGAAACCAAACTCAC-TACTAC-CC-CTTGAGGATTTAGT-------GAAATTTTCATAGCCTATGCCTCACACGGAAACATATTTTATAAACCAAGTGACATCTGACTAAA--ACATAT---AAAGTTAA---GTTTTCTTAAGGGGATAAATTCTCACATAAAATTGGtctagtttaaggcaaaaaattaaacactttgatttatctcca-ttatctccctcaaccccactaatgaag-------gaagagagtccttaaaacataagc--ccactgacgaac--aacaat--gagagaaggaatgaagtcacaaaattttg----------------------------------------------------------gaaactag-aaagcagatgaataagcaataagactgcaaaaagctgaatcttaaatgggcagtgg-gaa-------tagctaagaagcaacctaatttgcttcagaaaa---------acactcctaaaaggcccagaaagtg-acatcatacagcactctggaagtgaagaggtgaacataaagctattctttcctcaatttcatgcagctagacaactgcctctccccagtttcaggagaagacaagatgtttattctctggagagggtaaaatatggggaattatgactgcaggaacccaggcacaattgagatagaagttatcatact---aaaaatagggaaattaaat-gaaagtttgcacaatgaactttaaaatccccagccctcttgttgt----------------------------attccactcttagaatgctgg-----------------------------------------------cagctggattt--------tatcataccccagaaagatatgagaatttattataaccatgaaagaagaacaggatgcttaagaaaaaaatcagagaacaaggaagaagtcttgaaaattCTCTTA---------GAATTTCCAAGAGATCTTGGA------------AAATTAATAAAGGAATTGAAGTTTCCTTGAAGAAAAGAGAAAAAGAAAATGGATTTTCAgaa--------ggatggaaggaaggaaggaaggaaggaaggaagg----aaggaaggaaggaaggaGA-----AGGGGAGGGGAGGGGAgactgggttcagtggctcatgcctgtaaggctgaggcgggtggatcacctgaggtcagaagtttgagaccagcctgactaacatggtgaaaccccgtctctactaaaaatac-aaaattagccaagcgtggtggtacatgcctgtaatcccagctactcaggaggctgaggcaggagaattacttgaaccagggaggcggaggctgcagtgaaccaagatcatgccactgcactccagcctgggcaacaagagtgaaactccatctcaaaaaaaaaaaaaaggaagaaagaaaaaattcaagaaaacttcttaccactgaagagcttgagtttccagaaatgaaaagacccatggagtaccaagcacaatggataaaaataaatagacctacatctctataaaagaagatcat------tatgaaatttcagagccctaggccagaaataa--aaagggttttaacagatcttagatt-taaaa---------------aaaaatacaagattgacaatgagaatgtcatcagacttctcagtaataacattggaagctagcaggtaatggagaaatgcctt s rheMac2.3 97128393 4822 - 196418989 ----GAAAAATAGACATCTCAGGAAAAAATTTAAATAATTTTAAATGA---------GATTCATCATATGAAC-CCTAT------TTATG-----T-----------------------------TTATTCTTAGCCACATTGATTCAGTTGAAAAAAGATGCTTCATTTATGACATCTAA----AATTCC-AACCCATAATCAGAAAC---AGCAGAATGG--TC------------------------------------------------ATGGTGAAAATA--TTTGCCCTACATCTGTGTCTGCTTAGGGTTG-CAC--ATCCAAATCTGCTTGGCGTTATTTGTTTAAT--TTGGAGAAAGGACAC-----CTAATTTT-CTTGTTTCCTCACTGACTAAACTGCTGT--ATACAAGAGAATGGTTTCTGCATTCAGAAT----------GAGTTCCTACATGATTAAAAAACCAATTCA----AAGGAATGCTTCTTAAAC---------------------------CTGCAGCAACTTAGCAACTCA-----TTATTATTAATATTTTCATTAAACCATTCAAAGCTTTCTTG-ATATAAACACAATTTTCTTTTTCTAATCAGTCAGCATATCTGAACATT-AAAGTTTGTTTG-GTTTTTCCAGAG-TT---CTGGTTGGTTGTTTGCTCTGGGG-AATTTGGCCT-CTTTC--------ATAAAGTT--AATA--G---TTTGGA---AAAGGTACTGTAAGAAAGCTTCTAATGGTGCAATCAGTTTGTTTAATAAGCATTTCCAGGG-AAAGATTTTGGTAAGTCACTTGGATGTTTCATCC-------------ACAGAAAG--CC-AAAAATCTAAATGTCATA------AACATA-TTCCTGAACATTTGATAAATGCT------------ATAAATTGGACT-------------------------------------------------GATTGAACTATAT-AAAATATTCGTAA---CATTGTTCTACATG-AAA----ATGTATTCCAAGTTCCAGTTTAACTTGCCAGGAA-------------CAACCCCTTGGCTGAGAATC-TATCTCGTGACCC-AGTAGGTAAGCTATCTCAGCAAGAGGGAGGTATTCTTAA----TAGTAACCTAACTCTAAATTTAAAAATAGGAAGGAAA----------TTCTTTGGGGCACATACTCCCCTAAGATGATCCAAATTGTGATCAAAGAGTGGTCTAGAAAGAGACT----------------------TTCCA--CACACTTCCA--TGAAAAAGTTGTCAGAACTAGACTGTCCTTACGCTTAGGTGTGCACTGCAGCCCAGACTACTTCTCTGAGTCACATT--------CTAGCTTTCTCTTTCCTGTAACATCC-------------TTAGCCTG-------TTAATCATTTTCTAGGGATAGTTCTGGGGCTGGAAGCTGCTATAAAATAAGG------CAATTTGGGAAAAAT-CTTAAAGATTATCTAGACCAGAGGTGCCCAAACTTTCCCAGGTCATACCACTATAAATGTCTTA-----------GTAATTT--TTT-CATAGTGTCCCTAGGCCAAA-----AGAAA----TAA--------------------------------------CAGTCTCATTAATTAAGTAGTTAGGTCCAAAC-ACTTAGTAAGTATTTGGGTTCTAATAACTTAGGGGGTGGTCTT-ACACACACACACACACACATACCCACACAAACAAATT---------------------------------------------------------------------------------------------------AAAAGCAAATCATG-----------------------------------------------------------TTTTTACTTAACTTCTAAACAGCC-------------------ACAATTACTTCCTAATGAGATATGTACTCCTGTTCAGCACT-CACATTTCAAACCGTGGAAT----TAAATTGCACTCC------CTTCTTTCTTGTTCCACACTGATTTCTAACTAGTACTTGTTTTTTATC----------------------------------ACAGCAATAGCCAAAAATCCAG-CTTTACAAAGCGATGGCATCG---AAAGACATGCAGTGTGAGCTTATG------TTGTGAACTATTGCAAGCTGTTGTTTTGCCTGGTGTCTGAAA----AACTTCAAGTATCATTCTATTTCCCTTGAAATTTTAAAA--------------------------TGTCCTGCAACACCCT---TGTG-AGTTAACTGTAGCACCCCAAGGCACCTTGGT-CACAGTTTGGGCATTGGGAGTCTA------ATATCTTATTTC-ATGGATAAGCAAAGTAAGACCAAGAGTAGTTAAGAAAACTTTCCAAGATTATCCAGCTAATTATGTTAAGTAA-----AAAACAAGAAG-TTGTGTTTAAAATACTGAGAATTT------AGCTCATGTTCTTAAATTTAACTGGATCCCACAGATC----TTGA-TTCTGCAGAGCAAACCTATGGACATGAAAC-TAACCCCACCTCCCAGGGCATTCCT-GTCTTTGCATTCACTACTAGATGCTCCTCAACACAG----TGATT--------T-TTTTTAAGGTGAAAGG--AGTTAAGACAGCTGCATAATTGCACAGAATTATAATTA----TAAGAACCAAG--AGTAGCACCT-GTCTTCAGACCCTTCATTACGGCTTTTTTT-----TTTCTCTCTCTCTCTCTCTTTAGGCAGAGTTTCGCTCTTGTCGCCCAGGCTGGAGTGCAGTGGTGTGATCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTATAGGTGCCTGCCACCATGCCCAGCTAAGTTTTGTATTTTTAGTAGAGACGAGTTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTCCTGATCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACAGCGCCTGGCCAATTCAGGGCTTTCTTTATCCCAACACAAGTTTCCTTTCCTCCCTTATCGTGAGGCCCTTTTTACTTAACATAATTGGCTGGATAATTCATGTGCTCTACTCTACTCATAAAACTCTAC-TTTCTTCCTCTTTGCCTCTT--CTTTTTGTTCTGCAGTGCATTCTACTTCCA------GGAACCATATG----TCCTTA-TGGGATCCTATTCCTACATACCAAATCTTAGATACTATGGTAAAAGTTAC--------------TGTTTACCTCCCAGCATTCACTCCCTCCTTCTTCCTTATAAAATG----ACACCCAGTTT--------------TTTTTGTT----GGGCTAACTACAATAAAGACCACA-TTTCCAGACTACTTTACAATT-AGGTATAGCCATATGATGGATTTCTGGCCAGT-GGGATATAAGCA-GAAGTAATGCATGCAATTTCT-----A------------AAAAAAAAAAAAAGTGTTCTTAAA---AAGAAGGG-ATGTGACCTT---TCTCCCTTCCTTCTACCTGCTGGCTGAA--AT-TAGAATATAATGAC-TGGAGTTCAAGTAGCCATTTTGGACCATGAGGAGGAACTCACAGCTTAAGGACAGCAGAGCAACAATATAGAAGGAGCTTAGTTCCTGTTGATCTTGG-GTCTCTTTACAAACCCTGGTCTGATC-CCCTCTGGATTTCATTTATATAAGAAAGAAATAC--ATCTGTA-TATTATTTAAGCCACTGCTATTTGAAGATTTTTGTCAATGTCAGCTAAACCTACTACTGTACT----AATACAAACT-ATCTTACA---TGATAA---TATAACAACACATAATGTACTTTAGAACAGCTCCTATAGATTTCCACTATTATATATTTAATATATGTAAAAC--------------TTAG----------------GACACA-------TAACTCCAGGCACCTGTCAGAAGTATATGAAACCAAACTCAC-TACTAC-CC-CTTGAGGATTTAAT-------GAAATTTTCATA-CCTATGCCTCCCAAGGAAACGTATTTTATAAACCAAGTGACATCTGACTAAA--ATATAT---AAAGTTAA---GTTTTCTTAAGGGGGTAAATTCTCATATAAAATTGATCTAGTTTAGGGCAACAAATTAAACACTTTGGCGTATCTCCA-TTATCTCCCTCAACCCCACTAACGATG-------GAAGAGAACCCTTAAAACATAAGC--CCATCAAGGAAT--AAAAAT--GAGAGAAGGAATGAAGTCACAAAATTTTG----------------------------------------------------------GAAACTGG-AAAGCAGATGAACAAGCAGTAAGACTGCAAAAAGCTGAATCTTAAATGGGCAGTGG-GAA-------TAGCTAAGAAGCAACCTAATCTGCTTCAGAAAA---------ACACTCCTAAAAGACCCAGAAATTG-ACATCATAAAGCACTCTGGAAGTGAAGAGGTGAACATAAAGCTATTCTTTCCTCAATTTCATGCAGCTAGACAACTGCCTCTGCTTAGTTTCAGGAGAAGATAAGATGTTTATTCTCTGGAGAGGGTAAAATATGGGGAATTATGACTGCAGGAATCCAGGCACAATTGAGATAGAAGTTATCATACT---AAGAATAGGAAAATTAAAT-GAAAGTTTGCATAATGAACTTTAAAACCCCCAGCCCTCTTGTTGT----------------------------ATTCCACTCTTAGAATGCTGG-----------------------------------------------CAGCTGGATTT--------TATTATACCTCAGAGAGATATGAGAATTTATTATAACCATGAAAGAAGAACAGGATGCTTAAGAAAAAAATCAGAGAACAAGAAAAAAGTCTTGAAAATTCTCTTG---------GAATTTCCGAGAGATCTTGGA------------AAATTTATAAAGGAATTGAAGTTTCCTCGAAGAAAAGAGAAAAAGAAAATGGGTTTTCAGAACGATGGATGGATGGAAGGATGGAAGGAAGGAAGGAAGGAAGGATACAAGGAAGAAAGGAAGGAAGAGG--AAGGGAGGGGAGGGGAGACCGGGTTCGGTGGCTCGTGCCTGTAAGGCCGAGGCCAGTGGATCACCTGAGGTCAGAAGTTCGAGACCAGCCTGACTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAAGCGTGGTGGTGCATGCCTGTAATCCCAGCTACCTGGTAGGCTGAGGCAGGAGAATTGCTTGAATCTGGGAGGCAGAGGTTGCAGTGAACCAAGATCACGCCACTGCACTTCAGCCTGGGCAACAAGAGCTAAACTCCATCTC----AAAAAAAAAAGGAAGAAAG-AAAAATTCAAGAAAACTTCTTACCACTGAAGAGCTTGAGTTTCCAGAAATGAAAAGACCCATGGAATACCAAGCACAATGGATAAAAATACATAGACCTACATCTCTATAAAAGAAGATTAT------TATGAAATTTCAGAGCCCTAGGCCAAAAAAAAAGAAAAAATTTTAACAGATCTTAGATTAAAAAA---------------AAAAATACAAGACTGACAATGAGAATGTCATCAGACTTCTCAGTAATAACATTGGAAGCTAGCAGGCAATGGAGAAATGCCTT # synteny group 0 a score=-762.0 s hg18.7 26948253 808 + 158821424 aaaaa-taataaattttatta-attaaatgtgaagatagaataatggatttcagtcatttaagatct-caaaa--atttctaggaagctgttagaagatatgatcaatcaaaataagaatgtgaagtagg---aaaaaaaaagacataatatccagaaaaccaggggatccaacacaaaag--agacaaagtgaattccTTGAAGcaggggtcagcaaactatatagcctgtgggcctaattcagcatgacacctgtttttatatggcccaagaattaagaatggttcttacacttttaagtga---tttctaaaa--------------a-taaaaataagaatattccataacacctaaaaactatatgaaattaaaatttcagtgttcat----aaagttctactggatcacagccacacttattgatttatgtatcatctatggctgcttttgtgctgtaacagcaaagttaagcagatgcacctaaggctatatggtctaaaaagcctaCT----------------------TTACAGAAAGTTGCCTTAccctagaggatggtaaaggaggaagatcccagaataacagct---atgcagcaagcctaaagaacaactggcccaaactagaacaaatc---agaaagccataggagaga-gatccc--aaaaaata------aaactgatggaat-ttctgaaatgtttcaatgtactaaaagaagatttgaataacttgggaaggatttgtaaat-aaactggttatcagtgcatagaaaat----taaattt----aaaacaagagcattatt---------aaattattttta--aaaagtgatacaggaagaaaaattatt-gtag-------tatactacatggttc--agctgtg s panTro2.7 27284831 806 + 160261443 aaaaa-ttataaattttatta-attaaatgtgaagatagaataatggatttcagtcatttaagatct-caaaa--atttctaggaagctgttagaagatatgatcaatcaaaataagaatgtgaagtagg---aaaaaaaa-gacataatatccagaaaaccaggggctccaacacaaaag--agacaaagtgaattccTTGAAGcaggggtcagcaaactatatagcctgtgggcctaattcagcatgatacctgtttttatatggcccaagaattaagaatggttcttacacttttaagtga---tttctaaaa--------------a-taaaaataagaatattccatgacacctaaaaactatatgaaattaaaatttcagtgttcat----aaagttctactggatcacagccacacttattgatttatgtatcatctatagctgcttttgggctgtaacagcaaagttaagcagatgcacctaaggctatatggtctacaaagcctaCT----------------------TTACAGAAAGTTGCCTTAccctagaggatggtaaaggaggaagatcccagaataacagct---atgcagcaagcctaaagaacaactggcccaaactagaacaaatc---agaaagccataggagaga-gatccc--aaaaaata------aaactgatggaat-ttctgaaatgtttcaatgtactaaaagaagatttgaataacttgggaaggatttgtaaat-aaactggttatcagtgcatagaaaat----taaattt----aaaacaagagcattatt---------aaattattttta--aaa-gtgatacaggaagaaaaattatt-gtag-------tatactacatggttc--agctgtg s rheMac2.3 97133215 783 - 196418989 CAAAA-TTATAAATGTTATTA-ATTAAATGTGAAGATAGAATAATGGATTTCAATCATTTAAGATCT-CAAAA--ATTTCTAGGAAGCTGTTAGAAGATATGAACAATCAAAATAAGAATGTGAAGTAGG---AAAAAGAAAGACATAATATCCAGAAAACCAGGGGATCCAACACAAAAG--AGGCAAAGTGAATTCCTTGAAGCAGGGGTCAGCAAACTATATAGCCCGTGGGCCCAATTCAGCATGACACCTGCTTTTATATGGCCCAAGAACTAAGAATGGTTCTTACATTTTTAAGTGA---TTTCTAAGAATAAAAATATTCTTA-TAAAAATAAGAATATTCCATGACACCTAAAAACTATATGAAATTAAAATTTCAGTGTTCAT----AAAGTTCTACTGGATCACAGCCACACTTACTGATTCATGTATCATCTATGGCTACTTTTATGCTGTAACAGCTAAGTTAAGCAGATGCACCTAAGGCTATATGGTCTAAAAAACCTACT----------------------TTACAGAAATTTGCCTTACCCTAGAGGATGGTAA---AGGAAGATACCAGAATAACAGCT---ATGCAGCAAGCCTAAAGAACAACTGGCCCAAACTAGAACAAATC---AGAAAGCCATAGAAGAGA-GATCCC--AAAAAATA------AAATTGATGGAAT-CTCTGAAATGTTTCAATGTCCTAAAAGAAGATTTGAATAACTTGGGAAGGATTTGTAAAT-AAACTGGTTATCAGTACACAGAAAAT----TAAATTA----AAAACAAGAGCATTATT---------AAATTATTTTTA--AAAAGTGATACAGAAGG---------------------------------------------- a score=265.4 s hg18.7 26949061 673 + 158821424 aatagaatttatgtagtcata---------------atg---taagtactaaatattaaacaaaacaaaatt-----------------------------------------------ataataaagta------att-----------------------------atgtaaggaaaatgggg-aact----agaaatgtaccaggcagtattgagaatactggtggcaacaagattaaaagacagataaattctt-----acttttg--ca-----------gtcaagagatg-catcta---aaaacaaaaagtcaagaagcagc---agcttaagatttagtggtatttagccaaatatcaagagaaacagct-taaacagttaaaagtgctttcttt-agtgattgggaaatggggtaagggtagaagaaagggagaaacaggacag-acctgctatttatcaaagtaaggcttgtag--------acaatttaattttttaaactatgtgtatatgtaactttgaag-caaataaaaA-CTAAATTTGATATTA-GCCCCC---CAAATGAAGAATTCTCATATAGATTTCTGATTGTTTGGCATGCT------TTACAGGGT-AAGT----TTTTCAAGTAATGTTT-----ATAAAC---------------------ACACTTGATTTGAGAATTT--TGAACT--GTTTACGAAATAA-AGGTCTTATTTTACATACC-AACATGCAATTAGTAAGT-----------------------AAAAGTGAAGGGATTTTTTAAAACA----TTATTTTTTAAGTACATAAA-ATTCCTTTATTTTGTTCTACTCTGTTTAG---ATCATTACTACAGAAAAT-AAC s panTro2.7 27285637 673 + 160261443 aatagaatttatgtagtcata---------------atg---taagtactaaatattaaacaaaacaaaatt-----------------------------------------------ataataaagta------att-----------------------------atgtaaggaaaatgggg-aact----agaaatgtaccaggcagtattgagaatactggtggcaacaagattaaaagacagataaattctt-----acttttg--ca-----------gtcaagagatg-cgtcta---aaaacaaaaagtcaagaagcagc---agcttaagatttagtagtatttagccaaatatcaagagaaacagct-taaacagttaaaagtgctttcttt-agtgattgggaaatggggtaagggtagaagaaagggagaaacaggacag-acctgctatttatcaaagtaaggcttgtag--------acaatttaattttttaaactatgtgtatatgtaacttcgaag-caaataaaaA-CTAAATTTGATATTA-GCCCCC---CAAATGAAGAATTCTCATATAGATTTCTGATTGTTTGGCATGCT------TTACAGGGT-AAGT----TTTTCAAGTAATGTTT-----ATAAAC---------------------ACACTTGATTTGAGAATTT--TGAACT--GTTTACGAAATAA-AGGTCTTATTTTACATACC-AACATGCAGTTAGTAAGT-----------------------AAAAGTGAAGGGATTTTTTAAAACA----TTATTTTTTAAGTACATAAA-ATTCCTTTATTTTGTTCTACTCTGTTTAG---ATCATTACTACAGAAAAT-AAC s rheMac2.3 97134292 772 - 196418989 AAAAAAATATATATATATATATATATATATATATATATA---TATATAAAAAGTGATACAGAAAGAAAAATTATTGCAGTATACTACATGGTTCAGCTGTGAATAGAATTTATGTAGTCATAATAATGTACTAAATATTAACCAAAACAAAATTAAAATAAAGTAATGATATAAGGAAAATGGGG-AACT----AGAAAGGTACCAGGCAGTATTGAGAATACTGGTGGCAACAAGATTAAAAGACAGATAAATTCTT-----AGTTTTGCACA-----------GTCAAGAGATA-TGTCTA---AAAACAAAAAGTCAAGAAGAAGC---AGCTTAAGATTTAGTGGTATTTAGCCAAATATCAAGAGAAACAGCT-TAAACAGTTAAAAGTGCTTTCTTT-AGTGACTGGGAAATGGGATAAGGGTAGAAGAAAGGGATAAACAGGACAG-ACCTGCTATTTATTAAAGTAAGGCTTGTAG--------ACAATTTAATTTTTTAAACTATGTGTATATGTAACTTTGAAG-CAAATAAAAA-CTAAATTTGATATTA-GCCCCC---CAAATGAAGAATTCTCATATAGATTTCTGATTGTTTGGCATGCT------TTACCAGGT-AAGT----TTTTCAAGTAATGTTT-----ATAAAC---------------------ACACCTGATTTGAGAATTT--TGAACT--GTTTAAGAAATAA-AGGTCTTATTTTATATACC-AACATGCAGTTAGTAAGC-----------------------AAAAGTGAAGGGATTTTTAAAAACA----TTATTTTTTAAGTACTTAAA-ATTCCTTTATTTTGTTCTACTCTGTTTAG---ATCATGACTACAGAAAAT-AAC a score=264.2 s hg18.7 26949734 101 + 158821424 ATCT-AAATACTAACCACTTCAACTTCACTAGATC----AGC-----------T-AAAACAAC-T-------AAAAGATTTAATGGAAGGG-TGTTTATATTATGGAAGACAATTAGG---TAAGACAGT s panTro2.7 27286310 100 + 160261443 ATC--AAATACTAACCACTTCAACTTCACTAGATC----AGC-----------T-AAAACAAC-T-------AAAAGATTTAATGGAAGGG-TGTTTATATTATGGAAGAGAATTAGG---TAAGACAGT s rheMac2.3 97135066 102 - 196418989 ATCT-AAATACTAGCCACTTCAACTTCACTAGATG----AGC-----------T-AAAACAACTT-------AAAAGATTTAATGGAAGGG-TGTTTATATTATGGAAGACAATTAGG---TAAGACAGT a score=69.0 s hg18.7 26949835 23 + 158821424 T-AATGTAAGAATAAGCTATCTTG s panTro2.7 27286410 23 + 160261443 T-AATGTAAGAATAAGCTATCTTG s rheMac2.3 97135491 23 - 196418989 T-AATGTAAGAATAAGCTATCTTG a score=951.2 s hg18.7 26949858 642 + 158821424 TTAAGTAGGTCATCCAAAGAA-------------------------------AGG-CATGT-AC--------------------TAAGTACTTCTATGTTTTAGCTAAAA-A---AT----------------ATAAATA--------AATATGAAATG-----------AACATATTAATATTACAG---------------TTACAAATAAATA--A-C--AATAAAAACATTGTT-TTAATTGGACATCCAGTACATCCCCAAATTTGTT-TTTCA-GT----ATTATCTTTCAAAGTCACTCAACCATAGCAC-----------------ACAT-TTTGT---AAATGTCCTATATTTTACATGAATTGTATACAGGGCTTTT-----ATTTAAT----TTTTCACATTTATTTTACACTGATATTTGACAACC-AATTTTAAATTGGCATAATTA-----------G------------------CA---------ATT------------------AC---------CTTAGTATTC-CT-GTTTTTCAGTCTGAATACT----CTT--------C-ATTC--------------------------------A---------------AATGATGATT--AG----TTTG----TTTGTAGTAAT------TAGCA--------TTTTAGCCAGGGAAATGG-TTTACAAACTATGTTGCTTT-ACATCCATTTTGCTAAA------------GAGAAAAGAAAA-G-TG-----C---------------TAT---TTACTTTAATACTAACTGT----ATTTTTTAAATTGTGCCTTA-AATTCATTTAT--GAAATAAATTTGAAAAA--------------------------TCAGAAGGGCTTGGTG--------TATTT-ACCTACATCACTAATTAGACTATAATA--GC-TTCTTCTAA-GA---AGAC---TGCAGGTA-CTCTCCCTGCTC--------------------TTAATGGAATGTAGCAACTGTTTCTC s panTro2.7 27286550 634 + 160261443 --------GTCATCCAAAGAA-------------------------------AGG-CATGT-AC--------------------TAAGTACTTCTATGTTTTAGCTAAAA-A---AT----------------ATAAATA--------AATATGAAATG-----------AACATATTAATATTACAG---------------TTACAAATAAATA--A-C--AATAAAAACATTGTT-TTAATTGGACATCCAGTACATCCCCAAATTTGTT-TTTCA-GT----ATTATCTTTCAGAGTCACTCAACCATAGCAC-----------------ACAT-TTTGT---AAATGTCCTATATTTTACATGAATTGTATACAGGGCTTTT-----ATTTAAT----TTTTCACATTTATTTTACACTGATATTTGACAACC-AATTTTAAATTGGCATAATTA-----------G------------------CA---------ATT------------------AC---------CTTAGTATTC-CT-GTTTTTCAGTCTGAATACT----CTT--------C-ATCC--------------------------------A---------------AATGATGATT--AG----TTTG----TTTGTAGTAAT------TAGCA--------TTTTAGCCAGGGAAATGG-TTTACAAACTATGTTGCTTT-ACATCCATTTTGCTAAA------------GAGAAAAGAAAA-G-TG-----C---------------TAT---TTACTTTAATACTAACTGT----ATTTTTTAAATTGTGCCTTA-AATTCATTTAT--GAAATAAATTTGAAAAA--------------------------TCAGAAGGGCTTGGTG--------TATTT-ACCTACATCACTAATTAGACTATAATA--GC-TTCTTCTAA-GA---AGAC---TGCAGGTA-CTCTCGCTGCTC--------------------TTAATGGAATGTAGCAACTGTTTCTC s rheMac2.3 97135514 426 - 196418989 TTAAGTAGGTCATCCAAAGAT-------------------------------AAG-CATGT-AC--------------------TAAGTACTTCTATGTT----------------------------------TAAACA--------AATATGAAATG-----------AACACATTAATATTACAG---------------TTAC----AAATA--A-C--AATAAAAATATTATT-TTAATTGGATATCCAGTACATCCCCAAATTTGTT-TTTCA-GT----ATTATCTTTCAAATTCACTCAACCATGGCAC-----------------ACAT-TTTGT---AAATGTCCTATATTTTACATGAATTGTATACAGGGCTTTT-----ATTTAATTTACTTTTCACATTTATTTTACACTGACATTTGACAACC-AATTTTAAATTGGCATAATTA-----------G------------------CA---------ATT------------------AC---------CTTAGTATCC-CT-GTTTTTCAGTTTTAATACT----CTT--------C-ATCC--------------------------------A---------------AATGATGGTA--AG----TTTG----TTTGTAGTAAT------CAGCT--------TGTCAGCCAGGGAAATGG-TTTCTAAACTATGCTCCTTT-ACATCCATTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ a score=2674.8 s hg18.7 26950500 1953 + 158821424 AAATCACCCTCATGACAGCATTATG----------CAATTTTATCTGTCTATATTCTATTTCTA-CTTTATAT-TG-TGGATACA-TTGGAGC-------------CATATAGGAGTG----T--TTTCTATCATTGCAAAAGCCAGATAAA---ATAG-TT---TAAC---TACTACATCAAG-TGGGAAATT------ATATATATAAAT--------------------TGTCTGCTGCTGTCTATAGATTATGTCTGTAAAAGTTAAAAGCA-TTTTTCCCC-TTTTAG------------AGAGAACACTCCCAA--TGCCTTCCT---TTGCCTCATAT-----ATAAA-TT-ATCTTTTAAGGGACCAGGTGCAATAGGCAAAGA-GTTGGCTGTCTTCCCAACCCAGCTTTGCAT---------------------ACTCGTAGAGCTAGGGGTCACAGAAATGCAGAATTT--AGAGTACAAAG---CCAAGTCAAGAATTAT---------------------TTTCCTGCAT-CTTTTC-CCTTAGGGGAGA----GAAA----GGGT--GG-----TGGAATGGCAATTTGGGAGAAGTCA-TCTGAATTGAGATGAATTTAATTG-----------C-TTTTCCTGTTA-ATCT--CCCTGCCTACACAGGTGGCTATGAGAGTCCTC-----TCTCCACAGATCCATGTCA--GTGTCAACATTAAGAGGAACCGAGAATTTGGAAATCTGG--------TCCAGGCAGTTCTCCAGCTTTGTTCCAGATGC-------------AGGATGAACACA--ATTCT-ATTGGAAGCATTTGTGTGCGTGACATGATTAGACAATTAATATCCA--GCAGAACACCAG---------ACCCTACTCCTCCCAAACAAGTTTGGAGTTAATCCTAGAAAG--CG--TAGGTC-------CTCA-GTGGCATG-GGACT--T-TTTG-TAGAGTTGTTTGATACTCCAT-AGtatttatttatttatttatttatttatttatttatttatttatttatttatATGATTTTGAACTCT--GTGAGACCTG-CTCCAGAGTACTCTTGGGAGGACAAGAAATTTCTAAC---TAACTAGG-----AAATGACTAGCAGG-GAGGCTGCCTTGGGATATTGTTCAGACAGAGAAAGTAAAATTACCC-TTCACCTTGGTTTCTGCATTTGCTACCATTATCCCTCG-ATATTCCTATG-C------CCAGTATGCTAT----GGTCAAATG---AGAAGATT-CTTTTTACATTTTGCTCTATTTAAGAAAG----GCAGTGCAATCCCATGCA-TTTCTAAT-----GGACTAAGA--TCAAGTCTAACTTCTGAAGTGATTT-TCAGGA-AATGTCTTAGAACAT-------AATTATCTTTTAGACACCA-GTCAAGTTGGAAGCTGAGGAGACACAcagag--actctgcattttctgttccttgacctagaatgctct------------tcatatagccagcttctcatacttcaggtcttggtctaaatgtcactttctcaag----------------------------------------------------------------------------------------------------g--agatct---------ttcattacc----------------accctttct----------------------------aga-----ttccctaaacc------tccatcccc----------------agcactttatttctctccttcatgaaattattaca-----caattattttaattgtgcacttc-------c----tttct-----tctctctctgccccacaagaa----------tgga-------agcttcct-----------------------------gTACT-TCGAACAC----AGTATACCTATA--GT--------GTATATACAGTATAACCAAGAAAGATTTATCAATG-AAAGAGTACTGAAGGTAACTGAGGA-ACTTTACTGAA-------ACATTT---AAAACATTTTATTTTTGATAAGtatatcagtcagct-tctactatattattcagcaataataac-----tcca---aaaatctcaatacttaaaaa----ag-attgtttcttgctcactttttttttttttt-------aatgagacggagtttcgctcttgttgcccaggctggagtgcaaaggtgtgatcgtggctcactgcaacctccacctcctggg-----ttcaggtgattctcctgcttcagtctcccaagtagctgggattacaggcatctgacaccacgcccagctaattttttgcatttttagtaaagccaagttttcatcatgttggccaggatggtctcaaactactgacctcaggtgatccacccacctcagcctcccgaagtgctgggattacaggcgtgagccaccatgcccggccctc s panTro2.7 27287184 1913 + 160261443 AAATCACCCTCATGAGAGCATTACG----------CAATTTTATCTGTCTATATTCTATTTCTA-CTTTATAT-TG-TGGTTACA-TTGGAGC-------------CATATAGGAGTG----T--TTTCTATCATTGCAAAAGCCAGATAAA---ATAG-TT---TAAC---TACTACATCAAG-TGGGAAATT------ATATATATAAAT--------------------TGTCTGCTGCTGTCTATAGATTATGTCTGTAAAAGTTAAAAGCA-TTTTTCCCC-TTTTAG------------AGAGAACACTCCCAA--TGCCTTCCT---TTGCCTCATAT-----ATAAA-TT-ATCTTTTAAGGGACCAGGTGCAATAGGCAAAGA-GTTGGCTGTCTTCCCAACCCAGCTTTGCAT---------------------ACTCGTAGAGCTAGGGGTCACAGAAATGCAGAATTT--AGAGTATAAAG---CCAAGTCAAGGATTAT---------------------TTTCCTGCAT-CTTTTG-CCTTAGGGGAGA----GAAA----GGGT--GG-----TGGAATGGCAATTTGGGAGAAGTCA-TCTGAATTGAGATGAATTTAATTG-----------C-TTTTCCTGTTA-ATCT--CCCTGCCTACACAGGTGGCTATGAGAGTCCTC-----TCTCCACAGATCCATGTCA--GTGTCAACATTAAGAGGAACCGAGAATTTGGAAATCTGG--------TCCAGGCAGTTCTCCAGCTTTGTTCCAGATGC-------------AGGATGAACACA--ATTCT-ATTGGAAGCATTTGTGTGCGTGACATGATTAGACAATTAATATCCA--GCAGAACACCAG---------ACCCTACTCCTCCCAAACAAGTTTGGAGTTAATCCTAGAAAG--CG--TAGGTC-------CTCA-GTGGCATG-GGACT--T-TTTG-TAGAGTTGTTTGATACTCCAT-AGTATTTATTTATTTAT------------------------------------ATGATTTTGAACTCT--GTGAGACCTG-CTCCAGAGTACTCTTGGGAGGACAAGAAATTTCTAAC---TAACTAGG-----AAATGACTAGCAGG-GAGGCTGCCTTGGGATATTGTTCAGACAGAGAAAGTAAAATTACCC-TTCACCTTGGTTTCTGCATTTCCTACCATTATCCCTCG-ATATTCCTATG-C------CCAGTATGCTAT----GGTCAAATG---AGAAGATT-CTTTTTACATTTTGCTCTATTTAAGAAAG----GCAGTGCAATCCCATGCA-TTTCTAAT-----GGACTAAGA--TCAAGTCTAACTTCTGAAGTGATTT-TCAGGA-AATGTCTTAGAACAT-------AATTATCTTTTAGACACCA-GTCAAGTTGGAAGCTGAGGAGACACAcagag--actctgcattttctgttccttgacctagaatgctct------------tcatatagccagcttctcatacttcaggtcttggtctaaatgtcactttctcaag----------------------------------------------------------------------------------------------------g--agatct---------ttcattacc----------------accctttct----------------------------aga-----ttccctaaacc------tccatcccc----------------agcactttatttctctccttcatgaaattattaca-----caattattttaattgtgcacttc-------c----tttct-----tctctctctgccccacaagaa----------tgga-------agcttcct-----------------------------gTACT-TCGAACAC----AGTATACCTATA--GT--------GTATATACAGTATACCCAAAAAAGATTTATCAATG-AAAGAGTACTGAAGGTAACTGAGGA-ACTTTACTGAA-------ACATCT---AAAACATTTTATTTTTGATAAGtatatcagtcagct-tctactatattattcagcaataataac-----tcca---aaaatctcaatacttaaaaa----ag-attgtttcttgctcacttttttttttttt--------aatgagacggagtttcgctcttgttgcccaggctggagtgcaaaggtgtgatcgtggctcactgcaacctccacctcctggg-----ttcaggtgattctcctgcttcagtctcccaagtagctgggattacaggcgtctgacaccacgcccagctaattttttgcattttcagtaaagccgggttttcatcatgttggccaggatggtctcaaactactgacctcaggtgatccacccgcctcagcctcccgaagtgctgggattacaggcgtgagccaccatgcccggcc--- s rheMac2.3 97136473 1946 - 196418989 AAATCACCCTCATGAGAGCATTATG----------CAATTTTATCTGTCTATATTCTATTTCTA-CTTTATAT-TG-TTGTTATA-GTATAGC-------------TATATAGGAGTG----T--TTTCTATCATTGCAAAAGCCAGATAAA---ATAG-TT----------TACTACATCAAG-TGGGGAATT------ATATATATAAAT--------------------TGTCTGCTGCTGTCGATAGATTATGTCTGTAAAAGTTAAAAGCA-TTTTTCCCC-TTTCAG------------AGAGAACACTCCCAA--TGCCTTCCT---TTGCCTC--AT-----ATAAA-TT-ATCTTTTAAGGGACCAGGTGCAATGGGCAAAGA-GTTGGCTGTCTTCCCAACCCAGCTCTGCAT---------------------ACTTGTAGAGCTAGGGGTCACAGAAATGCAGAATTT--AGAGTTTAAAG---CCAAGTCAAGAATTAT---------------------TTTCCTGCAT-CTTTTG-CCTTAGGGGAGA----GAAA----GGGT--GG-----GGGAATGGCAATTTAGGAGAAGTTA-CCTGAATTGAGATGAATTTAATTG-----------C-TTTTCCTGTTA-ATCT--CCCTGCCTACACAGGTGGCTATGAGAGTCCTCTC-TATCTCCACAGATCCATGTCA--GTGTGAACATTAAGAGGAACCAAGAATTTGGAAATCTGG--------TCCAGGCAGTTCTCCAGCTTTGTTCCAGATGC-------------AGGATGAGCACA--ATTCT-ATTGGAAGCATTTGTGTGTATGACATGATTAGACAATTAATATCCA--GCAGAACACCAG---------TGCCTACTCCTCCGAAACAAGTTTGGAGTTAGTCCCAGAAAG--CG--TAGGTC-------CACA-GTGGCATG-GGACT--T-TTTG-TAGAGTTGATTGATACTCCAT-AGCATTTATTTA-----------------------------------AAAGATATTATTTTGAACTGT--ATGAGGCCTG-CTCCAGAGTACTCTTGGGAGGACAAGAAATTTCTAAC---TAACTAGG-----AAATGACTAGCAGG-GAGGCTGCCTTGGGATATTGTTCAGACAGAGAAAGTAAAATTACCC-TTCACCTTGGTTTCTCAATTTGCTACCATTATCCCTCT-ATACTCCTATG-C------CCAGTATGCTAT----GGTCAAATG---AGAAGATT-CTTTTTACATTTTGCTCTATTTAAGAAAG----GCAGTGCAATCCCATGTA-TTTCTAAC-----GGACTAAGA--TCAAGTCTAACTTCTGAAGTGATTT-TCAGGA-AATGTCTTAGAACAT-------GATTATCTTTTAGACACCA-GTCAAGTTGGAAGCTGAGGAGAGAGACAGAG--CCTCTGCATCTTCTGTTCCTTGACC-----TGCTCT------------TCATATAGCCAGCTTCTCATCCTTCAGGTCTTGGTTTAAATGTCATTTTCTCA---------------------------------------------------------------------------------------------------------AGATCT---------TTCATTACC----------------ACCCTTTCT----------------------------AGG-----TTCCCTAAACC------TCCATCCCC----------------AGCACTTTATTTATCTCCTTCATGAAATGATTACA-----CAATTACTTTAATTGTGTACTTCTTTTCTTC----TCTCT-----TCTCTCTCTGCCCCACAAGAA----------TGGA-------AGCTTCTTGAGG-TATTATATTTCCAGGACCCAACAAGTACT-TCAAACAC----AGTATACCTACA--GT--------GTATATATGGCATACCCAAAAAAGATTTATAAATGAAAAGAGTACTGAAAATAACTGAGGA-ACTTTACTGAA-------ACATTT---AAAACATTTTATTTTTGATAAGTATATCAGTAAGC--TCTACTATATTATTCA-CAATAACAAC-----TCCA---AAAATCTCAAGACTTAAAAA----AG-ATTGTTTCTTGCACACCTTTTTTTTTTTTTTTTTTTAAATGAGACGGAGTTTCACTCTTGTTGCTCAGGCTGGAGTGCAAAGGCGTGATCGCGGCTCACAGCAACCTCTACCTCCTGGG-----TTCAAACGATTCTCCTGCTTCAGCCTCCCAAGTAGCTGGGATTACAGGCGTCTGCCACCGCGCCCAGCTAATTTTTTGTATTTTTAGTAAAGCCGGGTTTTCATCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCCAGCC--- a score=-71.4 s hg18.7 26952453 245 + 158821424 ttgcttactttttatgtg----------------agctgcagctttgcccctgtgg-tcttcattccttggccca-ggttgatgcagtggaccc-tatctggga-cattccctgaatcatctcattctcatgggcagagggaaaagaacaacga--ctgtagg--aaatatacagtgtgtcttaaactaggatctgaagtacagca---cttctgttcat----aAGATGTTCTCTTACA---AT-------AGAAATTTCT----A-GA--AAAATAATACAATCAGCCACA s panTro2.7 27289100 244 + 160261443 ttgcttactttttatgtg----------------agctgcagctttgcccctgtgg-tcttcattccttggccca-ggttgatgcagtggaccc-tatatggga-cattccctgaatcatctcattctcatgggcagagg-aaaagaacaacga--ctgtagg--aaatatacagtgtgtcttaaactaggatctgaagtacagca---cttctgttcat----aAGATGTTCTCTTACA---AT-------AGAAATTTCT----A-GA--AAAATAATACAATCAGCCACA s rheMac2.3 97138422 245 - 196418989 TTGCTTACTTTTTATGTG----------------AGCTGCAGCTTTGCCTCTGTGG-TCTTCATTCTTTGACCCA-AGTTGATGCAGTGGATCC-TATCTGGGA-CATTCCCTGAATCATCTCATTCTCATGGGCAGAGGGAAAAGAACGACGA--CTGTAGG--AAATATACAGTGTGTCTTAAACTAGGATCCGAAGTACAGCA---CTTCTGCTCAT----AAGATGTTTTCTTACA---AC-------AGAAATTTCT----A-GA--CAAACAATACAATCAGCCACA a score=1267.4 s hg18.7 26952698 725 + 158821424 AGGATATTGTTCAGAAACTG----TTA-CTAAAAATTTGTA------G--TCT-GTTTATATTTATGTATATTGT---ATGTTAATGTTTAT------------------------------------------ATTTGCA------GTTTA-------------AC-TGTGTTTATATTTGTGTATATTG-----------GTCTTTATTCACTGGGTTTCTTGAATTGC--AGA-GTCATATCAGAAATTCTGCATATCCTAAAACTTAAGACACGTA---GATG--------------------------AGTGGTACTTTTTTTCTGTTTCCCTACTTAAGTATGTCTTTGCAATTCCT------TGGCCTGAATATT--T-TGTTGGTATTTACATGTCTTCATCT---GTACAATAGA----------AAGC-TAAGAGCCTGAAACTTCTGAGTGGCTTTAGTTCTGCCAGTATCGAAGGAAGCTGGCA----------------CTGATAAAAGTTCTTCCACGGTCAGAGTA-AATGACTGGAATAGATAAAGAGAGGCTATATTTGGCCTAA--ATCCTTACGGTGAC-Ttt------------tttttttctttttcttttttttttttttgagacagattttcactcttgttgcccacgctggagtacaacggcgtgatctgggctcactgcaacctccaccttccaggttcacgcaattctcctgcctcagcctcccaggtagctgggattacaggcacccaccaccacgcccagctaattttttgtatttttagtagatacagggtttcattacattggccaggctggttgcgaactcctgacctcaagtgatccacctgcctcagcctcccaaagtgctgggattac s panTro2.7 27289344 725 + 160261443 AGGATATTGTTCAGAAACTG----TTA-CTAAAAATTTGTA------G--TCT-GTTTATATTTGTGTATATTGT---ATGTTAATGTTTAT------------------------------------------ATTTGCA------GTTTA-------------AC-TGTGTTTATATTTGTGTATATTG-----------GTCTTTATTCACTGGGTTTCTTGAATTGC--AGA-GTCATATCAGAAATTCTGCATATCCTAAAACTTAAGACACGTA---GATG--------------------------AGTGGTACTTTTTTTCTGTTTCCCTACTTAAGTATGTCTTTGCAATTCCT------TGGCCTGAATATT--T-TGTTGGTATTTACATGTCTTCATCT---GTACAATAGA----------AAGC-CAAGAGCCTCAAACTTCTGAGTGGTTTTAGTTCTGCCAGTATCGAAGGAAGCTGGCA----------------CTGATAAAAGTTCTTCCACGGTCAGAGTA-AATGACTGGAATAGATAAAGAGAGGCTATATTTGGCCTAA--ATCCTTACGGTGGc-ttt------------tttttttctttttctttttcttttttttgagacagattttcactcttgttgcccacgctggagtacaatggcgtgatctgggctcactgcaacctccaccttccaggttcacgcaattctcctgcctcagcctcccaggtagctgggattacaggcacccaccaccacgcccagctaattttttgtatttttagtagatacagggtttcattacattggccaggctggttgcgaactcctgacctcaagtgatccacctgcctcagcctcccaaagtgctgggattac s rheMac2.3 97138669 473 - 196418989 AGGATATTGTTCAGAAACTG----TTA-CTAAAAATTTGTA------G--TCT-GTTTATATTTATGTATATTGT---ATGTTAATGTTTAT------------------------------------------ATTTGCA------GTTTA-------------ACTTGTGTTTATATTTGTGTATATTG-----------GTCTTTATTCACTGGGTTTCTTGAATTAC--AGA-GTCATATCAGAAATTCTGCATATCCTAACACTTAAGACATGTA---GATG--------------------------AGTGGTACTTTTATTCTGTTTCCCTACTTAATTATGTCTTTGCAATTCCC------TGGCCTGAATATT--T-TGTTGGTATTTATATGCCTTCATCT---GTACAATATA----------AAGC-CAAGGGACTCAAATTTCTAAGTGACTTTAGTTCTGCCAGTATTGAAGGAAGCTGGCA----------------TTGATAAAAGTTCTTCCACGGTCAGAATT-AATGACTGGAATATATAAAGAGAAGCTATATTTGGCCTAA--ATCCTTACAGTGAC-TTT------------TTTTTTT-------------TTTTTTTTGAGACAGATTTTCACTGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ # synteny group 0 a score=1292.2 s hg18.7 26953423 1062 + 158821424 aggtgACATTTAAGTAATAAACT-----TTATCCTATGAACAATGCCTTAACACAAAG----TT----AGTCAGTCATAAACT---ACCTATGTGTTCAATTTTGACTGCCA----ACTTTGGTAT-CTGT----GTA---CGTT---TAATTTCCATATTTATAATAGCTTCCTCTAACAGTTTTCAGCACTACATTGGTAATATTGTT-GGGAATACCTA-CTTGAGATGAAAG-TTTTGAACTATGATCTTAGCCACAGTAAAAAAAGAAAATTAAACCAcctggcactgtggcttatgcctgtgatcccagcactttgggaggccgaggcgg--------tctgaggttgggagttcaagaccagcctgaccaacacagagaaaccccgtctctactaaaatacaaaattagccaggcgtggtggcgcatgcctgtaatcccagctactcaggag-gctgaggcaggagaattgcttgaaaccggtaggcagaggttgtggtgagccgagatcgtgccattgcactc------------caagagtgaaagtccgtctcaaaaaaaaaaaaaaaaaaaaaaagaaag-------aaAAAGAAAATT--ACCAAAAACAACTCTCAACT------------GAGAACTTGTATG-------TTGAA--AGTTTTTTTTTGTCTTGTGACCTTTC-TCC--AATCTTGTATCATGTAAAA-TTATACTCTATAGAATACTGTGGATGGCA-CTTTTTACAAGGAATTATCTTTTAGAAA------------CTATTTAC-AATATAAACCAACATTGCAAG-ACTTTATATGTACATTTT-AGAAAACTAAGGATATATGTG-----T-GCATGGATA-----AAT-------AAAATAATATGTGAGCTC-TATCTATTTTGCCCTGTGAGATGTATCAATCAT----AGCATCCAGAGTAAGTGGGTACAGAATTTAAGATCAAAATCTCTCCAGTTCCATGGACAGCTCCT--ATGAAC---------AAAA-GCCAAAGAGT-GTGATTACCATCT--------CACTGAGAA--TTTCCCTCTGTT----------------------TAC-TCTGTCCTCTTCCCAGATATTA--TTCTTAGCTGCCTTACCATTTCCTTTT-AAATCTCATTTTCCAAATGT--------------------CCACCA-------------------CTGA-GCCTGGGC--AG------TC---------TTCAGTTTAGACATAA---AGGCTTATAG s panTro2.7 27290069 1076 + 160261443 aggtgACATTTAAGTAATAAACT-----TTATCCTATGAACAATGCCTTAACACAAAG----TT----AGTCAGTCATAAACT---ACCTATGTGTTCAATTTTGACTGCTA----ACTTTGGTAT-CTGT----GTA---CGTT---TAATTTCCATATTTATAATAGCTTCCTCTAACAGTTTTCAGCACTACATTGGTAATATTGTT-GGGAATACCTA-CTTGAGATGAAAG-TTTTGAACTATGATCTTAGCCACAGTAAAAAAAGAAAATTAAACCAcctggcactgtggctcatgcctgtgatcccagcactttgggaggccgaggcgg--------tctgaggttgggagttcaagaccagcctgaccaacacagagaaaccccgtctctactaaaatacaaaattagccaggcgtggtggcgcatgcctgtaatcccagctactcaggag-gctgaggcaggagaattgcttgaaaccggtaggcagaggttgtggtgagccgagatcgtgccattgcactc------------caagagtgaaagtctgtctcaaaaaaaaaaagaaagaaaa---gaaag-------aaaaaGAAAATT--ACCAAAAACAACTCTCAACC------------GAGAACTTGTATG-------TTGAA--AGTTTTTTTTTGTCTTGTGACCTTTC-TCC--AATCTTGTATCATGTAAAA-TTATACTCTATAGAATACTGTGGCTGGCA-CTTTTTACAAGGAATTATCTTTTAGAAA------------CTATTTAC-AATATAAACCAACATTGCAAG-ACTTTATATGTACATTTT-AGAAAACTAAGGATATATGTG-----T-GCATGGATA-----AAT-------AAAATAATATGTGAGCTC-TATCTATTTTGCCCTGTGAGATGTATCAATCAT----AGCATCCAGAGTAAGTGGGTACAGAATTTAAGATCAAAATCTCTCCAGTTCCATGGACAGCTCCT--ATGAAC---------AAAA-GCCAAAGAGT-GTGATTACCATCT--------CACTGAGAA--TTTCCCTCTGTT----------------------TAC-TCTGtcctcttcccagatatta--ttcttagctgccttaccatttcctttt-aaatcttattttccaaatgtttagtcattt-ttatt--atccacca-------------------ctga-gcCTGGGC--AG------TC---------TTCAGTTTAGACATAA---AGGCTTATAG s rheMac2.3 97139499 1071 - 196418989 ----------------------------------TACGAACAATGCCTTAACACAAAGTTAATT----AGTCAGTCATAAACT---ACCTGTGTGTTCAATTTTGACTGCTA----ACTTTGGTAT-CTGT----GTA---CCTT---TAATTTCCACATTTATAATAGATTCCTCTAACAGTTTTCAGCACTACATTGGTAATATTGTT-GGGAATACCTA-CTTGAGATGAAAG-TTTTGAACTGTGATCTTAGCCACAGTAAAAAAAGAAAATTAAACCACCTGGCACGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCACCAAAGGTTGGGAGTTCAAGACCAGCCTGACCAACATGGAGAAACCCCATCTTTACTAAAATACAAAATTAGCCGGGCGTGGTGGTGCATGCCTGTAATCCCAGCTACTCGGGCG-GTTGAGGCAGGAGAATTGCTTGAAACTGGGAGGCAGAGGTTGTGGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGCAACAAGAGTGAAACTCCGTCTCAAAAAAAAAAAAAAAGAAAGAAAGAAAG--------AAAAGAAAATT--ACCAAAAACAACTCTCAACT------------GAGAACTTCTATG-------TTGAA--AGTTTCTTTTTGTCTTGTGACCTTTC-TCC--AATCTTGTATCATGTGAAA-TTATACTCTATAGAATACTGTGGATGGCA-CTTTTTACAAGGAATTATCTTTTAGAAA------------CTATTTAC-AATATAAATCAACATTGTAAG-ACTTTATATATACGTTTT-AGAAAACTGAGGATATACGTG-----T-GCATGGGTA-----AAT-------AAAATAATATGTGAGC-----TCTATTTTGCCCTGTGACATATATCAATCAT----AGCATCCAGAATAAGTATGTAAAGAATTTAAAATCAAAATCTCTCCAGTTCCATGGACAGCTCCT--ATGAAC---------AAAA-GCCAAAGAGT-GTGATTACCATCT--------CACTGAGAA--TTTCCCTCTGTT----------------------TAC-TCTGTCCTCTTCCCAGATATGA--TTCTTAGCT-CCTTACCATTTCCTTTTAAAATCTTATTTTCCAAAGTTTTAGTCATTT-TTATT--ATCCACCA-------------------CTGA-GCCTGGGCAAAG------TC---------TTCAGTTTAGATATAA---AGGCTTATAG a score=5741.4 s hg18.7 26954485 2253 + 158821424 AAGA----CAACAA-AAGTATGT------ATCCAGCATGTAA-AC-AAAA---AT----ATGCTCCTTGTC-ACAAGGAGTT--TACATTAAAGGT-----AAAGAAATTTCTCAAGTTTCATATAT--------------------ACAAATTT------------------GTGTAA---------ACC-----CTAT-GGA-GAA--CT---------CCAAAGAGG--AGCC---AT-TTTCTTATTAAGTA--------CCATTTT-TCTCAGT---ATTTAAAACATAC---AAGGGAAGAAAGCAA----------CAAT------TTAG--CCCTTTGTA-------------------------TA------------AAAGAAA--CAGGATCAGGTTCGTT----TCCTGTTCCTCTTCCTTAGAGAC---AACTACATCCATTTCTGATCA-TTTTCGTACCTGCTGTGGTTCAGTCAACTTCTCT-AATAG-TTGTG---G-AATGTGAAA-C-ATCTACATAAGATT-GTGGGAGAC--------C--TTTTTTT-T-TTCCTA-------CAGTCACT---ACCAG---ATGCAAACAAGGTGATATGTCCCTGCA---TGCTACTATTGCTAAACT-GTGAGC------AAAGAAAGGAAA------AAGACTGATTTAGAGCATACATTTAAGATG----CTTGT-TAAGTGAAATGTCAAG-TAGA-TTCATG--TCTTGC------------CTT-GTTGATCACCAGCCAATC----AATGACTCTTAAACCTGAAATGACCAGGTCAACTTGCTACCACTGCTACCAAG--------TGAGAGAGAGA-CTGCAT------AGATCATCACTCAGAATGACAATTACTATG-TAGAGCTATAGTAATTCCAT---------AAGCCCT-----GGCCATTGTCTTGCTTAGCAAGAGGCTTCCTATGC-TCT-CACAGCTAAATACCAGCTCA-CTCAGATCCTGACACAAG-GGAAAC-AAAAAGGCCTTTGGGATAT-CAACTCCCTGGT-GACCCAGGTCTGATCAGAAT---------------------TGA---ATT---TT------AC----------TCCG-------------------------CTTAGAACAAG-------------------TTTTTGTG------------T-TTTTTTTTTT-TA---------------------------------AGGATTATGGTAAATG-AAGC---------CTTTG----AGT--GAGCTGTGTTCTTTCTTTTG------------------CATATAAATGAATATAAATATGAATATGAATACAATCAATAGAT-AGACATCT--GCCATCTTCTTACCACTGCCACCCATCCCAGTGAC-------------T------TT---TTGTT-GTTTACTCA-------GACT-AA---AATGTCATCATAAGATAAAAATCCATCT-------ATATTTCTATTTGGGATCAATAC--TACATATTTACTGTTA-CTTGTCATCC-TTTGATATGTG-TACTTGTTGTAGCATGTAATCCTTAAATTTGGTCTGGAGATGTGAAGATTTCATCAAATCCCCC---AAGATC-AAAAGCCTTAAAA--TTTTTGTTTGCATTTACATGCAAAGCTTACAAAGTTCTCAAGGGGGA-AACAGTGA------------TAA-------------------------------------------------------------------------------------------------GAGCATTCTT-CAAACGCTTGT-TAATTG----TTAACTGTCAAATCCTGATGGTGAAATCTCAGAGGTTTGTTTTAACAGG----------GGT------AAAAACATGA--TGTTAATTTTAAGTTT-TCTTAAA-C-T-CAGTGGTGA----ACACT--------AACAAT-A--T------TTTTTCTCA---CCAG---CTC-ACT----------TAAAATATA----AGTGTAATTGTTAGTCAAAGCTAAAA-GTCATACAAAAACATCAACTTGTTT-TCACTCTTTGAAAGACAGATGTAGAGTCTGCCTGGAGGATCATAAT---------TAAGGCA-AACTAAGTGGGGAAACTGGT----ATTTTAGG-CACA-TTATTTTAAA-TC-ACTCAAG--TCCC-TAAAGAAATTTTCAGTAACAGCTGTTACTTTGATCATCCTAATACCGTTG-AAAA------ATAATATGTAAGATTAGAC------------------TA-CTATATAT----CCCTAAAATTAGCAATGAGCTGAAAG----ATAGAGATA-TACA-TCACATTTTTTAATCTGCCTGTCTTACTTCAGGATGACTTAATTAAC-------AATGAAACCATCT--------GAAAAGACGATGCTAAATCAACTCAATAAAGAGACCTACTA-T-TCAGCA-CCTAAGATCACAAGTTCA---AGTATATTATAAAGTGTATATGTGt----at-----------------------------------taatatattac-tttatat----------ataat----------------tgt-atttc---tat-aaaataaaactg-----aattaatcatttac------aaaa--taataaaaat------ca-ctt-------tggctaa----------ttttataaata----ata-----a-tttttt---aaaaCCTCATTTT-T-ATGA-TGAAATATGCAAAT--------------------------------TATTATA--TGAACACTTCTC------AAA----CCCATACTTCTTAAT-GGTCTAGTATTACAGTTCACATA----------------TAATCTATATC----CTA------------------------------------------ATGAGCCTAG------------TTGTCGATGACATTCTCTG-TACACATAGTCTTCAGAACTGGCAGGA-TTTTC-ACAGTAACTGACCATC-TTCCACCTTAAAATATTCAGTGATAATGATGGCTCTCCCA---TTTTTTA-----AATCTCT--------------AGATCAAGCTATTTAATATATT-AA-----------TACTATCAAAACAGAAAATCGTATAGATAATTTTTTTTTAAAAAAGCAAAAA s panTro2.7 27291145 2254 + 160261443 AAGA----CAACAA-AAGTATGT------ATCCAGCATGTAA-AC-AAAA---AT----ATGCTCCTTGTC-ACAAGGAGTT--TACATTAAAAGT-----AAAGAAATTTCTCAAGTTTCATATAT--------------------ACAAATTT------------------GTGTAA---------ACC-----CTAT-GGA-GAA--CT---------CCAAAGAGG--AGCC---AT-TTTCTTATTAAGTA--------CCATTTT-TCTCAGT---ATTTAAAACATAC---AAGGGAAGAAAGCAA----------CAAT------TTAG--CCCTTTGTA-------------------------TA------------AAAGAAA--CAGGATCAGGTTCGTT----TCCTGTTCCTCTTCCTTAGAGAC---AACTACATCCATTTCTGATCA-TTTTCGTACCTGCTGTGGTTCAGTCAACTTCTCT-AATAG-TTGTG---G-AATGTGAAA-C-ATCTACATAAGATT-GTGGGAGAC--------C--TTTTTTT-T-TTCCTA-------CAGTCACT---ACCAG---ATGCAAACAAGGTGATATGTCCCTGCA---TGCTACTATTGCTAAACT-GTGAGC------AAAGAAAGGAAA------AAGACTGACTTAGAGCATACATTTAAGATG----CTTGT-TAAGTGAAATGTCAAG-TAGA-TTCATG--TCTTGC------------CTT-GTTGATCACCAGCCAATC----AATGACTCTTAAACCTGAGATGACCAGGTCAACTTGCTACCACTGCTACCAAG--------TGAGAGAGAGA-CTGCAT------AGATCATCACTCAGAATGACAATTACTATG-TAGAGCTATAGTAATTCCAT---------AAGCCCT-----GGCCATTGTCTTGCTTAGCAAGAGGCTTCCTATGC-TCT-CACAGCTAAATACCAGCTCA-CTCAGATCCTGACACAAG-GGAAAC-AAAAAGGCCTTTGGGATAT-CAACTCCCTGGT-GACCCAGGTCTGATCAGAAT---------------------TGA---ATT---TT------AC----------TCCG-------------------------CTTAGAACAAG-------------------TTTTTGTG------------TGTTTTTTTTTT-TA---------------------------------AGGATTATGGTAAATG-AAGC---------CTTTG----AGT--GAGCTGTGTTCTTTCTTTTG------------------CATATAAATGAATATAAATATGAATATGAATACAATCAATAGAT-AGACATCT--GCCATCTTCTTACCACTGCCACCCATCCCAGTGAC-------------T------TT---TTGTT-GTTTACTCA-------GACT-AA---AATGTCATCATAAGATAAAAATCCATCT-------ATATTTCTATTTGGGATCAATAC--TACATATTTACTGTTA-CTTGTCATCC-TTTGATATGCG-TACTTGTTGTAGCATATAATCCTTAAATTTGGTCTGGAGATGTGAAGATTTCATCAAATCCCCC---AAGATC-AAAAGCCTTAAAA--TTTTTGTTTGCATTTACATGCAAAGCTTACAAAGTTCTCAAGGGGGA-AACAGTGA------------TAA-------------------------------------------------------------------------------------------------GAGCATTCTT-CAAACCCTTGT-TAATTG----TTAACTGTCAAATCCTGATGGTGAAATCTCAGAGGTTTGTTTTAACAGG----------GGT------AAAAACATGA--TGTTAACTTTAAGTTT-TCTTAAA-C-T-CAGTGGTGA----ACACT--------AACAAT-A--T------TTTTTCTCA---CCAG---CTC-ACT----------TAAAATATA----AGTGTAATTGTTAGTCAAAGCTAAAA-GTCATACAAAAACATCAACTTGTTT-TCTCTCTTTGAAAGACAGATGTAGAGTCTGCCTGGAGGATCATAAT---------TAAGGCA-AACTAAGTGGGGAAACTGGT----ATTTTAGG-CACG-TTATTTTAAA-TC-ACTCAAG--TCCC-TAAAGAAATTTTCAGTAACAGCTGTTACTCTGATCATCCTAATACCGTTG-AAAA------ATAATATGTAAGATTAGAC------------------TA-CTATATAT----CCCTAAAATTAGCAATGAGCTGAAAG----ATAGAGATA-TACA-TCACATTTTTTAATCTGCCTGTCTTACTTCAGGATGACTTAATTAAC-------AATGAAACCATCT--------GAAAAGACGATGCTAAATCAACTCAATAAAGAGACCTACTA-T-TCAGCA-CCTAAGATCACAAGTTCA---AGTATATTATAAAGTGTATGTGTGt----at-----------------------------------taatatattac-tttatat----------ataat----------------tgt-atttc---tat-aaaataaaactg-----aattaatcatttac------aaaa--taataaaaat------ca-ctt-------tggctaa----------ttttataaata----ata-----a-tttttt---aaaaCCTCATTTT-T-ATGA-TGAAATATGCAAAT--------------------------------TATTATA--TGAACACTTCTC------AAA----CCCATACTTCTTAAT-GGTCTAGCATTACATTTCACATA----------------TAATCTATATC----CTA------------------------------------------ATGAGCCTAG------------TTGTCGATGACATTCTCTG-TACACATAGTCTTCAGAACTGGCAGGA-TTTTC-ACAGTAACTGACCATC-TTCCACCTTAAAATATTCAGTGATAATGATGGCTCTCCCA---TTTTTTA-----AATCTCT--------------AGATCAAGCTATTTAATATATT-AA-----------TACTATCAAAACAGAAAATCGTATAGATAATTTTTTTTTAAAAAAGCAAAAA s rheMac2.3 97140883 2216 - 196418989 AAGA----CAATAA-AAGTATGT------AGCCAGCATGTAA-AC-AAAA---AT----ATGCTCCTTGTC-ACAAGGATTT--TACATAAAAAGT-----AAAGAAATTTCTCAAGTTTCACATGT--------------------ACAGATTT------------------GTGTAA---------ACC-----CTAT-GGA-GAA--CT---------CCAAAGAGG--AGCC---AT-CTTCTTATTAACTA--------CCATTTT-TCTCAGT---ATTTAAAACATAC---AAGGGAAGAAAGCAA----------CAAT------TTAG--TCCTTTGTA-------------------------TA------------AAA-------AGGATCAGGTTCATT----TTCTGTTCCTCTTCCTTAGAGAC---AACCACATCCATTTCTGATCA-TTTTCCTACCTGCTATGGTTCAGTCAACTTCTCT-AATAG-TTGTG---G-AATGTGAAA-C-GTCTACATAAAATT-GTGGGAGAC--------C--TTTTTTT-TCTTCTTA-------CAGTCACT---ACCAG---ATACAAACAAGGTGATATGTCCCTGCA---TGCTACTATTGCTAAACT-GTGAGC------AAAGAAAGGAAA------AAGACTGATTTAGATCATACATTTAAGATG----CTTGT-TAAGTGAAATGTCAAG-TAGA-TTCATG--TCTTGC------------CTT-GTTGATCACCAGCCAATC----AATGACTCTTGAACCTGGAATGACCAGGTCAACTTGCTACCACTGCTACCAAG--------TGAGAGAGAGA-CTGCAT------AGATCATCACTCAGAATGACAATTACTATG-TAGAGCTATAGTAATTCCAC---------AAGCCCT-----GGTCATTGTCTTGCTTAGCAAGAGGCTTCCTATGC-TCT-CACAGCTAAATACCAGCTCA-CTCAGATCCTGACACAAG-GGAAAC-AAAAAGGCCTTTGGGATAT-CAACTCCCTGGT-GACCCAGGTCTGATCAGAAT---------------------TGA---ATT---TT------GC----------TCTG-------------------------CTTAGAACAAG-------------------CTTTTGTGG---CTTTTTTTT-TTTTTTTTTT-AA---------------------------------AGGATTATGGTAAATG-AAGG---------CTTTG----AGT--GAACTGTGTTCCTTCTTTTG------------------CATATAAATG------AATATGAATATGAATACAGTCA----AT-AGACATCT--GCCATCTTCTTACCACTGCCACACATCTCAGTGAC-------------T------TTTTGTTGTT-GTTTACTCA-------GACT-AA---AATGTCATCATAAGATAAAAATCCATCT-------ATATTTCTATTTGGGATCAATAC--TACATATTTACTGTTA-CTCGTCATCC-TTTGATATGTG-TACTTGTTGTAGCTTGTAATCCTTAAATTTGGTCTGGAGATGTGAATATTTCATCAAATCCCCC---AAGATC-AAAAGCCTTAAAA--TTTTGGTTTGCATTTACATGCAAAGTTTACAAAGTTCTCAAGGGGGA-AACAGTGA------------TAA-------------------------------------------------------------------------------------------------GAGCATTCTT-CAAACCCTTGT-TAATTG----TTAACTGTCAAATCCTGATGGTGAAATCTCAGAGGTTTGTTTTAACAGG----------GGT------AAAAACATGA--TGTTAATTTTAAGTTT-TCTTAAA-C-T-CAGTGGTGA----ACACT--------AACAAT-A--T------TTTTTCTCA---CCAG---CTC-ACT----------TAAAATATA----AGTGTAATTGTTAGTCAAAGCTAACA-GGCATACAAAAACATCAACTTGTTT-TCTCTCTTTGAA----AGATGTAGAGTCTGCCTGGAGGAAAATAAT---------TAAGGCA-AACTAAGTGGGGAAACTGGT----ATTTTAGG-CACA-TTATTTTAAA-TC-ACTTAAG--TCCC-TAAAGAAATTTTCAGTAACAGCTGTTACTTTGATCATCCTAATACCGTTG-AAAA------ATAATATGTAAGATTAGAC------------------TA-CTATATAT----CCCTAAAATTAGCAATGAGCTGAAAG----ATAGAGATA-TACA-TCATATTTTTTAATCTGCCTATCTTACTTCAGGATGACTTAATTAAC-------AATGAAACCATCT--------GAAAAGACGATGCTAAATCAACTCAATAAAGAGACCTGCTA-T-TCAGCA-CCTAAGATCATAAGTTCA---AGTATATTATAAAGTGTATGTGTGT----AT-----------------------------------TAATATATTAC-TTTATAT----------ATAAT----------------TGT-ATTTC---TAT-AAAATAAAACTG---------AATCATTTAC------AAAA--CAATACAAAT------CA-CTT-------TGGCTGA----------TTTTATAAATA----ATA-----A-TGTTTT---AAAACCTCATTTG-T-ATGA-TACAATGTGTGAAT--------------------------------TATTACA--TGAACACCTCTC------AAA----CCCATACTTTTTAAT-GGTCTAGTATTAGAGTTCACATA----------------TAATCTATATC----CTA------------------------------------------ATAAGCCTAG------------TTGTCGATGACATTCGCTG-TACACATAGGCTTCAGAACTGGCAGGA-TTTTC-ACAGTAACTGACCATC-TTCCACCTTAAAATGTTCAGTGATAATGATGGCTCTCCCA---TTTTTTA-----AATCTCT--------------AGATCAAGCTATTTAAAATATT-AA-----------TACTATCAAAACAGAAAATCATATA--------------------------- a score=905.8 s hg18.7 26956738 343 + 158821424 T------TTTTTTG---TT-CGTTTTTGTTTAG-AATAGTGTACCCAGAAATA--------TTTACTTCTATTCAGGAGGTAAT-AAAAAGTGATA-----AAGAATTTTGCC----TAGTTTACTTTCTAA-----TATTTCCT--ATATATAATACGT--ACTGCATATTCTAACA-TTTCCCATTTTACATTTCTTG-AAG---AGATTGAATCAGTGCAATTTCATGCCTACAGATTTTCAGTTTCTAACGTTCAATGACT-------------------AAATGG--TGGGT--G----------ACT-GAGCAATTCTAA-------ATTGTG------------------CTTTTAAGAGGAATAACTGTCCA------------------AAAGGAACTCATTTAGTAGCTCACTTTCTGTGTGAACATTTGTCA--TTTACTTTTCTTATTTTTTT s panTro2.7 27293399 343 + 160261443 T------TTTTTTG---TT-CGTTTTTGTTTAG-AATAGTGTACCCAGAAATA--------TTTACTTCTATTCAGGAGGTAAT-AAAAAGTGATA-----AAGAATTTTGCC----TAGTTTACTTTCTAA-----TATTTCCT--ATATATAATACGT--ACTGCATATTCTAACA-TTCCCCATTTTACATTTCTTG-AAG---AGATTGAATCAGTGCAATTTCATGCCTACAGATTTTCAGTTTCTAACGTTCAATGACT-------------------AAATGG--TGGGT--G----------ACT-GAGCAATTCTAA-------ATTGTG------------------CTTTTAAGAGGAATAACTGTCCA------------------AAAGGAACTCATTTAGTAGCTCACTTTCTGTGCGAACATTTGTCA--TTTACTTTTCTTATTTTTTT s rheMac2.3 97143113 335 - 196418989 -----------------TT-TGTTTTTGTTTAG-AACAGTGTACCCAGAAATA--------TTTGCTTCCATTCAGGAGGTAAT-AAAAAGTGACA-----AAGAATTTTGCC----TAGTTTACTTTCTAA-----TATTTCCT--ACATATAATATGT--ACTGCATATTCTAACA-TTTCCCATTTTACATTTCTTG-AAG---AGATTGAATCAGTGCAATTTCATGCCTACAGATTTTCAGTTTTTAACACTCAGTGACT-------------------AAATGA--TGGGT--G----------ACT-GAGCGATTCTAA-------ATTACG------------------CTTTTAAGAGGAATAACTGTCCA------------------AAAGGAACTAATTTAGTAGCTCACTTTCTGTGTGAAAATTTGTCA--TTTACTTTTCTTACTTTTTT # synteny group 0 a score=2063.8 s hg18.7 26957081 737 + 158821424 AACTG-TTTATTGTAAT-TAGTAGAAATATTTTTATCATTTCCATTTG---------TTTTT-CTCTGATCG-GCCTGAGTGGTAA-CATTATTCCTGGAAATGCAAGTCAGGGGAAGGAGAGCACT-TCCAGGAATATAACCACAATGAAGTGA--TTTGGC---CTAAATATAGGCATTTTAATTGAGTGCATGTAGA-CACAGAA-----CATTT----------CCTAAGAATA--GTGTAAAATCTCC-AACTGTGATTTCAAA--TTAAGATGCTATTGAAAA-CTCTCAAGCCTATTTCCTTAGCTCAA-CTTTACTATTTT---AATCCTC------AGCATGAAGAGGTACGGAAAAGTCATACACAG----ACTCTGAAAAGGCTAATCA-----TTTT-ACTCTAATAACTTTTGTTTTT-----TATTTTAGAATT--TGCTGTAACCCACATATACTCTTCTCTGAGAAAAGGTAACTATTGTGATTTACA-----------TTTTAACAGTGA----TCATAAGAAAATATTTTTCAG-CATTTTGGATACTTGAGGGCT-AATCAGGCACTAAATTAGGTACTGGTGGTCACTAGGGGCAGACATGC----AAAG----ACC--CTCT-T-CCCTGTATTTCAGTTGTTCAGTGATACTTT-AGGTGCACAACATAATCCTGTATAAGATCTGA-----ATCCCTGAAGTTAGA----ATAAATTATGTGCAAGTTAGTTTCAGCATTAACTGAATTTTAATG--TTATA-GTCTTTGAAAATCAATTGTTGATACAGAGCTACTCCCAATCATATGAATA--CTTTAATTAC--------------CA s panTro2.7 27293742 737 + 160261443 AACTG-TTTATTGTAAC-TAGTAGAAATATTTTTATCATTTCCATTTG---------TTTTT-CTCTGATTG-GCCTGAGTGGTAA-CATTATTCCTGGAAATGCAAGTCAGGGGAAGGAGAGCACT-TCCAGGAATATAACCACAATGAAGTGA--TTTGGC---CTAAATATAGGCATTTTAATTGAGTGCATGTAGA-CACAGAA-----CATTT----------CCTAAGAATA--GTGTAAAATCTCC-AACTGTGATTTCAAA--TGAAGATGCTATTGAAAA-CTCTCAAGCCTATTTCCTTAGCTCAA-CTTTACTATTTT---AATCCTC------AGCATGAAGAGGTACGGAAAAGTCATACACAG----ACTCTGAAAAGGCTAATCA-----TTTT-ACTCTAATAACTTTTGTTTTT-----TATTTTAGAATT--TGCTGTAACCCACATATACTCTTCTCTGAGAAAAGGTAACTATTGTGATTTACA-----------TTTTAACAGTGA----TCATAAGAAAATATTTTTCAG-CATTTTGGATACTTGAGGGCT-AATCAGGCACTAAATTAGGTACTGGTGGTCACTAGGGGCAGACATGC----AAAG----ACC--CTCT-T-CCCTGTATTTCAGTTGTTCAGTGATACTTT-AGGTGCACAACATAATCCTGTATAAGATCTGA-----ATCCCTGAAGTTAGA----ATAAATTATGTGCAAGTTAGTTTCAGCATTAACTGAATTTTAATG--TTATA-GTCTTTGAAAATCAATTGTTGATACAGAGCTACTCCCAATCATATGAATA--CTTTAATTAC--------------CA s rheMac2.3 97143449 735 - 196418989 AACTG-TGTATTATAAT-TAGTA-AAATATTTTTATCATTTCCGTTTG---------TTTTT-CTCTGATAG-GCCTGAGAGGTAA-TATTATTCCTGGAAATGCAAGTCAGGGGAAGGAGAGCACT-TCCAGGAATATAACCACAATGAAGTGA--TTTGGC---CTAAATATAGGCATTTTAATTGAGTGCATGTAGA-CACAGAA-----CATTT----------CCTAAGAGTA--GTGTAAAATCTCC-AACTGTGATTTCAAA--TTAAGATGCTATTGAAAA-CTCTCAAGCCTATTTTCTTAGCTCAA-CTTTACTATTTT---AATCTTCTGT---AGCATGAAGAGGTATGGAAAAGTCATACGCAG----ACTCTGAAAAGGCTAATCA-----TTTT-ACTCTAATTACTTTTTTTTTT-----TA----AGAATT--TGCCGTAACCCACATATACTCTTCTCTGAGAAAAGGTAACTATCATGATTTACA-----------TTTTAACAGTGA----TCATAAGAAAATATTTTTCAG-CATTTTGCATATTTGAGGGCT-AATCAGGCACTAAATTAGGTACTGGTGGTCACTAGGGGCAGACGTGC----AAAG----ACC--CTCT-T-CTCTGTATCTCAGTTGTTCAGTGATACTTT-AGGTGCACAGCATAATCCTGTATAAGATCTGA-----ATCCCTGAAGTTAGA----ATAAATTATGTGCAAGTTAGTTTCAGCATTAACTGAATTTTAATG--TTATA-GTCTTTGAAAATCAATTGTTGATACAGAGCTACTCCCAATCATATGAATA--CTTTAATTAC--------------CA a score=276.4 s hg18.7 26957891 2558 + 158821424 ggcgccatggctcacgtctttaattctagcactttgg-----gaggctgaagcagcaggattgcttgagtccaagagtttgagactagtctgggcaacaacacagggagacctctatatctaaaaaagttaaaaaattatccaggcatggtggcgcatgcacctgtggtcc-cagcttctcgggaggctgaggtgggaagatcacttgagctcaggagatgggggctgcagtgagccgtgatcgtgccactgcactccagcctgggaaacagaacaagattctgcctc---------aaaaaaaaaaaaaaaaaaaaaaaGTTTAGTAGTTGATACTCTACTAAAATT-TCTCTTTTTCCACCATCATTTTAGTG-TATTTCTTGAGA----------------------------TACTGCTTCTAATTG--AGATTATCACTCTCCTTATACTAC-AGTGCC-TGGG-AT---------TCTTCTTTGTTTA-GCCATAGAAGTTACCAAAGCC-TTTTATGCAGCTCCTGATTGCAAAGATTCC-ACTAGTA-TTAAAT----ATCAAGCACAC-CAAAGTTTGG--TTCACAGACATGCACAAAAGAGTAAGCAAATTAATTACTTTTACTATCCTAAGAT--AACAAAGAACAAAACAAATAAATTTTC-CTTTGGTTTACCTTTGGTATCCTAG--------------CACTCTATTTTGCATG--AATCCTTCAGCACA-TCA-------CGAGTG---------AAGACA-AAGTTTGGAGCTAAG--------------AGCTG--------ATAAGACTAAATCAAAGATGTTT-T-TTCTCCCTAAGACCTTCTGTG-----------------------------------AAA------------ACAATGTTAAATTATTCTCGTTCTGAGAATGAAGACC-----ATCAC----CCGGAGAAAAGCTATTTTGTTCCTGT--GTGTGCATCTATGA-------GG---------------------------------------------------------------------------------------------TTTGGAAGTGCTAG-TAGTGGTAAGATAGGACAAAGACAAGAGGTCTTATGGTGGGGTGGTACCCAGCAACATATAATCATAAGAACTCAGAATTATCATGTCCTGCATTT--TGCATTGTGT--GCATATCAATTTTGACAGTTGCTCTGCATAATTG---TCTCACAAGACTTAAATTTTACA----------CTAACTG------CAGGtgtattaatttcctactactgctgtaacaagttaccacaaacttagtggcttaa-aataactgttatgaactgaat----gtatctctccaaaattcatattttaaaaccctaatcctcagtgtgatagtatttggagatggtgcct-ttgggaggcaattaggtcat--------gagggtagagcactcctgggggaa-------------ttagtacccgtgtaaaaag-----aga-tagtgagacttcttcctctctttctacc------------atgtgaagatacaaagagaaaacagc-----cgtctgcaaacc-----agaaag---------tgggcccttat------------------------------------cagacactggac---------cctcatgaggcaccttgatcttatacttctcaggctccagaactatgaa----------aaataaacattat-----------acccaacttatggtatt---------------------------------------------cgtgttat--------------------------------------------agcagccc----------------a---------------------------------aactaagacaataacactcactta-ctctctt---------atagttctggaggttacatgt-----tttaaaccagtttcactgggttaaagtcaaggtgtcagcaggac-----------ttgttccttctggaggctctgaggaagaatctacttccttaccttttttcagcttctagtgggttcctat-attatttggcttctga-ccccttcccccatcttcaaagtgcatcattcccaactctgcttctgttagcatcacatggccttctcc----------------------ctctctctttctacctcctgcattcctct--taaggactattgtgatt--acactgggtccacagtgataatccaggataatgtcccc-catcttaagttccttaatttaatcacatctacaaagtc-----------------------------ctttttgtca--tat--aaggta--acagtcatagg----ttcgaggggttagggt-a-tggacatac-----------------ttagggaccattattaag-cctatgacaCTAGGCT-ACGGGTGTCTAGCCTAATGATGAG-GCTCTACGGAAGTGAGCAGGACTTTCCCATATGCTTAGCTCTCAAGTCCCACCAACTACACCTACATAGCTCTGAGTGTGCAAGGGGCAGAGTCTGGAACAGGCATTTTCTATCTTTATAtttcttttctttttttttttttttgagacggagtttcgctctt---------gttgcccaggctggagtgcaatggcgtgatcttggctcaccgcaacctccatcccccaggttcaagcaattctcctgcctcagcctcccgagtagctgggattacaggcatacgccaccaccctggctaattttgtatttttagtagagatggggtttctccatgttggtcaggctggtcttgaactcccgacctcaggtgatccacccgcctcggcctcccaaagtgctgggattacacgcgtaagccaccgcgtctggccTCTATCTTTATATTTCATTGC-AATAAATGATGGCATAAGA-GGAACTGTGCAGAA-AAACAAGGCATATTTGAGCCCACATGAAACTCGGGTC--AGACAGAATATTTTATAATGTAGTAAAATAACGGTAAAGTATAGGTCAGAGAC-AGGATGTAATTTTACA-----GGTGTTTTAATCACAACATCTACTAAAGAAAGAACCAAATCTTAGGAG-AAAAATGAGGTGTAGCTCTGATTACTAT s panTro2.7 27294552 1900 + 160261443 ggcgccatggctcacgtctttaattctagcactttgg-----gaggctgaggcagcaggattgcttgagtccaagagtttgagactagtctgggcaacaacacagggagacctctatatctataaaagttaaaaaattatccaggcatggtggcgcatgcacctgtggtcc-cagcttctcgggaggctgaggtgggaagatcacttgagctcaggagatgggggctgcagtgagccgtgatcgtgccactgcactccagcctgggaagcagaacaagattctgcctc------------aaaaaaaaaaaaaaaaaaaaGTTTAGTAGTTGATACTCCACTAAAATT-TCTCTTTTTCCACCATCATTTTAGTG-TATTTCTTGAGA----------------------------TACTGCTTCTAATTG--AGATTATCACTCTCCTTATACTAC-AGTGCC-TGGG-AT---------TCTTCTTTGTTTA-GCCATAGAAGTTACCAAAGCC-TTTTATGCAGCTCCTGATTGCAAAGATTCC-ACTAGTA-TTAAAT----ATCAAGCACAC-CAAAGTTTGG--TTCACAGACATGCACAAAAGAGTAAGCAAATTAATTACTTTTACTATCCTAAGAG--AACAAAGAACAAAACAAATAAATTTTC-CTTTGGTTTACCTTTGGTATCCTAG--------------CACTCTATTTTGCACG--AATCCTTCAGCACA-TCA-------CGAGTG---------AAGACA-AAGTTTGGAGCTAAG--------------AGCTG--------ATGAGACTAAATCAAAGATGTTT-T-TTCTCCCTAAGACCTTCTGTG-----------------------------------AAA------------ACAATGTTAAATTATTCTTGTTCTGAGAATGAAGACC-----ATCAC----CCGGAGAAAAGCTATTTTGTTCCTGT--GCGTGCATCTATGA-------GG---------------------------------------------------------------------------------------------TTTGGAAGTGCTAG-TGGTGGTAAGATAGGACAAAGACAAGAGGTCTTATGGTGGGGTGGTACCCAGCAACATATAATCATAAGAACTCAGAATTATCATGTCCTGCATTT--TGCATTGTGT--GCATATCAATTTTGACAGTTGCTCTGCATAATTG---TCTCACAAGACTTAAATTTTACA----------CTAACTG------CAGGtgtattaatttcctactactgctgtaacaagttaccacaaacttagtggcttaa-aataactgttatgaactgaat----gtatctctccaaaattcatattttaaaaccctaatcctcagtgtgatagtatttggagatggtgcct-ttgggaggcaattaggtcat--------gagggtagagcactcctgggggaa-------------ttagtacccgtgtaaaaag-----aga-tagtgagacttcttcctctctttctacc------------atgtgaagatacaaagagaaaacagc-----cgtctgcaaacc-----agaaag---------tgggcccttat------------------------------------cagacactggac---------cctcatgaggcaccttgatcttatacttctcaggctccagaactatgaa----------aaataaacattat-----------acccaacttatggtatt---------------------------------------------cgtgttat--------------------------------------------agcagccc----------------a---------------------------------aactaagacaataacactcactta-ctctctt---------atagttctggaggttatatgt-----tttaaaccagtttcactgggttaaagtcaaggtgtcagcaggac-----------ttgttccttctggaggctctgaggaagaatctacttccttaccttttttcagcttctagtgggttcctat-attatttggcttctga-ccccttcccccatcttcaaagtgcatcattccaaactctgcttctgttagcatcacatggccttctcc----------------------ctctctctttctacctcctgcattcctct--taaggactattgtgatt--acactgggtccacagtgataatccaggataatgtcccc-catcttaagttccttaatttaatcacatctacaaagtc-----------------------------ctttttgtca--tat--aaggta--acagtcatagg----ttcgaggggttagggt-a-tggacatat-----------------ttagggaccattattaag-cctaAGACGCTAGGCT-ACGGGTGTCTGGCCTAATGATGAG-GCTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- s rheMac2.3 97144257 2333 - 196418989 GGCACCATGGCTCACGTCTTTATTTCCAGGA--TTGGAAATAAAGGCTGAGGCAGAAGGATCATTTGAGTTCAAGAGTTTGAGACTAACCTGGGCAACAACACAGGGAGACCCCTATATCTACAAAAGCTGAAAAATTAGCCAGGCATGGTGGCGCATGCACCTGTGGTCC-CAGCTTCTCAGGAATCTGAGGTGGTAAGATCACTTGAGCTCAGGAGATGGGAGCTGCAGTGAGCCGTGATCATGCCACTGCACTCCAGCCTGGGAAACAG--TAAGACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTTAGTAGTTGATACTCTACTAAAATT-TCTCTTTTTCCACCATCATTTTAGTG-TATTTCTTGAGA----------------------------TGCTGCTTCTAATTG--AGATTATCACTCTCCTTCTACTAC-AGTGCC-TGGG-AT---------TCTTCTTTGTTTA-GTCATAGAAGTTACCAAAGCC-TTTTATGCAGCTCCTGATTGCAAAGATTCC-ACTAGTA-TTAAAT----ATCAAGCACAC-CAAAGTTTGG--TTCACAGACACGCACAAAAGAGTAAGCAAATTAATTACTTTTACTATCCTAAGAT--AACAAAGAACAAAACAAATAGATTTTC-CTTTGGTTTACCCTTGGTATCCTAG--------------CTTTCTATATTGAATG--AATCCTTCAGCACA-TCA-------CAAGTG---------AAGACA-AAGTTTGGAGCTAAG--------------AGCTG--------ATGAGATTAAATCAAAGATGTTT-T-TTCTCCCTAAGACCTTCTTTG-----------------------------------AAA------------ATAATGTTAAATTATTCTTGTTCTGAGAATGAAGACT-----ATCAC----CCGGAGAAAAGATATTTTGTTCCTGT--GTCTGCATCTATGA-------GG---------------------------------------------------------------------------------------------TTTGGAAGTGCTAG-TAGTGGTAAGATAGGACAAAGACAAGAGGTCTTATGGTGGGGTGGTACCCAGCAACATATAATTGTAAGAACTCAGAATTATCATGCCCTGCATTT--TGCATTGTAT--GCATATCAATTTTGACAGTTGCTCTGCATAATTG---TCTCACAAGACTTAAATTTTACA----------CTAACTA------CAGGTGTATTCATTTCCTACTACTGCTGTAACAAGTTACCACAAACTTAGTGGCTTAA-AATAACTGTTATGAACTGAAT----GTATCTCCCCAAAATCCATATTTTAAAACCCTAATCCTCAGTGTGATAGTATTTGGAGATGGTGCCT-TTGGGAGGCAATTAGGTCAT--------GAGGGTAGAGCTCTCCTGGGGGAA-------------TTAGTACCTGTGTAAGAAG-----AGA-TAGTGAGCCTTCTTCCTCTCTTTCTACC------------ATGTGAAGATATAAAGAGAAGACAGC-----CATCTGCACACC-----AGAAAG---------TGGGCCCTTAT------------------------------------CAGACACTGGAC---------CCTCATGAGGCACCTTGATCTTATACTTCTCAGGCTCCAGAACTATGAG----------AAGTAAACATTAT-----------ACCCAACCTATGATATT---------------------------------------------CATGTTAT--------------------------------------------AGCAGCCC----------------A-------------------------------------AAGACAATAATATACACTTA-CTCTCTT---------ATAGTTCTGGAGGTTATATGT-----TTTAAACCAGTTTCACTGGGGTAAAGTCAAGGTGTCAGCAGGAC-----------TTGTTCCTTCTGGAGGCTCCGAGGAAGAATCTACTTCCTCATATTTTTTCAGCTTCTAGTGGGTTCCTGT-ATTATTTGGCTTCTGG-CCCCTTCCCCCATCTTCAAAGTGCATCATTCCAACCTCTGCTTCTGTTAGCATCATATGGCCTTCTCC----------------------CTCTCTCTTTCTACCTTCTGCATCCCTCT--TAAGGACTATTGTGATT--ACACTGGGTCCACAGTGATAATCCAGGATAATGTCCCC-CATCTTAAGTTCCTTAATTTAATTACATCTACAAAGTC-----------------------------CCTTTTATCA--TAT--AAGGTA--ACAGTCATAGG----TTCGAGGGGTTAGGGT-A-TGGACATAT-----------------TTGGGGACCATTATTCAG-CCTATGACACTAGGCT-AGGGGTGTCTGGCCTAATCATGAG-GCTCTGTGGAAGTGAGCAGGACTTTCCCATATGCTTAGCTCTCAAGTCCTATCAATCACACCTACATAGCTCTGAGTGTGCAAGGGGCAGAGTCTGGAACAGGCATTTTCTATCTTTATATTTCT----TTTTTTTTTTTTTTTGAGACAAAGTTTCACTCTTGTTGCCCAGGTTGCCCAGGTTGGAGTGAAATGGCATGATCTTGGCTCACCACAACCTCTGTCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGGATATGCCACCACCCCGGCTAATTTTGTATTTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTTGAACTCCCAACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCTGGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- # synteny group 0 a score=-141.0 s hg18.7 26960899 80 + 158821424 caggcgtgagccaccatgcctggtcAGGTCTgattatttcaaggattaa---atgaa-accaattatgtaa-g-cactaagtatag s panTro2.unknown 0 0 + 0 -------------------------------------------------------------------------------------- s rheMac2.3 97146591 55 - 196418989 -------------------------AGGTCTGATTATTTTAAGGATTAA---ATGAG-ACCAATTATGTAA-G-CACTAAGTATAG a score=1286.6 s hg18.7 26960979 1057 + 158821424 tgcc-taattaacacttggtaa------atgcta--------aaaaaagttaattattatGATTTCTTCCAACACTC-----------------------------------------------------------------------------TGACAT--------TTAAAAAAA---TTTTCTTTCTCTTCGATTGCAAT--GATGAAT--CT---ACATATAGTTCATTCCTTGTCAGAAAAGC---ACTTGCATTTCTA--TCC--C---------CAAAGAGGGTGCTGACA--CT---------GAGCTAAAG--GAAATCTCAGAAGACAAC---CTCTCC--------------------CAGCAGACCACCAGCACGATCTTTGACATGC-TTTT-CTTTCCAAAGATGA-CCTC-TTTTTCCTGGGTTAAAGTTGAGTATCCGGGCATTAACTGCTACTTGGAAAAGTGCTGAGTGGCTGATGTATGCTGTCAGCA-TTATTC-GAGGCCAGC-CGGGGA---ATGTCTACATGGCCCATTCCTTTCCATTTG-CATTTGGCAAAGACTT-AAATTGTGACACTTAGGAAGGTGGAAAGTAA------TGAAAATGCA------TGGTTCTTTCCA-----GTCATATCATACACACTCTTAATATTCCATC-TTCCCAAT-AGTGTGTTGAAC-TAGTAGAAACAACAATGAAAATGAC----------------------AGAAAccaggcatggtaagctcaagcctgtaatcccagcacttcgggaagttgaggtagaagaatagcataccccaggaccctgtctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaaaattcagctgggtgtggtagcgtgtgcctgtagtcccagctacttgggaggctaaggtggaaggatcatttgaggtggagactgc-aaactgtgattgtgccattgtactccaacctgtgtgacagagtgagacccCACCTAAGACAGACAGACAGAAaaagcaatggaaaggaaaggaaaggaaaggaaaggaaag---gaaaggaaaggaaaggaaaggaaagg---aaaggaa-aggGTGAAACCATCA----TCTGAAGGAAAGTCTAGTCATTGCAGACAAATTTAAGAATTAGTCTGTCTGTTCCCTATTCTCCCACTAAACGATC-TGTAGAAAGTTAAATAGCACCTTTTCCCCATCTGT---AAAAAA-AAGAGTAGTCACAATTATTA---AATAAAAATGGCA s panTro2.7 27297334 1014 + 160261443 TGCC-TAATTTACCCTTATTAA------ATGCTA--------AAAAAAGTTAATTATTATGTTTCCTTCCAACACTC-----------------------------------------------------------------------------TGACAT--------TTAAAAAAAA--TTTTCTTTCTCTTAGATTGCAAT--GATGAAT--CT---ACATATAGTTCATTCCTTGTCAGAAAAGC---ACTTGCATTTCTA--TCC--C---------CAAAGAGGGTGCTGACA--CT---------GGGCTAAAG--GAAATCTCAGAAGACAAC---CTCTCC--------------------CAGCAGACCACCAGCACGATCTTTGACATGC-TTTT-CTTTCCAAAGATGA-CCTC-TTTTTCCTGGGTTAAAGTTGAGTATCCGGGCATTAACTGCTACTTGGAAAAGTGCTGAGTGGCTGATGTATGCTGTCAGCA-TTATTC-GAGGCCAGC-CGGGGA---ATGTCTACATGGCCCATTCCTTTCCATTTG-CATTTGGCAAAGACTT-AAATTGTGACACTTAGGAAGGTGGAAAGTAA------TGAAAATGCA------TGGTTCTTTCCA-----GTCATATCATACACACACTTAATATTCCATC-TTCCCAAT-AGTGTGTTGAAC-TAGTAGAAACAACAATGAAAATGAC----------------------AGAAAccaggcatggtaagctcaagcctgtaatcccagcacttcgggaagttgaggtacaagaatagcataccccaggaccctgtctctaaaaaaaaaaaaaaaaaaaaaaaaaaaaa----ttaaaattcagctgggtgtggtagcgtgtgcctgtagtcccagctacttgggaggctaaggtggaaggatcatttgaggtggagactgc-aaactgtgattgtgccattgtactccaacctgtgtgacagaatgagacccCACCTAAGACAGACAGACAGAAaaagcaatggaatggaaaggaaaggaaaggaaagg-----------------------------------------------GTGAAACCATCA----TCTGAAGGAAAGTCTAGTCATTGCAGACAAATTTAAGAATTAGTCTGTCTGTTCCCTATTCTCCCACTAAACGATC-TGTAGAAAGTTAAATAGCACCTTTTCCCCATCTGT---AAAAAA-AAGAGTAGTCACAATTATTA---AATAAAAATGGCA s rheMac2.3 97146646 492 - 196418989 TGCC-TAATCAACACTTAGTAA------ATGCTC--------AGAAAAGTTAATTATTAAGATTTATTCCA--ATTC-----------------------------------------------------------------------------TGACAT--------TTAAAAAAA---TTTTCTTTCTCTTAGATTGCAAT--GATGAAT--CT---ACATATAGTTCATTCCTTGTCAGAAAAGC---ACTTGCATTTCTA--TCC--C---------CAAAGAGGGTGCTGACA--TT---------GGGCTAAAG--GAAATCTCAGAAGACAAC---CTCTCC--------------------CAGCAGACTATCAGCACGATCTTTGACATGC-TTTT-CTTTCCAAAGATGA-CCTC-TTTTTCCTGGGTTAAAGTTGAGTATCCGGGCATTAACTGCTACTTGGAAAAGTGCTGAGTGGCTGATGTATGCTGTCAGCA-TTATTC-GAGGCCAGC-CAGGGA---ATGTCTACATGGCTCCTTCCTTTCCATTTG-CATTTGGCAAAGACTT-ACATTGTGACACTTAGGAAGGTGGGAAGTAA------TGAAAACGCA------TGGTTCTTTCCA-----GCCATATCATACATGCACTTATTATTCCATC-TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=3357.2 s hg18.7 26962036 3863 + 158821424 TAAAA--TATGCATCTATATCAACAAACA-GGTAAATAATAAACGATTTACTTTAAGGAGT-----CTTTG---GTCTGAC-CTGACACAATTTAT---GTTCATCACTGGGCTTGATAGACTTGACTTTCTCCTTCTTCCCTCCCCATTATGAACCCCAAAAAGTCTCTTGTCC----tt--------tttttttttttttttagacagggtctcgctttgttacctaggctggaatgtagtggtgcaattatggctcaccgaagccctgaactcctgggctcacatgatcctcccacctcagcctcctgagtagctaggactatagacacatgccaccatgcccagctaatttttttttcttttggtacagacaaagtcttactgtgttgcacagactggtcttgaacacctggctttaagTCTTTTGTCCTTATTAACAACAGTCATTTGTTAAAATCTTGTGAAAGGTCT-gtgcagtggctcgtgcctgtaatcccagcactcggggaagtcaagggagaaggatagcttgagaacaggagtttgaaaccagcctcagcaacatagtgagaccctgtctctacagaaacttaaaaaaatcagcctggcatggcagtgtgcatctgtagtcccagctactcaaaaggctgagggtagcttgatcccaagagttcacggttgcagcgagccatgatcattccagcctgggtgacagagcaagaccagtctttg--gaaaaaaacaaaaaCGTTGTGACA-TTTTCCAGCAAAGGCAGGAAGAGG----CAACCACCTCT-CAAGTT-AGAATCATCTATTGCACTTGTTCTTCTAAAATCCTTTTCTCTTCTCTCAGAAGTCATTTTTATTTCCTTATCACTCTGGCAGCCAAGTCC---TTTTGGTAACTCTGGTTAGTCTCCGG-GGCATTACTTCTCTCTC---TTGCTTTCTATGCTATTTGTTTCTTATCTGAGA--TACAATATAGGCAGAATGAGG------TGTTT-GGGT----TTT---------------------------TTAA-AAACCCCAAAGTAACATGCTTCTAAAGTATTTGACAAATAAGACT-AGCCTTGTTAAAATGTTTTTCTCCTC-TGACTAGTATTGAGGAAAA----CATATAAGTACACA-CATCTTAACAAGCAGTAATTATAGAGT---AGATCAAAAATC----TA-AAACTTG-GTC-TTCTTAGTGAAAA----TAAT---------GATTCCCTATTATCT-GAACAACTACCACTTGC----AGATGATCGATAC--------AAATATTCTAAT----TAAGGGTTAGATGAATGAAGATAG----CTACAGAGCTAAGAAAAAG-----ATGGG-GAC------------ATCAGGTCAT-A---------AAAATACTAAAGAATTTTCAAGGTGAGGATTAGTGTTCCCTCTTCAAGATTGT-------------------CAA-TCAGTGGAGGTTTGGGGCAAGGTAAACCACCTCTGC-ATAA---ATTATCCTTTCAGAGACT----GATTATCTTATTAAATAGATA--------AACCCAAACTCAGACAGAAAAGGATTAATCATAAGCAGGGGAGATTcatacatgcat------acatattatatatgcatacacacatacatattatatatgcatacacacatgcatattatatatgcatacaca--tacatctattacatgcatacacacatacatctattacatacatacacacatacatctat-------------------attacatgcataca--cacaCATCTAT------------------TACATAT-----------GTGTACACACATAT--GTTATATGTGC------ACGCACACATATGTtatatgtgtgtacacatacatatatgt---atgtgtgtacac--atacatatatgtcatatgtgtg--tacacatacatatatgtcatatgtgtggacaca--tacatatatgtcatatgtgtggacacatacatatat-----gttatatgtgtcgacaca--tacatatatgctat---atatgtggacaca--tacatatTTCA------------T--ATATATGAAAATGTCAAAGTTCAGAGTATAA---GGAGGGAA------AATTA--ATAAATA--ACAAATTTAGAAGGAAAAGGTAAGC----AGGACA--ATATTTATTA------TGCCAGTT-------T-AAAGACTAAAACCTATTAATAAATTTCCTGCCCAAGTCTTCAAAATTGTTCTCACTCTCCTTCAATCTTCCAGCCTCAGACAATGAGATTATATATACACATACAATCATCCACTGAGACAATTGGG-TTACATATACCAGTTTTATACTTCCTCTAGGGCTTTCTAGCATTGCTTGAAATCTAATAGGAACGGAATATTATGAA--GGAAAATGAGTCTGTACAGTCCACTTCAGACTTAATTTCATGCAATGTATTTAAAATACTCCTATAAT----T---TACTTGAATACCTATGCCCACTATATAATAAA--GAGAATGAGTAGTATGTATCAATAAAGAAA-C-AGAAAAG---GAATTGGTGC-CCCCAGCCCTGACCCCTAGTGGAGTCAACAAACTGCATGGCAAATTATTAC-------TATTTCTCCACCCCTGCATGGTCAATCTCACATTGAATAAATTTTCTCTAA-TATATATTACAAAACATCAGGCATATCAAC-----------------CTGGTTTCTTAAATAAAATTGGCACCATAGCCTATAGAAT--------------------------------------------GTAGCCTG----------------------------------------------------ATATTCAAGGTCAGCTCCACA-------------CACC-CC--------CATACATAGTC---------------------------CCA--------------A---TCTTTTCCTACCATATCTCTCAGCAC-TT-----------------------------------------------GCTTATAAAAACTCTCCA--CTCCAGCCAGCCTAGTATACTCCCCATTCCC-CTGCATATTCTCATTTCTCTTATATCAGGCCATCTGGAAAG-TAAATGGAAT------GTCATCCCCAATAAaacaatttgaacaa----caaag-----taaaatacta--ttggcttataacc---aaa--aaaaaaaaaaaatc--tgagtccatactgatataaataaatgattaaataaacaaataaaagaacagactaatctcccaattagaataattcccaataatttatg-taaatactccatcctcaaagaagt-aaacata----attacccattctttaagtgtgagctgca------------------------------ca-----------cagtgacttactttgaaagagtacagtattaa------aaagggggaaaagacagtaacttcacagtag----agaaacctaatgaacactacctcaactggatgat---gactatcatctacagtgattagtcattttgatattatgtactc--gatataatatgataaaaat------------------agtac--------ttaacctgtgtTAAGTCAATAAtactattgaccctctgacaatatgtcagaaggaggatcatctgctttgggcgatcctgattcatcaagccatgatgatgctgatggctggatgtcaaggagcaaaggacatcaatgactaacaggcgagtagcttctacagcgtggatacactggacaaagggatgattcacatcctgggcaagatggagctggaaggaatgagatttcaccctgctactcag-atcagcgtgagatttaaaacttaacaaattgtttatttctggtattttctattcaatatcttagaactgtgattgactgtgggtaacggaaactgcagaaagcaaaagtgtgactaag-------gcgactactgTATTTGAaatagaggaaactggttatatgagtgattaaaaggata-aaacgcaaattgagg-----------cagcct-gcgataagcaaaagcagaaagccagtgcaatgccaccccctaatctggaaggccaagagaagaggcag--tgttactggagcctggagagtggcat-cact-----tcat-agaagccagaaccacaggcagagtctaga---------ggagccacag-------------acttcttaagagt------tgttgcctaaggcag-agagggattgagagaaatacaagggcttcttc---------------------cttcctcttgacttttagccta-ccacttccaTTCAAAAACC----------------AAG----AGTATCTACTGTCCTGTAACACAGGCCAAGCAGAGAAAAGGTGGGGAATGAATCT-AT-TCAGTCAGGTCTACACAATAAGCTACCACTTTAGG-------------------------------ACTATTTCTAGCTTGATGTACAGTTAGGTCTGGGCA-GAGCCAGCAGA-T s panTro2.7 27298348 3930 + 160261443 TAAAA--TATGCATCTATATCAACAAACA-GGTAAATAATAAACGATTTATTTTAAGGAGT-----CTTTG---GTCTGAC-CTGACACAATTTAT---GATCATCACTGGGCTTGATGGACTTGACTTTCTCCTTCTTCCCTCCCCATTATGAACCCCAAAAAGTCTCTTGTCC----tt--------ttttttttttttttcagacagggtctcgctttgttacctgggctggaatgtagtggtgcaattatggctcaccgaagccctgaactcctgggctcacgtgatcctcccacctcagcctcctgagtagctaggactatagacacatgccaccacgcccagctaatttttttttcttttggtacagacaaagtcttactatgttgcacagactggtcttgaacacctggctttaagTCTTTTGTCCTTATTAACAACAGTCATTTGTTAAAATCTTGTGAAAGGTCT-gtgcagtggctcgtgcctgtaatcccagcactcggggaagtcaagggagaaggatagcttgagaacaggagtttgaaaccagcctcggcaacatagtgagaccctgtctctacagaaacttaaaaaaatcagcctggcatggcagtgtgcatctgtagtcccagctactcaaaaggctgagggtagcttgatcccaagagttcacggttgcagcgagccatgatcattccagcctgggtgacagagcaagaccAGTCTTTG--GGAAAAAACAAAAACGTTGTGACA-TTTTCCAGCAAAGGCAGGAAGAGG----CAACCACCTCT-CAAGTT-AGAATCATCTATTGCACTTGTTCTTCTAAAATCCTTTTCTCTTCTCTCAGAAGTCATTTTTATTTCCTTATCACTCTGGCAGCCAAGTCC---TTTTGGTAACTCTGGTTAGTCTCCGG-GGCATTACTTCTCTCTC---TTGCTTTCTATGCTATTTGTTTCTTATCTGAGA--TACAATATAGGCAGAATGAGG------TGTTT-GGGT----TTT---------------------------TTTTTAAACCCCAATGTAACATGCTTCTAAAGTATTTGACAAATGAGACT-AGCCTTGTTAAAATGTTTTTCTCCTC-TGACTAGTATTGAGGAAAA----CATATAAGTACACA-CATCTTAACAAGCAGTAATTATAGAGT---AGATCAAAAATC----TA-AAACTTG-GTC-TTCTTAGTGAAAA----TAAT---------GATTCCCTATTATCT-GAACAACTACCACTTGC----AGATGATCGATAC--------AAATATTCTAAT----TAAGGGTTAGATGAA----GATAG----CTACAGAGCTAAGAAAAAG-----ATGGG-GAC------------ATCAGGTCAT-A---------AAAATACTAAAGAATTTTCAAGGTGAGGATTAGTGTTCCCTCTTCAAGATTGT-------------------CAA-TCAGTGGAGGTTTGGGGCAAGGTAAACCACCTCTGC-ATAA---ATTATCCTTTCAGAGACT----GATTATCTTATTAAATAGATT--------AACCCAAACTCAGACAGAAAAGGATTAATCATAAGCAGGGGAGATTcatacacgcat------acatattatatatgcatacacacatacatattatatatgcatacacaaatacatattatatatgcatacacacatacatctattacatgcatacacacatacatctattacatgcatacacacatacatctattacatgcatacacacatacattacatacatacatacacacatctatattacatgcatacacacatacatatatgttatatgtgtgtacacacatatatgttatatgtgccgacacacatacatatatgttatat-tgtgtgcacacacatatatgttatatgtgtggacacgcatacatatatgttatatgtgtggacacacatacatatatgttatatgtgtggacacacatacatatatgttatatgtgtcgacacatacatatat-----gttatatatgtcgacacacatacatatatgctat---atatgtggacacacatacatatttca------------t--atatatGAAAATGTTGAAGTTCAGAGTATAA---GGAGGGAA------AATTA--ATAAATA--ACAAATTTAGAAGGAAAAGGTAAGC----AAGACA--ATATTTATTA------TGCCAGTT-------T-AAAGACTAAAACCTATTAATAAATTTCCTGCCCAAGTCTTCAAAATTGTTCTCACTCTCCTTCAATCTTCCAGCCTCAGACAATGAGATTATATATACACATACAATCATCCACTGAGACAATTGGG-TTACATATACCATTTTTATACTTCCTCTAGGGCTTTCTAGCATTGCTTGAAATCTAATAGGAACGGAATATTATGAA--GGAAAATGAGTCTGTACAGTCCACTTCAGACTTAATTTCATGCGATGTATTTAAAATACTCCTATAAT----T---TACTTGAATACCTATGCCCACTATATAATAAA--GAGAATGAGTAGTATGTATCAATAAAGAAA-C-AGAAAAG---GAATTGGTGC-CCCCAGCCCTGACCCCTAGTGGAGTCAACAAACTGCATGGCAAATCATTAC-------TATTTCTCCACCCCTGCATGGTCAATCTCACATTGAATAAATTTTCTCTAA-TATATATTACAAAACATCAGGCATATCAAC-----------------CTGGTTTCTTAAATAAAATTGGCACCATAGCCTATAGAAT--------------------------------------------GTAGCCTG----------------------------------------------------ATATTCAAGGTCAGCTCCACA-------------CACC-CC--------CATACATAGTC---------------------------CCA--------------A---TCTTTTCCTACCATATGTCTCAGCAC-TT-----------------------------------------------GCTTATAAAAACTCTCCA--CTCCAGCCAGCCTAGTATACTCCCCATTCCC-CTGCATATTCTCATTTCTCTTATATCAGGCCATCTGGAAAG-TAAATGGAAT------GTCATCCCCAATAAaacaatttgaacaa----caaaa-----taaaatacta--ttggcttataaccaa-aaa--aaaaaaaaaaaatc--tgagtccatactgat----ataaatgattaaataaacaaataaaagaacagactaatctcccaattagaataattcccaataatttatg-taaatactccatcctcaaagaagt-aaacata----attacccattctttaagtgtgagctgca------------------------------ca-----------cagtgacttactttgaaagagtatagtattaa------aaagggggaaaagacagtaacttcacagtag----agaaacctaatgaacactacctcaactggatgat---gactatcatctacagtgattagtcattttgatattatgtactc--aatataatatgataaaaat------------------agtac--------ttaacctgtgtTAAGTCAATAAtactattgaccctctgacaatatgtcagaaggaggatcatctgctttgggcgatcctgattcatcaagccatgatgatgctgatggctggatgtcaaggagcaaaggacatcaatgactaacaggcgagtagcttctacagcgtggatacactggacaaagggatgattcacatcctgggcaagatggagctggaaggaatgagatttcaccctgctactcag-atcagcgtgagatttaaaacttaacaaattgtttatttctggtattttctattcaatatcttagaactgtgattgactgtgggtaacggaaactgcagaaagcaaaagtgtgactaag-------gcgactactgTATTTGAaatagaggaaactggttatatgagtgattaaaaggata-aaacgcaaattgagg-----------cagcct-gcgataagcaaaagcagaaagccagtgcaatgccaccccctaatctggaaggccaagagaagaggcag--tgttactggagcctggagagtggcat-cact-----tcat-agaagccagaaccacaggcagagtctaga---------ggagccacag-------------acttcttaagagt------tgttgcctaaggcag-agagggattgagagaaatacaagggcttcttc---------------------cttcctcttgacttttagccta-ccacttccaTTCAAAAACC----------------AAG----AGTATCTACTGTCCTGTAACACAGGCCAAGCAGAGAAAAGGTGGGGAATGAATCT-AT-TCAGTCAGGTCTACACAATAAGCTACCACTTTAGG-------------------------------ACTATTTCTAGCTTGATGTACAGTTAGGTCTGGGCA-GAGCCAGCAGA-T s rheMac2.3 97147948 3579 - 196418989 TAAAA--TATGCATCGATATCAACAAACA-GGTAAATAATAAATGATTTACTTTAAGGAGT-----CTTTG---CTCTGAC-CTGACACAATTTAT---GTTTATCACTGGGCTTGATGGACTTGACTTTCTCCTTCTTCCCTCCCCATTATGAACCCCAAAAAATCTCTTGTCCTTTTTT--------TTTTTTTTTTTTTTTAGACAGGGTCTTGCTTTGTTACCTAGGCTGGAATGTAGTGGTGCAGTTATTGCTCACTGCAGCCTCGAACTCCTGGGCTCACGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTAGGACTACAGACATGTGCCACCATGCCCAGCTAATTTTTTTTTTCTTTTGT---TACAAAGTCTTACTATGTTGCACACACTGGTCTCCAACACCTGGCTTCAAGTCTTTTGTCCTTATTATCAATAGTCATTTGTTAAAATCTTGTGAAAGGTCTGGTGCAGTGGCTCCTGTCCGTAATCCCAGCACTTGGGGAAGTCAAGGCAGAAGGATAGCTTGAGAACAGGAGTTTGAAACCAGCCTGGGCAACACAGTGAGACCCAATCTCTACAAAAACTTTAAAAAATCAGCCTGGTATGGCAGTGTGCATCTGTAGTCCCAGCTACTCAAAAGGCTGAGGATAGCTTGATCGCAAGAGTTCATGGCTGCAGCGAGCTATGATCACTCCAGCCTGGGTGACAGGGCGAGACCAGTCTTTGACAAAAAAAAAAAAAAAGTTGTGACA-TTTTCCAGCAAAGGCAGAAAGAGG----CAACCGCCTCT-CGAGTT-AGAATCATCTATTGCACTTGTTCTTCTAAAATCCTTTTATCTTCTCTCAGAAGTCATTTCTATTTCCCTATCACTCTGGCAGCCAAGTTC---TTTTGGTAACTCTGGTTAACCTCCAG-GGCATTACTTCTCTCTC---TTGCTTTCAATGCTATTTGTTTCTTATGTGAGA--TACAATATAGGCAGAATGAGG------TGTTT-GGTT----TTT---------------------------TTTA-AAACCCCAGTGTAACATGCTCCTAACGTATTTGACAAATGAGACT-AGCCTTGTTAAAATGTTTTTCTCCTC-TGACTAGCATTGAGGAAAA----TATGTAAGTACACA-CATCTTAACAAGCAGTAATTATAGAGT---AGATC-AAAATC----TA-AAACTTG-TTC-TTCTTAGTGAAAA----TAAT---------GATTCCCTATTATCT-GAACAACTACCACTTGC----AGATGATCAATAC--------AAATATTCTGAT----TAAGGGTTAGATGAA----GATAG----ATACAGAACTAAGAAAAAG-----ATGGG-GAC------------ATCAGGTCAT-A---------AAAATACTAAAGAATTTTCAAGGTGAGGATTAGTGTTCCCTCTTTAAGATTAT-------------------CAA-TCAGTGGAGGTTTGGGGCAAGGTAAACCACCTCAGC-ATAAATTATTATCCTTTCAGAGACT----GATTATCCTATTAAATAGATT--------AACCCAAACTCAGACAGAAAAGGATTAATCATAAGTGGGGGAGATTAATATATACAT------ATATATTACAGATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATACACACA--TACATATTTCA------------TAAATATATGAAAATGTCAAAGTTCAGAGTATAA---GAAGGGAA------AATTA--ATAAATA--ACAAATTTAGAAGGAAAAGGTAAAC----AGGACA--ATATTTATTA------TGCCAGTT-------T-AAAGACTAAAACCTATTAAT--ATTTCCTGCCCAAGGCTTCAAAATTGTTCTCACTCTCTTGCAATCTTCCAACCTCAGACAATGAGATTATACATACACATACAATCATCCACTGAGACAATTGGG-TTATATATACCATTTTTATACTTCCTCTAGGGCTTCCTAGCATTGCTTGAAATCTAATAGGAACAGAATATTATGAA--GGAAAATGAGTCTGTACAGTCTACTTCAGACTTAATTTCATGCAATGTATTTAAAATACTCCTATAAT----T---TACTTGAATACCTGTGCCCACTATATAATAAA--GAGAATGAGTAGTATGTATCAATAAGGAAA-C-AGAAAAG---GAATTGGTGC-CCTCAGCCCTAACCCCTAGTGGAGTCAACAAACTGCATGGTAAATCATTAC-------TATTTCTCTGCCCCTGCATGGTCAATCTCACATTGAATAAATTTTCTCTAA-TATATATTACAAAACATCAGGCATATCAAC-----------------CTGGTTTCTTAAATAAAATTGGCACCACAGCCTATAGAAT--------------------------------------------GTAGCCTG----------------------------------------------------ATATTCAAGGTCAGCCCCGCA-------------CACC-CC--------CATACACAGTG---------------------------CCA--------------A---TCTTTTCCTACCATATCTCTCAGCAC-TTGCTTACAAAAAAGTCCCAATCTTTTCCTACCATATCTCTCAGCACGCGCTTACAAAAACTCTCCA--CTCCAGCCAGCCTCGTATACTCCCCATTCCC-CTGCATATTCTCATTTCTCTTATATCAGGTCATCTGGAAAG-TAAATGGAAT------GTCATCCCCAATAAAACAATTTGAACAA----CAAAA-----TAAAATACTA--TTCGCTTATAACCAA-AAAATAAAAAATAAAAATCTGTGAGCCCGTACTGATATAAATAAATGATTAAATAAAC----AAAAGAACAGACTAATCTCTCAATTAGAATAATTCCCAATAATTTATG-TAAATACTCCATCCTCAAAGAAGT-AAACATA----ATTCCCCATTCTTTAAGTGTGAGCTGCA------------------------------CA-----------CAGTGAATTACTTTGAAAGAGTACAGTATTAA------AAAGGGGGAAAAGGCAGTAACTTCACAGTAC----AGAAATCTAATGAAC---ACCTCAACTGGATGAT---GACTATCATCTACAGTGATTAGTCATTTTGATATTATGTACTCTTGATATAATATGATAAAAATAGCACTTAACCTGTGTTAAGTAC--------TTAACCTGTGTTAAGTCAATAATACTATTGACCCTCTGACAATATGTCAGAAGGAGGATCATCCGCTTTGGGTGATCCTGATTCATCAAGCCATGATGATGCTGATGGCTGGATGTCAAGGAGCAAAGGACATCAATGACTACCAGGCAAGCAGCATCTATAGTGTGGATATGCTGGACAAAGGGGTGATTCACATCCTGGGCAGGATGGAGCTGGATGGAATGAGATTTCATCCTGCTACTAAG-ATCACCGTGAGATTTAAAACTT-ACAAATTGTTTATTTCCGGTATTTTCTACTCAGTATCTTAGAACTGTGATTGACTGTGGGTAACTGAAACTGCAGAAAACAAAAGTGTGACTAAG-------ATGACTACTGTATTTGAAATAGAGGAAACTGGTTATATGAATAATTAAAGGGCTA-AAATGCAAATTGAGG-----------CAGCCT-GCGATAAGCAAAAGCAGAAAGCCACTGCAATGCCATCCCCTAATCTGGAAGGCCAAAAGAAGAGGCAG--TGTTACTGGAGCCTGGAGAGTGGCAA-CACT-----TCAC-AGAAGCCAGAACCACAGGCAGAGTCTAGA---------GGAGCCACAG-------------GCTTCTTAAGAGT------TGTTACCTAAGGCAG-AGAGGGATTGAGAGAAATATAAGGGCTTCTTC---------------------CTTCCTCTTGACTTTTAGCCTC-CCACTTCCACTCAAAAGCC----------------AAG----AGTGTCTACTGTCCTGTAACACAGGCCAAGCAGAGAAAAGGTGGGGAATGAATCT-AG-TCAATCAGGTCTACACAATAAGCTACCACTTTAGG-------------------------------ATTATTTCTAGCTTGATGTACAGTTAGGTCTGGGCA-AAGCCAGCAGC-T a score=1958.0 s hg18.7 26965899 874 + 158821424 TGATTAGT-TCTTTTTATTT-----------GGAATTTT--------------------------------------------------------------------------------------CAAAATG-----TTTTT-TATAAGCACTTTCT--------------------GTGGTGAACAT-GAATGCtcattcccatcttataaatggaaggttgaaatagggagagctgtttgtatgaaatctcaaag---gtcagtgacagagc--tgggGAAA-GGATGAGTATTTGTTTAAGTTGCAGCA----TTATTTTC----TG-TTGTTTCAT-----------------TTTTTTTCTCCA----TTTT----AATTA-------TG---CACAGGGTCACTGAAAGAGTTGAAACTAAAACTG-GAAGCATAG---------TACCTTGTC-----CAATTAAA-CTA--------CCAAACTT--AGCTTTG---GAATAGAGTGGTTTGATTGTTTCCT-ATAAGGCCAAGATTTGC-------TCTGAACAAAGCTATAGGTCCA--------------------------------CACATTCTAACA--------------------------AAGAAAACAAATAAAAAATACAA---ACAGAGTAGTTAACATTTTATAGTTTC-TGCTAATGTTATG-TTACTTT-----------GGAGGCA---GGCAGCC------CA-----GACTCAAATG----------------AAAACATACCA--GAGTAGGAAAGT----------AG----------AAAAAAGA-AACAAACATTTAAC---AA-TTTTAAGAATATGCCTTATCTTTTTGAGAGTCTTATGC------------------CATCTT------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATA-TTACCAAAAGGCCCCTAG-AAATTGAGTAGACCCAAGGAAACA----CCACAGCCTCTCACTCTATGTCTT----GTG-TTCTGGG-TCAATTAGATTCTGCTTGTTTCTGTGATACTCTGAG--AATCCAG----AGT----AT----CTTTAATTTGGGTTGAAAC-AGCAGATATCAGACTACTATTCTTATCTGCAGCCACCCTGCTTTCTGATCTCCTTGAGACCCAGGGCAGCGAGACCCAGAGCAGCAAACACAGGGGAATGTGATTGTCTTCAAGGACATTGGGACATTGTAAAT----TCATGGTAGAGCTTTG--A s panTro2.7 27302278 876 + 160261443 TGATTAGT-TCTTTTTATTT-----------GGAATTTT--------------------------------------------------------------------------------------CAAAATG-----TTTTT-TATAAGCACTTTCT--------------------GTGGTGAACAT-GAATGCTCATTCCCATCTTATAAATGGAAGGTTGAAATAGGGAGAGCTGTTTGTATGAAATCTCAAAG---GTCAGTGACAGAGC--TGGCGAAA-GGATGAG----TGTTTAAGTTGCAGCA----TTATTTTC----TG-TTGTTTCAT-----------------TTTTTTTCTCCA----TTTT----AATTA-------TG---CACAGGGTCACTGAAAGAGTTGAAACTAAAACTG-GAAGCATAG---------TACCTTGTC-----CAATTAAA-CTA--------CCAAACTT--AGCTTTG---GAATAGAGTGGTTTGATTGTTTCCT-ATAAGGCCAAGATTTGC-------TCTGAACAAAGCTATAGGTCCA--------------------------------CACATTCTAACG--------------------------AAGAAAACAAATAAAAAATACAA---ACAGAGTAGTTAACATTTTATAGTTTC-TGCTAATGTTATG-TTACTTT-----------GGAGGCA---GGCAGCC------CA-----GACTCAAATG----------------AAAACATACCA--GAGTAGGCAAGT----------AG----------AAAAAAGA-AACAAACATTTAAC---AA-TTTTAAGAATATGCCTTATCTTTTTGAGAGTCTTATGC------------------CATCTT------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATA-TTACCAAAAGGCCCCTAG-AAATTGAGTAGACCCAAGGAAACA----CCACAGCCTCTCACTCTATGTCTT----GTG-TTCTGGG-TCAATTAGATTCTGCTTGTTTCTGTGATACTCTGAG--AATCTAG--GAAGTTTAGAA----CTTTAATTTGGGTTGAAAC-AGCAGATATCAGACTACTATTCTTATCTGCAGCCACCCTGCTTCCTGATCTCCTTGAGACCCAGGGCAGTGAGACCCAGAGCAGCAAACACAGGGGAATGTGATTGTCTTCAAGGACATTGGGACATTGTAAAT----TCATGGTAGAGCTTTG--A s rheMac2.3 97151744 961 - 196418989 TGGCTAAC-TTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTTGATCTCCTGACCTCATGATCGGCTCACCTTAGCCTCCCAAAGTGCCGGGATTACAGGCATGAGCAAAATG-----TTTTT-TATAAGGACTTTCT--------------------GTGGTGAACAT-GAATGCTCATTCCCATCTTATAAATGGAAGGTTGAAATAGGGAGAGCTGTTTGTATGAAATCTCAAAG---GTCAGTGACAGAGC--TGGGGAAA-GGATGAGTATTTGTTTAATCTGC-GCA----TTATTTTC----TG-TTGTTTCAT-----------------TTTTTTTCTCCA----TTTT----AATTA-------TG---CACAGGGTCACTGAAAGAGTTGAAACTAAAACTG-GAAGCATAG---------TACCTTGTC-----CAATTAAA-CTA--------CCAAACTT--AGCTTTG---GAATGGAGTGGTTTGATTGTTTCCT-ATAAGGCCAAGATTTGC-------TCTGAGCAAAGCTATAGGTGCA--------------------------------CACATTCTAACA--------------------------AAGAAAACAAATAAAAAATACAA---ACAGAAGAGTTAACATTTTATAGTTTC-TGCTAATGTTGTG-TTACTTT-----------GGAGGCA---GGCAGCC------CA-----GACTCAAATG----------------AAAACATACCA--GAGTAGGCAAGT----------AG----------AAAAAAGA-AACAAACATTTAAC---AA-TTTTAAGAATATGCCTTATCTTTTTGAAAGTCTTATGC------------------CATCTT------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATA-TTACCTAAAGGCCCCTAG--AATTGAGTAGACCCAAGGAAACA----CCACAGCCTCTCACTCTATGTGTT----GTGTTTCTGGG-TCAATTAGATTCTGCTTGTTTCTGTGATACTCTGAG--AATCCAG--GAAGTTTAGAA----GTTTAGTTTGGGTTGAAAC-AGCAGATATCAGACTACTGTTCTTATCTGCAGCCACCCTGCTTTCTGATCTCCTTGAGACCCAGGGCAGCAAG--------------ACACAGGGGAATGTGATTGT-TCCAAGGATATTGGGACACTGTAAAT----TCATGGTAGAGCTTTG--A a score=1044.6 s hg18.7 26966773 5478 + 158821424 AAAGCTATTAAATTCCTAGGGTGCTAAACCAGGAGGTAGGGAGTAACAGTGGTG-GTAACAAGA--ATAACTCTTAGGAAGATAGGGAGCATGTTTT--ACGCTTCCAAAATGCTCTTCTTGAGGCAATATGTATC--------------------------------------------------------------------TATGTCTGAAAGAATTTTAAATGAAATTAACAATGATTATAGCTTGttatagtcaaggttgtaggacgcaagattaatatgcaaaagccaactgctttcctgtatactagcaattaacaaatggaatttgaaattaagaaattaaaaacacaataccatttatattagcgttcaaaaaatggaatacttaa--atataaatctaatgaaatatatattatacaagacctatatgaagaaaactataaaactctgat--------gaagtaaatcagagaagaag-------tgaatggagaaatattttatgttcatggatagc--------------------------------------aaaactctacattgtgaggatgtcagtttttccaaacttgatctatagattcaaagcaatctcagtcaaaatcctggcaagttattttgtggatattgacaaactaattctaaagtttaacgggagagggaaaagacccagaataacaaaaataatattgaaggaaaagaacaaagttgaatgactgacactgcttgacttcaaagacttactataaagctacagtaatcaagacagtgtggtattggtgaatgaagaaa-----caatagagtagaa------aatccagaaagagacctacataaatacagtcaaaagatctttcacaaagaagcaagtgcaatacactggagaaaagatagtcttttcaagaagtag-tgctggaacaactgaacatccatatccaaaaaaatgaatatagatacagaacttacatccttcattaaaattaactcaaaatggattgcagacctaactgtaaaatgcaaaactataaaactcttagaagataatgtaggagaaaatctagataaccttgggcttggcaatggcttttaagatatgacaccaaaggcacaatccatgaaagaatgaattgataagctggactttataaaaattaaaattttctgctctatgaaagacacatcaagggaatgagaaaatatttgcaaaaggcatatctgataagggattattatccaaaatgtataaataactcttaagatttaacaaggccagccatggtggctcacacctgtaatgccagcactttgggaggctgaggtgggagaaccgcttgcgaccaggagtttgagtccagcctgggaaacatagtgagacccaatctctacaaaaaattttaaaattatctgggcatgatggtgcatgcctgtagtactggctacttgagaggctgaggcagaggagattgcttgagcccaggagtccaagggttcagtgaacatcaccctgagtgacagagcgagacggtctcaaaaaaaaaaaaaaaaaa-gattcaacagtaagaaaacaaacaagccaatttaaaaatgggccggccaggcacagtggctcacatctgtaatcccagcactttaggaggccgaggcaggcaaatcac--gaggtcaagagatcgagaccatcctgaccccatcctggccaaaatggtgaaaccccgtctctactaaaagtacaaaaattagccgggcatggtggtgcgcgcctgtagtcccacctactcaggaggctga-ggcggcagaattgcttgaacccgggaggtggaggttgcagtgagccgagattgcgccactgcactccagcctg-gcgacagagcaagactccgtcttaaaaaaaaaaaaaaaaaaaaa-----tgggccaaagaccttaacaaaaacctcaccaatgaagatatacagatagcaaataagcatttaaagagatgctgcacatcgcagatcatcagggaaatgtaaattaaagcaacaatgagataccactatgcacctattagaattgccaaaaatccattctaatgacaacaaatactgacaaggatgtggagcaataggaattctcattcattgctgatgagaatgcaaaatgatatagccactttgtgatacagtttggcagcttcttataaaaccaaacataggccgggcatggtggctcatgcctgcaatcccagcactttggaaggccgaggcaggcggatcacaaggtcaggagttcgagaccagcctga-----------ctaacatggtgaaaccccgtctctactaaaaatataaaaattagccaggtgtggcggc--gcatgcctgtaatcccagctactcaggaggctgaggcaggagaatctcttgaacccgggaggcggagtttgcagtgagctgagatcgtgtcactgcac-tccatcctgggcgacatagtgagactccagctaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccataatctatgatc---cagcaatcatactccttggtatttacccaaatgagttaaaaacttatggtacacacaca-acacaaatc----tgcacatgaatgtttatagcagctttattcataattgccaaaacctggaagcaaccacaacatccttcagtaggtgaatggataaataaacgaaggtatatccagacaatggaatattattcagtactaaaaagaaataaactaccaggggataaaaagacatggaagaagcttaaattcatattac----tgagagaagccaatctaaaaaggctaactactgtatgattccaactatatgatagtctggaaaaag-caaaacaatagagacagataaaacattaatggttgtcaggagttaggggagagggaggaatgaag------agcactgaagatttttagggcagtgagaatactct--atggtactataatggtggatacatgtcattatacatttacccaaacctatggaatgcccaacacgaagagagaaccctaatgtaaactacagactttgagtgataataatgtgtcaatgtaggttcatcagttggaacaaatgtatcactctggtcaggaaggttgataatgggggaagc--tatggatggatggaggcagcggctatatggttttatgggaaatctctgtatcttcctctcaattttgctttgaacctaatactgctctttaaaaaaaaaa------------gtatt---ttt---------aaa-aTAAAATTAACAGTAGTA----TTGCAACCCCAAACCATAAGGCT---------------GATCTGGTATAACTA--CAG--CTGTTACTCCAAATTTAGTCTTCTC--A-----AAATACTGTATTCTGAACATAAAAT------------TAGCAG--AGAA------------AAATGATGA-TG----ATACTT--A-------ACAAGGAGATATGAACAAGGTTTATGCC-TTTCGACATATTTTT---CAGTTTAACTTCAGAACCA-------------ATAAA--C---------------------------------------------------------------------------------------------------AATG------CAAA--TTCTATAGGACTTCAGCTACATAGATTG----AAGTACCAATCCTGCTGGATGCAAGCATTCTTTCAAATTAAATTAGAGTGAAGCATACAGGTTTTCCATCTTGTTATGTAGAGATGTGGATT-AATTTTATTT----------CA-CCTAGCCAA----ATGTAATTTT----------TT---TATCAATGTCA-----------------TTATTTCTGTTTTTATACAATTAATCCAAC-TGCAAATCAATCACTTTA--ACAAGCAGT----TTATTTCCTG---AATTAAAC------------TTAAA---------------------CCC-AAAGT-GAAACTGCCTTTGAACT-----TAAAAG-------CCTTAT-------TAAT-AGA----------------------AG-TC-CTCT---GAAATGA-TATAA-A-ATCACCAACAC------------------------------------TTC----ATAATCTATTTTTT-CCCCT------GAGGAA-----CTTCCTAAAATGA---AT-AA--------------------------------------CAG--------------------CCACATCTGCATTTG----CA-------AACAGGAAACT------CTGCA-AGCCATACTAAGAC-CAA--------------------AGCTTAGT-------T----------------------------------ATTAGGTCACTTGCTTAAAAATATTTTAGGACATGCATTAT---TTCAC-TATTACAATATTGGCTAAAAGAGCTTTAATATGCAAGACAGGATGTAAGAGGCTTAGCTGATCCAAATGCCAGTCTATGGATTTGAAAGACGAAAGATCACATCACTAGAAGGTTGACAGAAGTGACACTTTGCAAAGTGCCAATGATTTATGCCAATGTCTTGCTTGATGATACTGTTATAGACAGCACTGTCATTAGGAAGTCCCTGCTGACTTCCTTCTACATTTATGGTGCACAAATTATAGGTGAGCCCA---AAGATCGAACCCTCCCTGCCTTTTAGATTTCAAT-TACCATGTTA--TTTCACTTAGGTTCATTATTGC-----ATGTGCCCTCTT--------TCTTTC----TACCTGCTTC-TTACCTTGTCTAT-------------------A-ACACAGCAATGAGAAGTTAAGGAAT---AAAATT----TATCCTGCC-AAAAAATTA-------AAAGTTATA-AACACATTCCCTGGAAACTCCCACAATCAAAAACTGG-AAGGGATG-TTTCCAAGTCTC-AAAAG------TCTTTCACAATATGCTCTTATTAGGaaaaaataaaataaaaagt---aaaaaataaaaaaataaaaaaaaaaCACTAAGTGCAGttttttttttttttttttttgagatggagttttgctcttgttgcccaggttggaatgcaatggtgcgatctcggctcaccgcaacctctgcctcctgggtgcaagtgattctgctgcctcctgagcagctgggattacaggcatatgccaccatggccggataattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcaaactcacgacctcaggtgatacgcccgcctcggcctcgcaaagtgctgggattacaggcgtgagccaccgcacccagccAAGTGCAGTTTTTAAAGAGCATATTTGAAAACAAAGCTCTGGAGTA--AACTGTCGGGATTACTATGGATTGACTT---------------------------TCCATCACTATGTG--GTGACCTGAGCATTTACAAAACAACTCCTAAGACAGCAAAGAGAAGA------------------------TGAAGCACTTAGTTT--TAAAT---------T----------------------T---TTCTGCTAAACTCCTGCCTT--ATATA--T--AAATATTTGTTGTGG---------TCGAGTTTTTAAAA--ATAAa--gtagttcccttatccaaaggggatattttccaagaccc-----ccagtggatgcctgaaactgcagatagtaccgaaccctttatgtatactat--attttttcctatacatacttacgtacat---ac----atacctatg-acaaagtttaatttataaattagtcacagtaagagatt---aacaataactaataataaaaatagacccattataacaatataccagcactaccactcttgcactttagggccattattaagtaaaataagggttagctgaacacaagtactacaatacacgacagcctatctgacagcccagatggctactaagtgactaacaggcaggtagtggatacagtatggatatgctggacaaagggc-----------agaaaggcatcagagttcgtcacactactcagaacggtacacaatttaaaac--atgaattgtt------tgggatttctctagttaatattttctgaccatggttgaccttgggtaactgaaaccacagaaagtgaaactgtagataaggggg---actactATATTCT---GAAGGGAATTTTAAAATTTTATTATTCC-A-ATATTGTATTTATAGAAA-------CCA--ATAATT s panTro2.7 27303537 5404 + 160261443 AAAGCTATTAAATTCCTAGGGTGCTAAACCAGGAGGTAGGGAGTAACAGTGGTG-GTAACAAGA--ATAACTCTTAGGAAGATAGGGAGCATGTTTT--ACGCTTCCAAAATGCTCTTCTTGAGGCAATATGTATC--------------------------------------------------------------------TATGTCTGAAAGAATTTTAAATGAAATTAACAATGATTATAGCTTGttatagtcaaggttgtaggacacaagattaatatgcaaaagccaactactttcctgtatactagcaattaacaaatggaatttgaaattaagaaattaaaaacacaataccatttatattagcgttcaaaaaatggaatacttaa--atataaatctaatgaaatatatattatacaagacctatatgaagaaaactataaaactctgat--------gaagtaaatcagagaagaag-------tgaatggagaaatattttatgttcatggatagc--------------------------------------aaaactctacattgtgaggatgtcagtttttccaaacttgatctatagattcaaagcaatctcagtcaaaatcctggcaagttattttgtggatattgacaaactaattctaaagtttaacgggagagggaaaagacccagaataacaaaaataatattgaaggaaaagaacaaagttgaatgactgacactgcttgacttcaaagacttactataaagctacagtaatcaagacagtgtggtattggtgaatgaagaaa-----caatagagtagaa------aatccagaaagagacctacataaatacagtcaaaagatctttcacaaagaagcaagtgcaatacactggagaaaagatagtcttttcaagaagtag-tgctggaacaactgaacatccatatccaaaaaaatgaatatagatacagaacttacatccttcattaaaattaactcaaaatggattgcagacctaaatgtaaaatgcaaaactataaaactcttggaagataatgtaggagaaaatctagataaccttgggcttggcaatggcttttaagatacgacaccaaaggcacaatccatgaaagaatgaattgataagctggactttataaaaattaaaattttctgctctatgaaagacacatcaagggaatgagaaaatatttgcaaaaggcatatctgataagggattattatccaaaatgtataaataactcttaagatttaacaaggccaggcatggtggctcacacctgtaatgccagcactttgggaggctgaggcgggagaaccgcttgcgaccaggagtttgagtccagcctgggaaacatagtgagaccccatttctacaaaaaattttaaaattatcttggcatgatggtgcatgcctgtagtactggctacttgagaggctgaggcagaggagattgcttgagcccaggagtccaagggttcagtgaacatcaccctgagtgacagagcgagacagtctcaaaaaaaaaaaaaaaaaaagattcaacagtaagaaaacaaacaagccaatttaaaaatgggccggccaggcacagtggctcacatctgtaatcccagcactttaggaggccgaggcaggcaaatcac--gaggtcaagagatcgagaccatcctgaccccatcctggccaaaatggtgaaaccccgtctctactaaaaatacaaaaattagccgggcatggtggtgcgcgcctgtagtcccagctactcaggaggctga-ggcggcagaattgcttcaacgcgggaggtggaggttgcagtgagccgagattgcgccactgcactccagcctg-gcgacagagcaagactccgtcttaaaaaaaaaaaaaaaaaaaaaaaaaatgggccaaagaccttaacaaaaaccccaccaatgaagatatacagatagcaaataagcatttaaagagatgctgcacatcgtagatcatcagggaaatgtaaattaaagtaacaatgagataccactatgcacctattagaattgccaaaaatccattctaatgacaacaaatactgacaaggatgtggagcaataggaattctcattcactgctgatgagaatgcaaaatgatataatcactttgtgatacagtttggcagcttcttataaaaccaaacataggccgggcatggtggctcatgcctgcaatcccagcactttggaaggccgaggcaggcggatcacaaggtcaggagttcgagaccagcctga-----------ctaacatggtgaaaccccgtctctactaaaaatataaaaattagccaggtgtggcggc--gcatgcctgtaatcccagctactcaggaggctgaggcaggagaatctcttgaacccgggaggcggagtttgcagtgagctgagattgtgtcactgcac-tccatcctgggcgacatagtgagactccagctaaaaaaaaaaaacaacaaaaaa-------------------ccataatctatgatc---cagcaatcatgctccttggtatttacccaaatgagttaaaaacttatggtacacacacacacacaaatc----tgcacatgaatgtttatagcagctttattcataattgccaaaacctggaagcaaccacaacatccttcagtaggtgaatggataaataaacaaaggtatatccagacaatggaatattattcagtactaaaaagaaataaactaccaggggataaaaagacatggaagaagcttaaattcatattac----tgagagaagccaatctaaaaaggctaactactgtatgattccaactatatgatagtctggaaaaag-caaaacaatagagacagataaaacattaatggttgtcaggagttaggggagagggaggaatgaac------agcactgaagatttttagggcagtgagaatactctgtatgatactataatggtggatacatgtcattatacatttacccaaacctatggaatgcccaacacgaagagagaaccctaatgtaaactacagactttgagtgataataatgtgtcaatgtaggttcatcagttggaacaaatgtatcactctggtcaggaaggttgataatgggggaagc--tatggatggatggaggcagcggctatatggttttatgggaaatctctgtatcttcctctcaattttgctttgaacctaatactgctctttaaaaaaaaa-------------gtatt---ttt---------aaa-aTAAAATTAACAGTAGTA----TTGCAACTCCAAACCATAAGGCT---------------GATCTGGTATAACTA--CAG--CTGTTACTCCGAATTTAGTCTTCTC--A-----AAATACTGTATTCTGAACATAAAAT------------TAGCAG--AGAA------------AAATGATGA-TG----ATACTT--A-------ACAAGGAGATATGAACAAGGTTTATGCC-TTTCGACATATTTTT---CAGTTTAACTTCAGAACCA-------------ATAAA--C---------------------------------------------------------------------------------------------------AATG------CAAA--TTCTATAGGACTTCAGCTACATAGATTG----AAGTACCA-TCCTGCTGGATGCAAGCGTTCTTTCAAATTAAATTAGAGTGAAGCATACAGGTTTTCCATCTTGTTATGTAGAGATGTGGATT-AATTTTATTT----------CA-CCTAGCCAA----ATGTAATTT-----------------ATCAATGTCA-----------------TTATTTCTGTTTTTATACAATTAATCCAAC-TGCACATCAATCACTTTA--ACAAGCAGT----TTATTTCCTG---AATTAAAC------------TTAAA---------------------CCC-AAAGT-GAAACTGCCTTTGAACT-----TAAAAG-------CCTTAT-------TAAT-AGA----------------------AG-TC-CTCT---GAAATGA-TATAA-A-ATCACCAACAC------------------------------------TTC----ATAATCTATTTTTT-CCCCT------GAGGAA-----CTTCCTAAAATGA---AT-AA--------------------------------------CAG--------------------CCACATCTGCATTTG----CA-------AACAGGAAACT------CTGCA-AGCCATACTAAGAC-CAA--------------------AGCTTAGT-------T----------------------------------ATTAGGTCACTTGCTTAAAAATATTTTAGGACATGCATTAT---TTCAC-TATTACAATATCGGCTAAAAGAGCTTTAATATGCAAGACAGGATGTAAGAGGCTTGGCTGATCCAAATGCCAGTCTATGGATTTGAAAGACGAAAGATCACATCACTAGAAGGTTGACAGAAGTGACACGTTGCAAAGTGCCAATGATTTATGCCAATGTCTTGCTTGATGATACTGTTATAGACAGCACTGTCATTAGGAAGTCCCTGCTGACTTCCTTCTACATTTATGGTGCACAAATTATAGGTGAGCCCA---AAGATCGAACCCTCCCTGCCTTTTAGATTTCAAT-TACCATGTTA--TTTCACTTAGGTTCATTATTGC-----ATGTGCCCTCTT--------TCTTTC----TACCTGCTTC-TTACCTTGTCTAT-------------------A-ACACAGCAATGAGAAGTTAAGGAAT---AAAATT----TATCCTGCC-AAAAAATTA-------AAAGTTATA-AACACATTCCCTGGAAACTCCCACAATCAAAAACTGG-AAGGGATG-TTTCCAAGTCTC-AAAAG------TCTTTCACAATATGCTCTTATTAGGaaaaaataaaataaaaagtaaaaaaaaaaaaaaaaaaaaaaaaaaaaCACTAAGTGCAG---ttttttgttttttttttgagatggagttttgctcttgttgcccaggttggagtgcaatggtgcaatctcggctcaccgcaacctctgcctcctgggtgcaagtgattctgctgcctcctgagcagctgggattacaggcatatgccaccatggccggataattttgtatttttagtagagacggggtttctccatgttggtcaggctggtctcaaactcccgacctcaggtgatacgcccgcctcggcctcgcaaagtgctgggattacaggcgtgagcgaccgcacccagccAAGTGCAGTTTTTAAAGAGCATATTTGAAAACAAAGCTCTGGAGTA--AACTGTCGGGATTACTATGGATTGACTT---------------------------TCCATCACTATGTG--GTGACCTGAGCATTTACAAAACAACTCCTAAGACAGCAAAGAGAAGA------------------------TGAAGCACTTAGTTT--TAAAT---------T----------------------T---TTCTGCTAAACTCCTGCCTT--ATATA--T--AAATATTTGTTGTGG---------TCGAGTTTTTAAAA--ATAAa--gtagttcccttatccaaaggggatattttccaagaccc-----ccagtggatgcctgaaactgcagatagtaccgaaccctttatgtatactat--a-tttttcctatacatacttacgtacat---ac----atacctatg-acaaagtttaatttataaattagtcacagtaagagattaacaacaataactaataataaaaatagacccattataacaatataccagcactaccactcttgcactttagggccattattaagtaaaataagggttagctgaacacaagtattacaatacacgacagcctatctgacagcccagatggctactaagtgactaacaggcaggtagtggatacagtatggatatgctggacaaagggc-----------agaaaggcatcagagttcgtcacactactcagaacggtacacaatttaaaac--atgaattatt------tgggatttctctagttaatattttctgaccatggttgaccttgggtaactgaaaccacagaaagtgaaactgtagataaggggg---actactATA-------------------------------------------------------------------------- s rheMac2.3 97152705 4861 - 196418989 AAAGCTATTAGATTCCTAGGGTGCTAAACCAGGAGGTAGGGAGTAACGGTGGTG-ATAACAAGA--ATAACTCCCAGGAAGATAGGGAGCATGTTTT--ACACTTCCAAAATGCTCTTCTTGAGGTAATA-GTATC--------------------------------------------------------------------TATGTCTGAAATAATTTTAAATGAAATTAACAGTGATTATAGCCTGTTATAGTCAAGATTGTAGGATACAAGATTAATATGCAAAAGCCAACTGCTTTCCTATATACTAGCAATTAACAAGTGGAATTTGAAATTAAAAAGTTAAAAACACAATACCATTTATATTAGCATTCAAAAAATGGGATACTTAA--ATATAAATCTAATGAAATATATATATTACAAGACCTATATGAAGAAAACTATAAAACTCTGAT--------GAAGTAAATCA---AAGAAG-------TGAATGGAGAAATATTTCATGTTCATGGATAGC--------------------------------------AAAACTCTACATTGTGAGGATATCAGTTTTTCCAAACTTGATCTGTAGATTCAAAGCAATACCAGTCAAAATCCTGGCAAGTTATTTTGTGGATATTGACAAACTAATTCTAAAGTTTAAATAGAGAGGGAAAAGACCCAGAATAACAAAAATAATATTGAAGGAAAAGAACAAAGTTGAATAACTGACACTGCTTGACTTCAAAGACTCACTATGAAGCTACTGTAATCAAGACAGTGTGGTACTGGTGAATGAAGAAA-----CAATAGAATAGAA------AATCCAGAAAGAGACCTACATAAATACAGTCAAAAGACCTTTCACAAAGAAGCAAGCGCCATA-ACTGGAGAAAAGATAGTCTTTTCAAGAAATAG-TGCTGG---AACTGAACATCCATATCCAAAAAAATGAATATAGATACAGAACTTACATCCTTTATTAAAATTAACTCAAAATGGATTGCAGACCTAAATGTAAAATGCAAAACTATAAAACTCTTAGAAGATAATGTAGGAGAAAATCTAGATAACCTTGGGTTTGGCAATGGCTTTTAAGATATGACACCAAAGGCACAATCCACGAAAGAATGAATTGATAAGCTGGAGTTTATAAAAATTATAATTTTCTGCTCTATGAAAGACACATCAAGAGAATGAGAAAATATTTACAAAAGGCATATCTGATAAGGGATTATTATCCAAAACATATAAATAACTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATTCAACAACAA-------------------------------GGCCAGGCATGGTGACTCACACCTGTAATGCCAGCACTTTGGGAGGCTGAGGCAGGAGAATTGCTTGTGCTGAGGAGTTTGAG-----------TCCAGCCTGGGAAACACAGTAAGACTCCATCTCTACAAAAAATTTAAAAATTAGCTGGGCATGATGGTGCATGCCTGTAGTCCTGGCTACCTGAGAGGCTGAGGGAGAGGGGATTGCTTGAGCCCAGGAGTCCAGGGTT-CAGTGA-------------------ACATCAGCCTGAGTGACAGAGCGAGACG--GTCTCAAAAAAAAAAAAAAAAAAAAA--------------------------------------------------------------------AAAAGATTC--------------------------------------AACAGTAAGAAAACA----------------------AACAATCCAATTTAAAAACG---------------------------------------------------------------------------------------------GGCT-------------------GGCTGGGCGCAGTAGCTCACACCTGTAATCCCAGTACTTTGGGAGGCTGAGGTGGGCGAATCACGAGGTGAAGAGATCGAGACCATCCTGACCCCATCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCATGCGTGCCTGTAGTCCCAGCTACTCCGGAGGCTGAGGCAGGAGAATCCCTTGAACCCGGGAGGCGGAGGTTGCAGCGAGCCGAGATCGCGCCACTGCACTTCCAGCCTGGGTGACAGAGCAAGACTCTAGCTCAAAACAAAACGAAACAAAACA----AAACAAAACAAAAAACCATAATCTATGATC---CAGCAATCATGCTCCTTGGTATTTACCCAAATGAGTTAAAAACTTACGGTTCACACACA-AAAAAACCCTGCATGCATGTGGATGTTTATAGCAGCTTTATTCATAATTGCCAAAACCTGGAAGCAACCACGATGTCCTTCAGTAGGTGAATGGATAAATAAACAAAGGTATATCCAGACAATGGAATATTATTCAGTACTAAAAAGAAATAAGCTACCAGGAGATAAAAAGACATGGAAGAAACTTAAATGCATATTACTAAGTGAGAGAAGCCAATCTAAAAAGGCTAACTACTATATGATTCCAGCTATATGATAGTCTGGAAAAAG-CAAAACAATAGAGACAGATAAAAGATTAATGGTTGTCAGGAGTTAGGGGAGAGGGAGAAATGAAC------AGCACTGAGGATTTTTAGGGCAGTGAGAATACTCT----GATATTACAATGGTGGATACATGTCATTATACATTTACCCAAACCTATGGAATGCCCAACATGAAGAGAGAACCCTAATGTAAACTATAGACTTTGAGTGATAATAATGTGTCAATGTAGGTTCATCAGTTGGAACAAATGTATCACTCTGGTGGGGAAAGTTAATAATGGGGGAAGC--TATGCATGGATGGAAGCAGGGGTTATATGGTTTTATGGAAAATCTCTGTATCTTCCTCTCAATTTTGCTTTGAACCTAATACTGCTCTTAAAAAAAAAAAAAAAAAAAAAGCCTATT---TTT---------AAA-ATAAAATTAACAGTAGTA----TTGCAACCCCAAACCATCAGGCT---------------GATCTGGTAT---TA--CAG--CTGTTATTCCAAATTTAGTCTTCTC--A-----AAATACTGTACTCTGAATGTAAAGT------------TAGCAG--AGAA------------AAATGATGA-TG----AAACTT--A-------ACAAGGAGATATGAACCAGGTTTATGCC-TTTCAAGATATTTTT---CAGTTTAACTTCAGAACCA-------------ATAAA--C---------------------------------------------------------------------------------------------------AATT------CAAA--TTCTATAGGACTTCAGCTACATAGATTG----AAATACCAATCCTGCTGAATGCAAGCATTCATTCAAATTAAATTAGAGTGAAGCATACAGGTTTTCCATCTTGTTACGTACAGATGTGGATT-AATTTTATTT----------CA-CCTAGCCAA----ATGTAATTTT----------TT---TATCGATGTCA-----------------TTATTTCTGTTTTTATACAATTCATCCAAC-TGCAAATCAATCACTTTA--ACAAGCAGT----TTATTTCCTG---AATTAAAC------------TTAAA---------------------CCC-AAAGT-AAAACTGCCTTTGAACT-----TAAAAG-------CCTTAT-------TAAT-AGA----------------------AG-TC-CTCT---GAAATGA-TATAA-A-ATCACCAATGC------------------------------------TTC----ATAATCTATTTTTT-CCCCT------GAGGAA-----CTTCCAAAAATGA---AT-AA--------------------------------------CAG--------------------CTGCATCTGCATTTG----CA-------AACAGGAAA--------CTACA-AGCCATACTGAGAC-CAA--------------------AGCTTAGT-------T----------------------------------ATTAGGTCACTTGCTTAAAAATATTTTAGGACATGCATTAT---TTCAC-TATTACAATATTGGCTAAAAGAGCTTTAATATGCGAGACAGGATGTAAGATGCTTAGCTGATCCAAATGCCAGTCTATGGATTTGAAAGACGAAAGATCACATCACTAGAAGGTTGACAGAAGTGACACTTTGCAAAGTGCCAATGATTTATGCCAATGTCTTGCTTGATGATACTGTTATAGACAGCACTGTCATTAGAAAGTCCCTGCTGACTTCCTTCTACATTTATGGTGCACAAATTATAGGTGAGCCCA---AAGATCGAACCCTCCCTGCCTTTTAGATTTCAAT-TACCATGTTA--TTTCACTTAGGTTCATTATTGC-----ATGTGCCCTCCT--------TCTTTT----TACCTGCTTC-TTACCTTGTCTAT-------------------A-ACACAGCAGTGAGAAGGTAAGGAAG---AAAATG----TATCCTGCC-AAAAAATTA-------AAAGTTATA-AACACATTCCCTGGAAACTCCCACAATCAAAAACTGG-AAGGAATGTTTTTCAAGTCTC-AAAAG------TCTTTCACAATACGCTCTTATTAGG----------------------------------------AAAAAAATACTAAGTGCAG------TTTTTGTTTGTTTTGAGATGGAGTTTTGCTTTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTCGGCTCACCACAACCTCCACCTCCCGGGTTCAAACAATTCTCCTGCCTCCTGAGTAGCTAGGATTACAGGCATGTGCCACCATGGCCGGATAATTTTGTATTTTTAGTAGAAACGGGGTTTCTCCATGTTGGTCAGATTGGTCTCGAACTCTCAACTTCAGGTGATCTGCCCACCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCACCCAGCCAAGTGCAGTTTTTAAAGAGCATATCTGAAAGCAAAGCTCTGGGGTA--AACTGTAGGGATTACTATGGATTGACTT---------------------------CCTATCCCTATGTG--GTGACCTGAGCATTTCCAAAACAACTCCTAAGACAGCAAAGAGAAGA------------------------TGAAGCACTTAGTTT--TAAAA---------T----------------------T---TTCTGCTGAACTTCTGCCTT--ATATA--T--AAATATTTGTTGTGG---------TAAAGTTTTTAAAA--GTAAA--GTAGTCCCCTTATCCAAAGGGGATATGTTCCAAGACCC-----CCAGTGGATGCTTGAAACTGCAAATAGTACCGAACCCTTTATGTATACTAT--ATTTTTTCCTATACA--------TACAT---AC----ATACCTATG-ACAAAGTTTAATTTCTAAATTAGGTACAGTAAGAGATTAACAACAATAACTAATAATAAAAATAGAACCATTATAACAATATACCAGCACTACCACTCTTGCACTTTAGGGCCATTATTAAGTAAAATAAGGGTTAGCTGAGCACAAGTACTACAATACACAACAGTCTGTTTTTCAGCCCAGATGGCTACTAAGTGACCAACAGGCAGGTAGTGGATACAGCATGGATATGCTGGACAAAGGGC-----------AGAAGGGCATCACATTTCGTCACACTACTCAGAACGGTACACAATTTAAAAC--ATGAATTATT------TGGGATTTTTCTAGTTAATATTTTCTGACCATGGCTGACCTTGGGTAACGGAAACCACAGAAAGTGAAACTGTAGATAAGGAGG---ACTACCGTACTCT---GAAGAGGATTTAAAAATGTTATTATTCC-A-ATATTGTATTTATAGAAA-------CCA--ATAATT a score=2222.2 s hg18.7 26972251 884 + 158821424 TTATCTTGTACTT----GGAAAAAA----ATTTCAGCTTTTGTGAACTATCTTCAACTTACTGA------AGTG-----GAGATGAAATGAACTAGCTGTT---------------ATTTCTTTTTAAC---AAAAATTACAATAGCCTTTAACTT--------TTTTCCT-GAAAGAAATCTCAGACAAGCCCAGAAACATTTATGGGTGCTTA-----------ATTTGTTTGAAATAACTACTTTTAGTTTCTTCATATCTTTACTTAA---TAGCAAAATAAATG-ACTTTGAAAGTCCAG-TGTGAAAAGA-GATTGGCCCAAAAGAT----TTAATTGCAACTCTATTACTATTTAGATTTT-----------------------------------------------------------------------------------------ATAATGTTGGT--T-------GTGTT---C-TTTCCTT-AGTGTGTTATTAAATA-----TAGAATGATACCAATTAAAGTTCATAC-----AAT--AAAATAAAAACGTACAGGCCAAA--TT------ATTCTAAATGAAAA---CCATCCAAGATGAAATTTGTTTTGAAAACT--AAAATGTAT---AAAACAACAGCTACTTT--AA-------------------------TTTTTTTGAATCAAAAAGAT-T-----AAA----------TGGAAAGGC-CAAGC--TAAGATAACCAC--------ATGACAGCATTAAACCAAAAGTTACTGTTTAGAAAACTAAGCA----ACCACATCGACAATTAAA-ATACAC----AGTACC---------------------------------------------------------------------------------------------TTCTA-TTTACTGGAGGCAACAGAAGCTAACAGAAAGGAACCAAAGGAAATAAAGCTTCAGTCAAACAGACTGGGATTTAAGGAAAGCTCCATTCCCAGTGGATAATA--------------------------------------GCCCAGTGGAAAACTAAGACACCTACCCAAGCTGACTGATTGGCTGTACATATCA---------GGGGTAGACTAGTATGCTGTAAGGATGGTGGGAGTGGGGGCA---AATG----------TTAAATGGTTGCCCCAAAATAAGTGTTATTAAAATATT-----GAA---------G---------------------ttttattttattttattttat----ttttgagttggagtctcactc s panTro2.7 27309157 888 + 160261443 TTATCTTGTACTT----GGAAAAAA-----TTTCAGCTTTTGTGACTTATCTTCAACTTACTGA------AGTGAAGTTGAGATGAAATGAACTAGCTGTT---------------ATTTCTTTTTAAC---AAAAATTACAATAGCCTTTAACTT--------TTTTCCT-GAAAGAAATCTCAGACAAGCCCAGAAACATTTATGGGTGCTTA-----------ATTTGTTTGAAATAACTACTTTTAGTTTCTTCATATCTTTACTTAT---TAGCAAAATAAATG-ACTTTGAAAGTCCAG-TGTGAAAAGA-GATTGGCCCAAAAGAT----TTAATTGCAACTCTATTACTATTTAGATTTT-----------------------------------------------------------------------------------------ATAATGTTGGT--T-------GTGTT---C-TTTCCTT-AGTGTGTTATTAAATA-----TAGAATGATACCAATTAAAGTTCATAC-----AAT--AAAATAAAAATGTACAGGCCAAA--TT------ATTCTAAATGAAAA---CCATCCAAGATGAAATTTGTTTTGAAAACT--AAAATGTAT---AAAACAACAGCTACTTT--AA-------------------------TTTTTTTGAATCAAAAAGAT-T-----AAA----------TGGAAAGGT-CAAGC--TAAGATAACCAC--------ATGACAGCATTAAACCAAAAGTTACTGTTTAGAAAACTAAGCA----ACCACATTGACAATTAAA-ATACAC----AGTACC---------------------------------------------------------------------------------------------TTCTA-TTTACTGGAGGCAACAGAAGCTAACAGAAAGGAACCAAAGGAAATAAAGCTTCAGTCAAACAGACTGGGATTTAAGGAAAGCTCCATTCCCAGTGGATAATA--------------------------------------GCCCAGTGGAAAACTAAGACACCTACCCAAGCTGACTGATTGGCTGTACATATCA---------GGGGTAGACTAGTATGCTGTAAGGATGGTGGGAGTGGGGGCA---AATG----------TTAAATGGTTGCCCCAAAATAAGTGTTATTAAAATATT-----GAA---------G---------------------ttttattttattttattttat----ttttgagttggagtctcactc s rheMac2.3 97157566 918 - 196418989 TTATCTTGCACTT----GGAAAAAC----ATTCCGGCTTTTGTGAACTATCTTCAACTTACTGA------AGTGAAGTTGAGATGAAAGGAACTAGCTGTT---------------ATTTCTTTTTAAC---AAAAATTACAATAGCCTTTAACTT--------TTTTTCT-GAAAAAAATCTCAGACAAGCCCAGAAACATTTATGTGTGCTTA-----------ATTTGTTTGAAATAACTACTTTTAGTTTCTTCATATCTTTACTTAA---TAGGAAAATAAATG-ACTTTGAAAGTCCGG-TGTGAAAAGA-GATTGGCCCAAAATAT----TTAATTGTAACTGTATTACTATTTAGATTTT-----------------------------------------------------------------------------------------ATAATGTTGGT--T-------GTGTT---C-TTTCCTT-AGTGTGTTATTAAATA-----TAGAATGACACCAATTAAAGTTCATACAATAAAAT--AAAATAAAAATGTACAGGCCAAA--TT------TTTCTAAATGAAAA---CCATCCAAGATGAAATTTGTTTTGAAAACT--AAAATGTAT---AAAACAACAGCTACTTT--AA-------------------------TTTTTTCGAATCAAAAAGAT-G-----ACA----------TAGAAAGGT-CAAGC--TGAGATAACCAC--------ATAACAGCATTAAATCAAAAGTTACTGTTTAGAAAACTAAGCA----ACCACATTAACAATTAAA-ATACAC----ATTACC---------------------------------------------------------------------------------------------TTCTA-TTTACTGGAGGTAATAGAAGTTAACAGAAAGGAACCAAAGGAAACAAAGCTTCAGTCAAACAGACTGGGATTTAAGGAAAGCTTCGTTCCCAATGGATAATA--------------------------------------GCCCAGTGGAAAACTAAGATACCTATCCAAGCTGATTGATTGGCTGTACATATCA---------GGGGTAGACTAGTATGCTGTAAGGATGGTGGGAGTGGGGGCC---AGTG----------TTAAATGGTTG-CCCAAAATAAGCGTTATTAAAATATT-----TAA---------GTTTTATTTTATTTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTGAGACGGAGTCTCGCTC a score=-3850.8 s hg18.7 26973135 5494 + 158821424 tgtctcccaggttggagtgcggtggcatgatctcggctcactgcaacctccatctcctgtgttcaattgattctcctgcctcagcctccccagcagctgggattagaggcacgtgtcaccatgcccag------------------ctattttttttttatttttagtagagacggggtttcaccatgatggccagggtgaccttgtactcctgacctcaaatgatccgcccacctcaacctcccaaagtgctgggattacaggcgtgagccaccac-----accAAAATATTTAAGTTTTAATTACACAAATAGTATATTAATATATCCTCCTTATTTTAAAAAAGTTAAACATAAT----AAAGTTA---AAGTTCACTTCAACCCTTTGGATGCTCCAGA-CCTTTTAAAAACCATTTACTTattaaaaactacataaatgtcaaccaacacagaagaacagctaaatagactatgg-tatatacataccaaaaagtagtatgaaactttagaatgacat---agatttttt---tatgcgctaa-tatggaaagatctcT----------------TCAAAAA---AAATTACAGAATGACATATACCTTATAATATCATTTACATAAAATAT-ATCAGTTATATAAAACAATATTAATACCCATCCTTGGGAATTCTC---------------------------TTGTAGATCCCAGCACCTATGTTTGACCCCATCATTGGTACATAATCATGGA-CA-CTTTTGACATGTTTTCTAGTATCTTGTACTATTAGTTAATT--TTTCTTTTGAGTGTACTTTACAGAACCCTCAATAGCATTA--------------------AGTATGCAC-AGAATAAGCACTCAGTCAATATAATTTAGACAAA-------TACTTTTATACCTACTAAGATTGATG--------GTAAAGGATGACAGCTAT-AATTCTTGC-AAG-----------TTTA-CTTCAACAGGTTTAG-AGTAATGTGAGGTTCAGTATGAATATTTATTCACC-----ttttttttttt-------ttttttttttttgagatggagtctcactctgttgcccaagctggagtgcagtggtgggatctctgctcactctctgctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgtgtagctgggactacaggcatgcgccaccatgtct-gactaatttttgtatttttagtagagacagggtttcaccatgttggccaggatggtATTCACCTTCTTTTAATAAGAGAAAAGCAATGACAttttctttttaaaaaaattttaaaaacttttaagttcaggggtacctgtgcaggtttgttacataggaaaacatgtgtcatgggggtttgttgtttagattattttatcacccagatattaagcctattaccctaagttatttttcctgatcctctccttcctctcactctccaccctcaagtaggccccagtgtgtgttgtacccctctatgtgtccatgtgttctcatcctttagcgccaacttataagtgagaacatacggtatttggttttctgttcctgctttagtttgctaaggataatggcctccaactccatcaatgtccctgcagaggacatgatcttgttctttttaatggcttcatagtattttatggtgtatatgtaccacattttctttattcagtctaccattgatgagcatttaggttgattccatgtctttgctattgtgaatagtgctgcaatgaacatacacatgcatttgcctttataatagaacaatttatattcctttgagtatttacccagtaatgggattcctgggtcaaatggtatttctgtctttaggtctttgaggaattgccacgctgtcttccacaatggttgaactaatttacagtcccaacaacagtatataagcattcctttttctcaacaacctcaccagcatctgttatttttt-actttttaataatagtcattatgactcgtgtgaggtactatctcactgtagttttgatttgcctttctctaatgatcattgatgctgagctttttttcttatgactgttggctgcatgtgtgtcttcttttgagaagtgtctgtttatgtcctttgttcactttttaatggggctgtttggttttttttcttgtaaatttaagttccttatagatgctggatattagacctttgtcagatgcatagtttgcaaaaattttctcccattctgcaggttgtctgtttactctgttgatagtttcttttgctgtgcagaaactctttaattagattgtatttgtccatttttgcttttgttgcaattgctttgatgtctccatcaagaaatatttgcccatgcctatgtcctgaatgatattgcccgggt-----tgtcctccagagtttttatagttttgggttttacatttaagtcttcaatccatcttcagttaatttttgtataaaagaaggggtctagtttcaatcttccgcatatgacttagccagttatcccagcaccgttttctgaatagagaatcttttctttatagcttgtttttgtcaggtttgtcaaagatcagatagttgttggtgtgtggtcttatttctgggttctctattctgttccactggtctgtgtgtctgttcttgtaccagtaccataatgttttggttactgtagccttgtatagtttgaagttgggtagcatgatgcctccagctttgttctttttatttaggattgccttggctattctggctctttttggtttcatatgaattttaaaatagtttttttatagttctgtgaagaatgtcagtgatagtttaatgggaatagcactgaatctataaattgctttgggcagtatggtcattttaataatattgattcttcctatgtatgagcatgaaa-ttttttttatttgtgtcatctctgatttctttgagcagtggtttgtagttctccttgtagagatctttcacctccctagttagctgtattttcaggtattttattcttttcgtggcaattgtgaatgggagtttgtttgtgatttggctgtcagtttgcctgttgttggtgtat--aggaatgctagcgatttttgcacattgattttgcatcctgagactttgctgaaatcgcttatcagcttaagaagcttttgggctgagacaatggggttttctagatataggatcatttcatctgctaatagggatagtctgacttcctcttttcctatttgtatgccctttatttctctctcttacctgattgctctggccagaagttccaatactatgttgaatagcagtggtgagaaagggcatccttgtcttgtgccagttttcaagaggaatgtttccaatgtttgcccattcagtatgatgttggctgtgggcttgtcatatatggctcttattattttgaggtatgtttcttcaacacctagtttattgagagtttttaacatgaatgaatgttgaattcgattgaaacccttttctccatctattgagataatc--gtggtttttgtctttagttctgtttaggtgatgaatcacatttattgatttgcatatgttgagccaaacttgcatcctggggatgaagcctatttgattgtggtggataagctttttgatatgctgctagattcagtttgccagtattttgttgaggaattttgcattgaggttcatcaaggatattagcctgaagttttctttttttgttatatctctgccaggttttggtatcaggatgatgctggcctcatagaatgagttagggaggggtacctccttttcaattttttggaatagtttcagtagtaatggtactagctcttctttgtacatctggtagaattcagctatgaatccatctagtcctgggctttttttggctggtaggacatttattactgcctcaattttagaacttgttattggtctgttcagggattcagtttcttcctggctcagtcttggaagggtgtatgtgtccaggaatttatccgtttcttctagattttctagtttatgtgcataggggtgtttctaatattctctgatggttgtttgtatttctgtggggtcagtggtaatatccactttatcatttctgattgtgtttatttgaatcttctctcttttcttctttattagtctagctagtggtctattttacaattttttcagaaaatcagctcctggattcattggtctcttgaatg----ttttttttttttttgtatctctatctccttcagtttatctctatttttggttattttttctctcctgctagctttgggatttgtttgctctgagttctctcactcttttatttgtgatgttaggttgttattataattagagatctttctaatttctaatttgggtatttagtgcaataaatttccctcttaacactgccttatctgtgtcccagagattgtgatacattgtatctctgttctcactagtttcaaagaacttcttgattgctgccttaatttcattatttacccaaaagtcattcaggagcaggttattcaatttccatgtaattgtatgcttttgagtaaatttcttagtcttgagttctaa-tttgattgcactgtggtccgagagactgtttgttatgatttcagttcttctgcatttgctga-gagtgttttacttctgattatgtgattgattttagagtaagtgccatgtggcaatgagaagaatgtatattctgttgttttagggtggagatatttgtagatatatatcaggtccatttgttctagggctgagctcaggtcctgaatatctttgttaattttctgtcttgataatctgtctaatatcatcagtggggtgttaaggtctcccactattattgtgtgggagtctaagtctctttgaaggtctctaagaactttcttcaagaatctgggtgctcctgtgttgaatgcatatatatttaggatagttag---ttcttgttgaattgaatcctttaccactatataatgcctttctttgtcttcttcgatctttgttggtttagagtctctttgtcagaagttaggattgcaatgtctgctt--------------ttttctgttttccatttgcttggtagatttttatccatccctttattttgagcttatgtgtgtcactgcatgtgagatgggtctcttgaagacagcataccaaagggtcttggttctttatccagcttgccactctgtgtccttaattgggacactgagcccatttacatttaaagttagtgttgatatgtttggatttgatcctgtcatcatgatgttagctggttgttttgcagaatttttatgtggttgctttatagcatcaccggtct----------gtgtgttttgtagtagctagtaacaatctttcctttccatatttagtgcttccttcagtagctcttgtaaggcaggtctggtggtaatgaattccctcagcatttgcttgtctaaaaaggatcttatttctcctttgcttatgaaggttagtttagccacatatgaaattctgggttggaatttcttttctttaagaata-------------------------------------------------------------------------tagaatattgggccc s panTro2.7 27310045 5505 + 160261443 tgtctcccaggttggagtgcggtggcatgatctcggctcactgcaacctccatctcctgtgttcaattgattctcctgcctcagcctccccagtagctgggattagaggcacgtgtcaccatgcccag------------------ctattttttttttatttttagtagagacggggtttcaccatgatggccagggtgaccttgtactcctgacctcaaatgatccgcccacctcaacctcccaaagtgctgggattacaggcgtgagccaccac-----accAAAATATTTAAGTTTTAATTACACAAATAGTATATTAATATATCCTCCTTATTTTAAAAAAGTTAAACATAAT----AAAGTTA---AAGTTCACTTCAACCCTTTGGATGCTCCAGA-CCTTTTAAAAACCATTTACTTattaaaaactacataaatgtcaaccaacacagaagaacagctaaatagactatgg-tatatacataccaaaaagtagtatgaaactttagaatgacat---agatttttt---tatgcgctaa-tatggaaagatctcT----------------TCAAAAA---AAATTACAGAATGACATATACCTTATAATATCATTTACATAAAATAT-ATCAGTTATATAAAACAATATTAATACCCATCCTTGGGAATTCTC---------------------------TTGTAGATCCCAGCACCTATGTTTGACCCCATCATTGGTACATAATCATGGA-CA-CTTTTGACATGTTTTCTAGTATCTTGTACTATTAGTTAATT--TTTCTTTTGAGTGTACTTTACAGAACCCTCAATAGCATTA--------------------AGTATGCAC-AGAATAAGCACTCAGTCAATATAATTTAGACAAA-------TACTTGTATACCTACTAAGATTGATG--------GTAAAGGATGACAGCTAT-AATTCTTGC-AAG-----------TTTA-CTTCAACAGGTTTAG-AGTAATGTGAGGTTCAGTATGAATATTTATTCACCtt---ttttttttttt-------ttttttttttttgagatggagtctcactctgttgcccaagctggagtgcagtggtgggatctctgctcactctctgctcactgcaacctccacctcctgggttcaagtgattctcctgcctcagcctcccgtgtagctgggactacaggcatgcgccaccatgtct-gactaatttttgtatttttggtagagacagggtttcaccatgttggccaggatggtATTCACCTTCTTTTAATAAGAGAAAAGCAATGACAttttctttttaaaaaaattttaaaaacttttaagttcaggggtacctgtgcaggtttgttacataggaaaacatgtgtcatgggggtttgttatttagattattttatcacccagatattaagcctattaccctaagttatttttcctgatcctctccttcctctcactctccaccctcaagtaggccccagtgtgtgttgtacccctctatgtgtccatgtgttctcatcatttagcgccaacttataagtgagaacatacggtatttagttttctgttcctgctttagtttgctaaggataatggcctccaactccatcaatgtccctgcagaggacatgatcttgttctttttaatggcttcatagtattttatggtgtatatgtaccacattttctttattcagtctaccattgatgagcatttaggttgattccatgtctttgctattgtgaatagtgctgcaatgaacatacacatgcatttgcctttataatagaacaatttatattcctttgagtatatacccagtaatgggactcctgggtcaaatggtatttctgtctttaggtctttgaggaattgccacgctgtcttccacaatggttgaactaatttacagtcccaacaacagtatataagcattcctttttctcaacaacctcaccagcatctgttatttttt-actttttaataatagtcattatgattcgtgtgaggtactatctcattgtagttttgatttgcctttctctaatgatcattgatgcttagctttttttcttatgactgttggctgcatgtgtgtcttcttttgagaagtgtctgtttatgtcctttgttcactttttaatggggctgtttggttttttttcttgtaaatttaagttccttatagatgctggatattagatctttgtcagatgcacagtttgcaaaaattttctcccattctgcaggttgtctgtttactctgttgatagtttcttttgctgtacagaaactctttaattagattgcatttgtccatttttgcttttgttgcaattgctttgatgtctccatcaagaaatatttgcccatgcctatgtcctgaatgatattgcccgggt-----tgtcctccagagtttttatagttttgggttttacatttaagtcttcaatccatcttcagttaatttttgtataa---aaggggtctagtttcaatcttccgcatatgacttagccagttatcccagcaccgttttctgaatagagaatcttttctttattgcttgtttttgtcaggtttgccaaagatcagatagttgttggtgtgtggtcttatttctgggttctctattctgttccactggcctgtgtgtctgttcttgtaccagtaccacgatgttttggttactgtagccttgtatagtttgaagttgggtagcatgatgcctccagctttgttctttttatttaggattgccttggctattccggctctttttggtttcatatgaattttaaaatagtttttttatagttctgtgaagaatgtcagtgatagtttaatgggaatagcactgaatctataaattgctttgggcagtatggtcattttaataatattgattcttcctatgtatgagcatgaaatttttttttatttgtgtcatctctgatttctttgagcagtggtttgtagttctccttgtagagatctttcacctccctagttagctgtattttcaggtattttattcttttcgtggcaattgtgaatgggagtttgtttgtgatttggctgtcagtttgcctgttgttggtgtat--aggaatgctagcgatttttgcacattgattttgcatcctgagactttgctgaaatcgcttatcagcttaagaagcttttgggctgagacaatggggttttctagatataggatcatttcatctgctaatagggatagtctgacttcctcttttcctatttgtatgccctttatttctctctcttacctgattgctctggccagaagttccaatactatgttgaatagcagtggtgagaaagggcatccttgtcttgtgccagttttcaagaggaatgtttccaatgtttgcccattcagtatgatgttggctgtgggcttgtcatatatggctcttattattttgaggtatgtttcttcaacacctagtttattgagagtttttaacatgaatgaatgttgaattcgattgaaacccttttctccatctattgagataatc--gtggtttttgtctttagttctgtttaggtgatgaatcacatttattgatttgcatatgttgagccaaacttgcatcctggggatgaagcctatttgattgtggtggataagctttttgatatgctgctagattcagtttgccagtattttgttgaggaattttgcattgaggttcatcaaggatattagcctgaagttttctttttttgttatatctctgccaggttttggtatcaggatgatgctggcctcatagaatgagttagggaggggtacctccttttcaattttttggaatagtttcagtagtaatggtactagctcttctttgtacatctggtagaattcagctatgaatccatctagtcctgggctttttttggctggtaggacatttattactgcctcaattttagaacttgttattggtctgttcagggattcagtttcttcctggctcagtcttggaagggtgtatgtgtccaggaatttatccgtttcttctagattttctagtttatgtgcataggggtgtttctaatattctctgatggttgtttgtatttctgtggggtcagtggtaatatccactttatcatttctgattgtgtttatttgaatcttctctcttttcttctttattagtctagctagtggtctattttacaattttttcagaaaatcagctcctggattcattggtctcttgaatgttttttttttttttttttgtatctctatctccttcagtttatctctatttttggttattttttctctcctgctagctttgggatttgtttgctctgagttctctcactcttttatttgtgatgttaggttgttattaaaattagagatctttctaatttctaatttgggtatttagtgcaataaatttccctcttaacactgccttttctatgtcccagagattgtgatacattgtatctctgttctcactagtttcaaagaacttcttgattgctgccttaatttcattatttacccaaaagtcattcaggagcaggttattcaatttccatgtaattgtatgcttttgagtaaatttcttagtcttgagttctaa-tttgattgcactgtggtccgagagactgtttgttatgatttcagttcttctgcatttgctga-gagtgttttacttctgattatgtgattgattttagagtaagtgccatgtggcaatgagaagaatgtatattctgttgttttagggtggagatatttgtagatatatatcaggtccatttgttctagggctgagctcaggtcctgaatatctttgttaattttctgccttgataatctgtctaatatcatcagtggggtgttaaagtctcccactattattgtgtgggagtctaagtctctttgaaggtctctaagaactttcttcaagaatctgggtgctcctgtgttgaatgcatatatatttaggatagttag---ttcttgttgaattgaatcctttaccactatataatgcctttctttgtcttctttgacctttgttggtttagagtctgttt-------gttaggattgcaatgtctgcttttttctgttttctgttttctgttttccatttgcttggtagatttttatccatccctttattttgagcttatgtgtgtcactgcatgtgagatgggtctcttgaagacagcataccaaagggtcttggttctttatccagcttgccactctgtgtccttaattgggacactgagcccatttacatttaaagttagtgttgatatgtttggatttgatcctgtcatcatgatgttagctggttgttttgcagaatttttatgtggttgctttatagcatcaccggtct----------gtgtgttttgtagtagttagtaacaatctttcctttccatatttagtgcttccttcagtagctcttgtaaggcaggtctggtggtaatgaattccctcagcatttgcttgtctaaaaaggatcttatttctcctttgcttatgaaggttagtttagccacatatgaaattctgggttggaatttcttttctttaagaata-------------------------------------------------------------------------tagaatattgggccc s rheMac2.3 97158765 5571 - 196418989 TGTCTCCCAGGTTGGAGCGCAGTGGCATGATCTCGGCTCACTGCAACCTTCATTTCCTGTGTTTAATCGATTCTTCTGCCGCAGTCTCCCCAGTAGCTGGGGTTAGAGGCACGCGTCGCCACGCCCAGTTTTGTTTTTTGTTGGTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGGTGGCCTTGTACTCCTGACCTCAAATGATCCACCCATCTCAGCCTCCCAAAGTGCTGCAATTACAGGCGTGAGCCACCGTGCCCAGCCAAAATATTTAAGTTTTAATTACACAAATAGAATATTAATATATCCTCCTTATTTAAAAAAAGTTAAACATAAT----AAAGCTA---AAGTTTACTTCAACCCTTTGGATGCTCCAGACCCTTTTAAAAACCATTTACATATTAAAAACTACCTAAATGTCAACCAACATGGAAGAACAGCTAAATAGACTATGGTTATATACATACCAAAAAGTAGCATGAAACTTTAGAATGAC-----AGATTTTTT---TATGCACTAA-TATGGAACAATCTCT----------------TC-AAAA---AAATTACAGAATGACATATACCTTATAATATCATTTATATAAAATAT-ATTCATTATATAAAACAGTATTAATACCCATCCTTGGGAATTCTC---------------------------TTGTAGATCCCAGCACCTATGTTTGACCCCATCATTGGTACATAATCACAGA-CATCTTTTGACAAGTTTTCTAGTATCTTGTACTA----TTAATT--TTTCTTTTGAGTGTACTTTACAGAACCCTCAATAGCACTG--------------------AGTATGCAC-AGAATAAGCACTCAGTCAATATGATTTAGACAAA-------TACTTTTATACCTACTAAGATTGATG--------GTAGAGGATGACAGCTAT-AATTCTTGC-AAG-----------TTTA-CTTCGACAGGTTTAG-AGTAATGTGAGGTTCAGTATGAATATTTATTCATCTTTTGTTTTTTTTGTT-------TTTTTTTTTTTTGAGTTGGAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGACGGGATCTCTGCTCACTCTCTGCTCACTGCAGCCTCTGCCTCCTGGGTTCAAAGGATTCTCCTCCCTCAGCCTCCCAAGTAGCTGGGACCACAGGCATGTGCCACCATGTCTCTACTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGATGGTATTCATCTTCTTTTAATAAGAGAAAAGCAGTAACATTTTCTTTTTCAAACTTTTAAAAAAACTTTTAAGTTCAGGGGTACCTGTGCAGGTTTGTTACCTAAGTAAACATGTGTCATGGGGGTTTGTTGTGCAGATTATTTTATCACCCAGATATTAAGCCTATTACCCTAAATTATTTTTCCT-ATCCTCTCCTTCCTCTCACTCTCCACCCTCAAGTAGGCCCCAGTGTGTGTTGTTCCCCTCTATGTGTCCATATGTTCTCACCATTTAGCACCAACTTATAAGTGAGAACATATGGTATTTGGTTTTCTGTTCCTGCATTAGTTTGCTAAGGGTAATGGCCTCCAGCTTCATCCATGTTGCTGCAAAGGACATGATCTTGTTCTTTTTTATGGCTTCATAGTATTTCATTGTGTTTATGTACCACATTTTCTTTATCCAGTCTACCATTGATGAGCATTTAGGTTGATTGCATGTC--TGCTATTGTGAATAGTGCTGCAATGAACATACACATGCATTTACCTTTATAATAGAACAATTTATATTCCTTTTAGTATATACCCAGTAATGGGATTCCTGGGTCAAATGGTATTTCTGTCTTTAGGTCTTTGAGGAATTGCCACGCTGTCTTCCACGATGGTTGAACTAATTTACAGTCCCAACAACAG--TATAAGCATTCCTTTTTCTCCACGACCTCACCAGCATCTGTTATTTTTTGACTTTTTAATAATAGTCATTATGACTGGTGTGAGGTAGTCTCTCATTGTAGTTTTGATTTGCCTTTCTCTAATGATCAGCAATGCTGAGCTTTTTTTCATATGATGGTTGGCTGCATGTGTGTCTTCTTTTGAGAAGTGTCTGTTTATATCCTTTGTTTACTTTTTAACGGGGCTGTTTGG-TTTTTTTCTTGTAAATTTAAGTTCCTTATAGATGCTGGATATTAGACCTTTGTCAGATGCATAGTTTGCAAAAATTTTCTCCAGTTCTGCAGGTTGTCTGTTTACTCTGTTGATAG------TTGCTGTGCACAAACTCTTTAATTAGCTCACATTTGTCCATTTTTGCTTTTGTTGCAATTGCTTTGGCATCTCCATCATGAAATATTTGTCCATGCCTATGTCCTGAATGATACTGCCTGAGTGATGCTGTCCTCCAGAGTTTTTATAGTTTTGGGTTTTACATTTAAGTCTTCAATCCATCTTGAGTTAATTTTGGTATAAAGGAAGGGGTCTAGTTTCAACCTTCTGCATATGACTTAGCCAGTTATCCCAGCACCATTTTCTGAATAGAGAATCCTTTCCTTATTGCTTGTTTTTGTCAGGTTTGTCAAAGATCAGATAGTTGGTGGTGTGTAGACTTATTTCTGGGTTCTCTGTTCTGTTCCATTGACCTATGTGTCTGTTCTTGTACCAGTACCACGATGTTCTGGTTACTGTAGCCTTGTATAGTTTGAAGTTGGCTAGCATGATGCCTCCAGCTTTGTTCTTTTTACTTAGGATTGCCTTGGGTATTCAGGCTCTTTTTGGTTTCATATGAATTTTAAAATAGTTTTTTTATAGTTCTGTGAAGAATGTCAGTGATAGTTTAATAGGAATAGCATTGAATCTATAAATTGCTTTGGGCAGTATGGTCATTTTAATAATATTGATTCTTGCTGTGTATGAGCATGAAA-TATTTTTTATTTGTGTCATCTCTGATTTCTTTGCACAGTGGTTTGTAGTTCTCCTTGTAGAGATCTTTCACTTCCCTAGTTAGCTGTATTTCCAGGTATTTTATTCTTTTTGTGGCAATTGTGAATGGGAGTTTATTTGTGATTTGGCTGTCAGTCTGCCTATTGTTGGTGTATACATGATTGCCAGCGATTTTTGCACATTGATTTTGCATCCTGAGACTTTGCTGAAGTTGCTTATCGACTTAAGAAGTTTTTGGGCTGAGACAATGGGGTTTTCTAGATATAGGATCATGTCATCTGCTAACAGGGATAGTCTGACTTCCTCTATTCCTATTTGTATGCCCTTTATTTATCTCTCTTGCCTGACTGCCCTGGCCAGAAGTTCCAATACTATGTTGAATAGCAGTGGTGAGAAAGGGCATCATTGTCTTGTGCCAGTTTTCAAGAGGAATGTTTCCAACGTTTGCCCATTCAGTATGATGTTGGCTGTGGACTTGTCATATATGGCTCTAATTATTTTGAGGTATGTTTCTTCAATACATAGTTTATTGAGAGTATTTAACATGAATGAATGTTGAATTCGATTGAAAGCCTTTTCTCCATCTATTGAGATAATCATGTGGTTTTTGTCTTTAGTTCTGTTTATGTGATGAATCACATTTATTGATTTGCATATGCGAAGCCAACCTTGCATCCTGGGGATGAAGCCTATTTGATTGTGGTAGATAAGTTTTTTGATATGCTGCTAGATTCGGTTTGCCAGTATTTTGTTGAGGAATTTTGCATTGAGGTTCATCAAGGATATTAGCTTGAAGTTTTCTTTTTTTACTATGTCTCTGCCAGGTTTTGGTATCAGGATGATACTGGCTTCATAGAATGAGTTAGGGAGGGGTACCTCCTTTTCAATTTTTTGGAATAGTTTCAGTAGTAATGGTACTAGCTCTTCTTTGTACATCTGGTAGAATTCAGCTATGAATTCATCTAGTCCTGGGC-TTTTTTGGTTTGTAGGATATTTATTATTGCCTCAATTTTAGAACTTGTTATTGGTTTATTCGGGGATTCAGTTTCTTCCTGGTTCAGACTTGGAAGGTTGTATGTGTCCAGGAATTTATCCATTTCTTCTAGATTTTCTAGTTTATGTGCATAGAGGTGTTTATAATATTCTCTGATGGTTGTTTGTATTTCTGTGGGGTCAGTGGTAATATCCACTTTATCATTTCTGATTGTGTTTATTTGAATCTTCTCTCTTTTCTTCTTTATTAGTCTAGCTAGTGGTCTATTTTACAATTTTTTCAGAAAATCAGCTCCTGGATTCATTGTTCTCTTGAA------------TTGTTTTTGTATTTCTATCTCCTTCAGTTTATCTTTACTTTTGGTTATTTCTTCTCTCTTGCTAGCTTTTGGATTTGTTTGCTCTTAGTTCTCTCATTCTTTAATGTGTGATGTTAGATTGTTATTATAACTTGAGA----TCTAATTTCTAATTTGGGCATTTAGTTCAATACATTTCCCTCTTAACACTGCCTTATCTGTGTCTCAGAGATTCTGATATATTGTATCTCT-------CTAGTTTCAAAGAACTTCTTGATTTCTGTCTTAATTTCATTATTTACCCAAAAGTCATTCAGGAGCAGGTTATTCAATTTCCATGTAATTGTATGCTTTTGAGTAAATTTCTTAGTCTTGAGTTCTAATTTTGATTGCACTGTGGTCCAAGAGAGTGTTTGTTATGATTTTAGTTCTTCTGCATTTGCTAAGGAGTGTTTTACTTCTGATTATGTGATCAATTTTAGAGTAAGTGCCATGTGGCAATGAGAAGAATGTATATTCTGTTGTTTTTGGGCGGAGATATTTGTAGATATATATCAGGTCCATTTGATCTAGGGCTGAGTTCAGGTCCTGAATATCTTTGTTAATTTTCTGACTTGATGATCTGTCTAATATCGTCAGTGGGGTGTTAAAGTCTCCCACTATTATTCTGTGGGAGTTTAAGTCTCTTTGTAGGTCTCTAAGAACTTTCTTTAAGAATCTGGGTGCTCCTGTGTTGAATGCATATATATTTAGGATAGTTAGTTCTTCTTGTTGAATTGAATCCTTCACCACTATATAATGCCTTTCTTTGTCTTCTTTGATCTTTATTGGTTTAGAGTCTCTTTGTCAGAAGTTAGGATTGCAACCTCTGCTT--------------TTTTCTGTTTTCCATTTGCTTGGTAGATTTTTCTCCATCCCTTTATTTTGAGCCTATGTGTGTCACTGCATGTGAGATAGGTCTCTTGATGACAGCATACCAATAGATCTTGGTTCTTTATCCAGTTTGCCACTCTGTGTCCTTAATTGGGACATTGAGCCCATTTACATTTAAAGTTAGTGTTGATATGTTTGGATTTGATCCTGCCATCATGATGTCAGCTGGTTGTTTTGCGGAATTTTTATGTGGTTGCTTTATAGCATCACTGGTCTGTGTACTTCAGTGTGTTTTGTAGCAG-GAGTAACAATCTTTCCTTTCCATATTTAGT-------------GCTCTTGTAAGGCAGGTATGGTGGTAACGAATTCCTTCAGCATTAGCTTGTCTAAAAAGGATCTTATTTCTCCTTTGCTTATGACGGTTAGTTTAGCCAGATATGAAATTCTGGGTTGGAATTTCTTTTCTTTAGGAATAACAAGGCCGGGCATGGTGGCTCACGCCTGTAATCTCAGCACTTTGGGAAGCCGAGGTGGGCGGATCATGAGGTCAGGAGATTGAGACC a score=-631.4 s hg18.7 26978629 3496 + 158821424 caatctcttctggtttgttgagtttctgctgagaggtctgctgtttggctttccgctgaaagtctgatgggcttccctttgtaggtgacctggcctttctctctagttgcccttgatactttttctttcattttgaccttggagaagatgattatgtgtctcaaggatgatattctcatggagtatcttacttgggttctctgcattttctgaatttgaatgttggcccatctagcaaggttagggaagttctcatggatgatatcctagaatatattttccaaattgattctattttccccatatcttccaggcacaccaatcagtagtagatttggtctctttatataatcccatatttctcagaggttttgttcattcctcttcattcttttttatctattcttgtcggcctgtcttatttcagaaagacactcttcaagctctgagattctttcctacgcttgatctattttgctattataacttgtgattgcattatgaagttcttgtactgtatttttcagctctatcagtttggttgtgttcttctctatactagctattttgtctgtcagctcctgcaatgttttaccatggcctttagcttccttgcattgggttacaacatgctcctttagctcaaggaaatttacttttatccacattctgaattccacttctgccatttcagccatctcagcctcagtccagttccagactcttgctggagatgtgatgttgtcatctggaggaaagacagcactctggctttttgagttttcagtattcttgcactga----ttttttttctcatctttgtggacttatctaccttcaatctttgaggctgctgacctttggattaggtgtttgttttttcttttaccagtctagccccttttctgtaggaatgctgcagttttctgggggtctgctccaggccctgcttgcctcagattttctagtacctggaagtatcaccagtgaaggctgcaaaacagcaaagatggcagcctgccccttctcctggaagctccctcccagggaggtatggacttgttgctggcccaaacgcacctgtagtgggtgactagagaccccagttgggaggtctcacccagtcaggagaaatgggattagagacctgcttttagaagcagtctggccacattgttgtagagcagctgtgccatgctagggtatcacttccacctggtcagcttgggctctccaaagcccacaggctggaacagctgaattgcacaaattccccaaagagcaacaatggtggcccatttcatcccaggtaggtgtgacactgtttctggtggttggctggaattccaagccattgtgtcttatcctgtgagatgccacagaaatggggcccacagaccattgctgctcagccctctggattcagccccccttcctaggagtgtggataaaggtctaacctcctgccttgccaggaagcctggagccagagtatgtaaagctcctgggcttccatgcatgcctgagcagctgctctgtcaagactccatgcagccctgtgtatcagactgaaggccctggtggagtgtggtcacgagggagtctcctgacccaagggttgcaagggtccatgggagaaacatggtttcctggggttgcaccttcactcactgctttcctgggtgggggacattcccgtggctccatgttgctcttgggtgggtcatcatcctatcatgcttttcttcattctccatagctta-----tttccttgattagtcccaacatgcgtacctggatgcttcagttgaagatgctatattaactcacctttttcaatgcttcagttgaaggtgctgtattaaccacctgtccatgagagccacagaccgtagctgcttctagtcagccatcttggccccacctcTACAATGACATTTTCATTTTATAACCTTTGGAGGTTTCATAACTAGGG-AAAGCGTGCTG----------------GTACTGATAATT---AGT-----------------AACCTTTTACAGTACTTAGTAA-AAACATTTT--------------------AATGTCttttatttattttc---------ttttttttttttttaacggagtctcgctctgtcacccaggctggaagtgcagtggtgcgatcttggctcactgc-agctccacctcccaggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccacgcccagctaatatttggtatttttggtagagatggggtttcaccatattagccaggatagccttgatctcctgacctcgtgatccacccgcttcagcctcccaaagtgctgggattacaggcgtgagccactgcgcccggtcCTTTTA-----TTTATTTTCTACGTTG--------CATATTCACTGTATGGCCTGGGAGAAAAG------------------ACGGCTGGT------TTTTAAAATTCTCAGATTGGTAATTTGT-TCCTCCTTCTAAG-TCTTTGCCTTTG-----GTTTAAAAGAAAACATA----------CCC-TTTACTTTGT--CTAA-----------GTTAAGGTATAATTTCACT--GTATCCATCAGTAAGTAGTACTTAATCTAATATAGAACTTGAATTAAGTCATAGAGTGAGGCTTTTTTGCTTTA--------------AGAA-AAAAATCTTACTGCTTTTTCAAAA------CAACCCAGCTTGTT-TCTTGTTACT-----AT-AATAAT---CCATACTTATAATTACTCATCTAACCTAA-AG---GAAGACAA-------GAGAATCTGGTGTTTTGTATGTAAG-------ATCTATAAAACCTACAGTCAATTAATT------TCACCCTGTAATAATTGTAGATAATCTGAA-AACATG-----AAGTAAT-TTATTT---ATAATC-CAAAAGGATCATGTAG--GTTACCATGTTTATGTGATCAAATTTTAG------------T--TGTTATAAATAGATC----ATCTACAAA---TAAATCTTTAAAAATAATTATCAAGT----TTTTTTCTCTGCCTTTCACTTTGTGTTACTTCATACAGAATAAAAT-----CTGTATAGCTATAATCTGGCATTGATTGAATTGCCTCATTGTGTCTACAGGCATTCCCCCAAATATACCACA-------AATATACCACATGCTCTTCCATATCATATT-CCCCC-AAATATACCACATG---CTCTT-C-CATATCATATTCCC--CACTTTCTGGGCACTTTCCCT-------AAAAGACAg-----atcttggaa-catgttag---tttttctgcct--------------agaatgc----cttcc----ctattgttttt-t------agcaaagtcccatggatacc-ttaagtcttacctttaatgctac--------------------------------------------------------------------------cactacagtaa------agct----------ttccctatctcc-accaagca----aagtgaccacacgttttgcactt-tg---ctcagtaggatttatctgagtttatctgtgtttatc-----------------tgagtttattgtgttaat--tcatctgagtttac--tgtt----------tatctgttt----attagatcctgagtttcttgatggcagatactgt----------------------------gttttcttcatattcatgtttcc-agaaa----ct-----aattatagcacttac-ctcaaacaagtgctcactaaatatttatggaattaatggat-----TTATTTTCATGGTTC---------------CCTCTCGTCATCCAAAACAGGACGCCA s panTro2.7 27315550 3511 + 160261443 caatctcttctggtttgttgagtttctgctgagaggtctgctgtttggctttccgctgaaagtctgatgggcttccctttgtaggtgacctggcctttctctctagttgcccttgatactttttctttcattttgaccttggagaagatgattatgtgtctcaaggatgatattctcatggagtatcttacttgggttctctgcattttctgaatttgaatgttggcccatctagcaaggttagggaagttctcatggatgatatcctagaatatattttccagattgattctattttccccatatcttccaggcacaccaatcagtagtagatttggtctctttatataatcccatatttctcagaggttttgttcattcctcttcattcttttttctctattcttgtcggcctgtcttatttcagaaagacactcttcaagctctgagattctttcctacgcttgatctattttgctattataacttgtgattgcattatgaagttcttgtactgtatttttcagctctatcagtttggttgtgttcttctctatactagctattttgtctgtcagctcctgcaatgttttaccatgacctttagcttccttgcattgggttacaacatgctcctttagctcagggaaatttacttttatccacattctgaattccacttctgccatttcagccatctcagcctcagtccagctccagactcttgctggagatgtgatgttgtcatctggaggaaagacagcactctggctttttgagttttcagtattcttgcactga----ttttttttctcatctttgtggacttatctaccttcaatctttgaggctgctgacctttggattaggtgtttgttttttcttttaacagtctagccacttttctgtaggaatgctgcagttttctgggggtctgctccaggccctgcttgcctcagattttctagtacctggaagtatcaccagtgaaggctgcaaaacagcaaagatggcagcctgccccttctcctggaagctccctcccagggaggtatggacttgttgctggcccaaacgcacctgtagtgggtgactagagaccccagttgggaggtctcacccagtcaggagaaatgggattagagacctgcttttagaagcagtctggccacattgttgtagagcagctgtgccatgctagggtatcgcttccacctggtcagcttgggctctccaaagcccacaggctggaacagctgaattgcacaaattccccaaagagcaacagtggtggcccatttcatcccaggtaggtgtgacactgtttctggcggttggctggaattccaagccattgtgtcttatcctgtgagatgccacagaaatggggcccacagaccattgctgctcagccctctggattcagccccccttcctaggagtgtggataaaggtctaacctcctgccttgccaggaagcttggagccagagtatgtaaagctcctgggcttccatgcatgcctgagcagctgctctgtcaagactccatgcagctctgtgtatcagactgaaggccctggtggagtgtggtcacgagggagtctcctgacccaagggttgcaagggtccatgggagaaacatggtttcctggggttgcaccttcactcactgctttcctaggtgggggacattcccgtggctccatgttgctcttgggtgggtcatcatcctatcatgcttttcttcattctccatagctta-----tttccttgattagtcccaacatgcatacctggatgcttcagttgaagatgctatattaactcacctttttcaatgcttcagttgaaggtcctgtattaaccacctgtccatgagagccacagaccatagctgcttctagtcggccatcttggccccacctcTACAATGACATTTTCATTTTATAACCTTTGGAGGTTTCATAACTAGGG-AAAGCGTGCTG----------------GTACTGATAATTACCAGTACCTTTTTTACTGTAAAAACCTTGTACAGTACTTAGTAA-AAACATTTT--------------------AATGTCttttatttattttctt-------ttttttttttttttaacggagtctcgctctgtcacccaggctggaagtgcagtggtgcgatctcggctcactgc-agctccgcctcccaggttcacaccattctcctgcctcagcctcccgagtagctgggactacaggcgcccaccaccacacccagctaatatttggtatttttggtagagatggggtttcaccatattagccaggatagccttgatctcctgacctcgtgatccacccgcttcagcctccaaaagtgctgggattacaggcgtgagccactgcgcccggtcCTTTTA-----TTTATTTTCTATGTTG--------CATATTCACTGTATGGCTTGGGAGAAAAG------------------ACGGCTGGT------TTTTAAAATTCTCAGATTGGTAATTTGT-TCCTCCTTCTAAG-TCTTTGCCTTTG-----GTTTAAAAGAAAACATA----------CCC-TTTACTTTGT--CTAA-----------GTTAAGGTATAATTTCACC--ATATCCATCAGTAAGTAGTACTTAATCTAATATAGAACTTGAATTAAGTCATAGAGTGAGGCTTTTTTGCTTTA--------------AGAA-AAAAATCTTACTGCTTTTTCAAAA------CAACCCAGCTTGTT-TCTTGTTACT-----AT-AATAAT---CCATACTTATAATTACTCATCTAACCTAA-AG---GAAGACAA-------GAGAATCTGGTGTTTTATATGTAAG-------ATCTATAAAACCTACAGTCAATTAATT------TCACCCTGTAATAATTGTAGATAATCTGAA-AACATG-----AAGTAAT-TTATTT---ATAATC-CAAAAGGATCATGCAG--GTTACCATGTTTATGTGATCAAATTTTAG------------T--AGTTATAAATAGATC----ATCTACAAA---TAAATCTTTAAAAATAATTATCAAGT----TTTTTTCTCTGCCTTTCACTTTGTGTTACTTCATACAGAATAAAAT-----CTGTATAGCTATAATCTGGCATTAATTGAATTGCCTCATTGTGTCTACAGGCATTCCCCCAAATATACCACA-------AATATACCACATGCTCTTCCATATCATATT-CCCCC-AAATATACCACATG---CTCTT-C-CATATCAtattccc--cactttctgggcactttccct-------aaaagacag-----atcttggaa-catgttag---tttttctgcct--------------agaatgc----cttcc----ctattgttttt-t------agcgaagtcccatggatacc-ttaagtcttacctttaatgctac--------------------------------------------------------------------------cactacagtaa------agct----------ttccctatctcc-accaagca----aagtgaccacatgttttgcactt-tt---ctcagtaggatttatctgagtttatctgtgtttatc-----------------tgagtttattgtgttaat--ttatctgagtttac--tgtt----------tatctgttt----attagatcctgagtttcttgatggcagatactgt----------------------------gttttcttcatattcatgtttct-agaaa----ct-----aattatagcacttac-ctcaaacaagtgctcactaaatatttatggaattaatggat-----TTATTTTCATGGTTC---------------CCTCTCGTCATCCAAAACAG------- s rheMac2.3 97164569 3440 - 196418989 CAATCTCTTCTGACTTGTTGGGTTTCCACTGAGAGGTCTGCTATTTGGCTTTCCACTGAAAGTCTGATAGGCTTCCCTTTGTAGGTGACCTGGCCTTTCTCTCTAGCTGCCCTTGATACTTTTTCTTTCATTTTGACCTTGGAGAAGATGATTATGTG-CTCAGGGATGATATTCTCATGGAGTATCTTACCTGGGTTCTCTGCATTTTCTGAATTTGAATGTTGGCCCATCTAGCAAGGTTAGGGAAGTTCTCATGGATGATATCCTAGAATATCTTTTCCAAATTGGTTCCATTTTCCCCATATCTTTCAGGCACACCAATCAGTAGTAGATTCAGTCTCTTTGTGTAATCCCATATTTCTCAGAGGTTTTGTTCATTCCTCTTCATTCTTTTTTCTCTATTCTTGTCTGCCTGTCTTATTTCAGAAAGACACTCTTCAAGCTCTGAGATTCTTTCTTCTGCTTGGTCTATTCTGCTATTAAAACTTGTGATTGCATTATGAAGTTCCTGTACTGTATTTTTCAACTCTATTGGTTTGGTTATGTTCTTCTCTATACTGGTTATTTTGTCTGTCAGCTCCTGCAATGTTTTACCATGACCTTTAGCTTCCTTGCATTGGGTTACAACATGCTCCTTTAGCTCAGAGAAATTTACTTTTATCCATATTCTGAATTCTACTTCTGCCATTTCAGCCATCTCAGCCTCAGTCCAGTTCCAGATTCTTGCTGGAGATGTGATGTGGTCATCTGGAGGAAAGACAGTACTCTGGCTTTTTGAGTTTTCAATTTTCTTGCACTGATTTTTTTTTTTTCTCATCTTTGTGGACTTATCGACCTTCAATCTTTGAGGCTGCTGACCTTTGGATGAGGTGTTTGCTTTTTCTTTCAACAGTCTGGCCACTTTTCTGTAGGGCTACTGCAGTTTTCTGGGGGTCTGCTCCAGGCCCCAATTGCCTCTGATTTTCCAGTACCTGGAAGCATCACCAGTGAAGACTGCAAAACAGCAAAGACGGCAGCCTGCCCCTTCTACTGGAAGCTCCCTCCTAGGGAGGTATAGACCTGTTGCCAGCCCAAACACACCTGTAGTGGGTGGCTGGAGACTCCGGTTGGGAGGTTTCACCCAGTCAGGAGGAATGGGATTAGAGACCTGCTTTTAGAAGCAGTCTGGCCACACTGTTGTAGAGCAGCTGTGCCATGCTGGGGTATCGCTTCCACCCAGTCAGCTTGG--------AAGCCCACAGGCTGGAACAGCTGAATTGCACAAATTGCCC-AATAGCAGCAGTGGTGGCCCATTTCATCCCAGGTAGGTGTGACACTGTTTCTGGTGGTTGGCTGGAATTCCAAGTCAGTGTGTCTTATCCTGTGAGATGCCAAAGAAATGGGGCCCACAGACCATTGCTG--------------TTCAGCCCCCCATCCTAGGAGTGTGGATAAAGGTCTAACCTCCTGCCTTGCCAGGAGGCCTGGAGCCAGAGTATGTAAAGCTCCTGGGCTTCCATGCGTGCCTGAGCAGCTGCTCTGTCAAGACTCCGTGCAGCCCTGTGTATCAGACTGAAGGACCTGGTGGAGTGTGTTCATGAGGGAGTCTCCTGACCCAAGTGTTGCAAGGGTCCATGGGAGAAACAT-GTTTCCTGGGGTTGCACCTTCACTCACTGCTTTCCTGGGTGGGGGATGTTCCCCTGGCTCCATGTTGCTCTTGGGTGAGTCACCATCCTATCGTGCTTTTCTTCGTTCTCCATAGGTTAAGTTGTTTCCTTGATTAGTCCCAATGCGCATACCTGGATACTTCAGTTGAAGATGCTATATTAACTCACTTTTTTCGATACTTCAGTTGAAGGTGCTGTATTAACCACCTCTCCATGAGAGCCACACACTATAGCTGCTTCTAGTCAACCACCTTGGCCCCACCTCTGCAATAACATTTTCGTTTTATAACCTTTGGAGGTTTCATGACTAGGG-AAAAGGTGCTG----------------GTACTGATAATT---AGT-----------------AACCTTTTACAGTACTTAGTAA-AAATATTTT--------------------AATGTCTTTTCTTTATTTTCTTCTTCTTCTTTTTTTTTTTTTTGACAGAGTCTCACTCTGTCGCACAGGCCGG-AGTGTAGCGGCACGATCTCGGCTCACTGCAAGCTCCGTCTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTCGCTGGGACTACAGGCGCCCGCCACCACGCCCAGCTAATTTTTTGTATTTTTGGTAGAGATGGGGTTTCACCATATTAGCCAGGATGGTCTTGATCTCCTGACCTCCTGA--------CCTTGGCCTCCCAAAGTGCTGGGATTACAGCTGTAAGCCACTGTGCCAAGTCCTTTTA-----TTTATTTTCTATGTTG--------CATATTCACTGTATGGCCTGGGAGAAAAG------------------AGGACTGGT------TTTTAAAATTCTGAGACTGGTAATTTGT-TCCTCCTTCTAAG-TCTTTGCCTTTG-----GTTTAAAAGAAAACATA----------CCC-TTTACTTTGT--CTAA-----------GTTAAGGAATAATTTTACC--ATATCCATCAGTAAGTAGTACTTAATCTAATATAGAACTTGAATTAAGTCATAGAGTAAGGCTTTTTTGCTTTA----------------AA-AAAAATCTTACTGCTTTTTCAAAA------CAACCCAGTTTGTT-TCTTGTTACT-----AT-AATAAT---CCATACTTATAATTACTCATCTAACCTAA-AG---GAAGACAA-------GAGAATCTGGTGTTTTGTATGTAAG-------ATCTATAAAGGCTACAGTCAATTAATT------TCATCCTGTAATAATTGCAGATAATCTGAA-AACATG-----AAGTAAT-TTATTT---ATAATC-CAAAAGCATCATGCAG--GTTACCATGTTTATGTGATCAAATTTTAG------------TTCTGTTATAAATAGATC----ATCTACAAA---TAAATCTTCAAAAATAATCATCAAGTT-TATTTTTTCTCTGCCTTTCACATTGTGTTACTTCCTATAGAATAAAATCAAACCTTCTTAGCTATAATCTGGCA-TGACTGAATTGCCTCATTGTGTCTCCAGGC------------------------------------------------------ATT-CCCCT-GAATATACCACATG---CTCCT-C-CATATCATATTCCC--CACTTTCTGAGTACTTTCCCT-------AAAAGACAG-----ATTTCGGAA-CATGTTAG---TTTTTCTGCCT--------------AGAATGC----CTTCC----CTATTGTTTTT-T------GGCAAAGTCCCATGGATAAC-TTAAGTCTCACCTTTAATGCTAC--------------------------------------------------------------------------CACTACAGTAA------AGCT----------TTCCCGATCTCC-ACCAAGCAAAGTAAGTGACCACATGTTTTGCACTT-TT---CTCAGTAGGATTTATCTGAGTTTATCTGTGTTTACC-----------------TGAGTTTATTGTGTTAAT--TTATCTGAGTTTACTGTGTT----------TATCTGTTT----ATTAGATCGTGAGTTTCTTGATGGCAGGGACTGT----------------------------GTTTTCTTCATATTCATGTTTCC-AGAAA----CT-----AATTATAGCACTTAC-CTCAAACAAGTGCTCACTCAATATTTATGGAATTAATGGAT-----TTATTTTCATGGTTC---------------CCTCTTGTCATCCAAAACAG------- a score=-298.8 s hg18.7 26982125 3020 + 158821424 TATAACTGTCCCAGATCACTCATGTCTACACAGGAAGCATAAACCAAT---TGAT--------GGCTAC-AGACAG-AGG--GTATAAAATGACCCAGAAGGCCAAA---CAGA-CCCAAA-C-AGACTC-TATTGGGAAGT--------------CTGTCTCGG---C--CAGTGAACAGGAAGTTCA-C-AAAAATAAC-TGTTTCTTTCAAAACGCAACATTTCTCCGTCACACAAAGGG-----------TCTCAGTTAG-TTGACAGCC-----TTTAAAACATAAGTTCTTTATTCCAAATTATATAATTGGCATGGAA-AGAAAAATGACCTTGGAATATTAATCT------T-A--A-AA-ATGTAAGTTTTCTTTTGTTTAAA-------------AA------------G-------------AAAATAggctgggggtggtggctcacgtctgtaatcccagcattttgggaggctgaggtgggcaaatcacctga------------gctcaggagttcgagacc--aacctgggcaataggggcaaaaacccatctctactaaaaatacaaaaaattagccaggcatggtggtatatg--cctgtaatcctagctactcaggaggctgagggagga-gaatcgc----------ttgaacctgggaggcagaggttgcagtgagcccagatagtgtcactgcactccagcctgggcaacagagctagattccttctaaaaa--aaaaataataaaataaataaaaaTTT-----------------------AAAGAATAAAAATAAATAAAAGGAAAATAAC-GAGAAAACTAAAGTAAGGAAAGGAGCCAAGAAAAAGTATCCCAAGTTATCTTGAAATTGAATAAGTGATTTCAACTTTTCAGACTGCCTAAGAA-------------CAAAATGCAATAGAAGTAACAAAAAC-AA---CCCCTT--------------TTT-T-C----TCTTATGTg--atccac----tcttactaaga------------------------------------------------------------------------------atataaat---------------------aaata-------aaccagacagggtagcatgtgcctgtagtcccacatacttgggaggct-------gaggatagcatgagcccaggagttcaaagttgcagtgag-ctaagatcatactactgcaatccagcctaggtgacagagagagataacttctcaaaaaaacaaacaaaaaCAGAGAGCTAGAAGTTGGCTGCCTGCTTTGCTGCT--T-----------tgaaaactgattgtataaattggagttatcttgtcatactcaaata----taagttgagagacc--aaggggaggaaaagaaaaacacttggtgggtacaagcacctacccaggaattatctcacaagccagttactacaa-gacctgctaaaactgtaagaccagttttacctagtagctgctgaaatgaactgtcataatgttaagactagttttacctaccactgtcactcaccaatcagcttgcccactcctggcaatttccacagggccagt-gagttttctttcaaaacaatacataatatttctttttctaataaaacccccaatgttttctttgtttttcggacatat---------ccctggtctgtgtatatgctctgaattgcaaatctgttttcccaaataaaacattttgttttgagatacttctctacattttatttgactttgacaCTGCCTATCACCTAT-AGCTCAGATGCTGTTGTTTACTACAAGTATGCTCTAAGATCTTCAGAAAGATGTGGGAATTCCGCTCTAATCTATTAACAAATGCTTA-AGGAGCACCTCT-A-GAAAAAGCACGTCATGAATTTACAGAAA---------GGAAGTTAACATCAGGGTCATGAGCAGGCTGATTTACCATAAAACAAAGGAAGCTTAAGtttct--------ttttttgttgttttgtttttgagacgtagtttcgctcttgttgccccggctggagtgcaatggcatgatctcggctcactgcaacctccggctcctggattcaagcgattctccttcctcagcctgccgagtagctggtattacaggcgcccaccagcatatccagctagtttttgtagttttagtagaga--tgggggtttcaccatgttggccaggctggtcttgaactcttgacctcaggtgatccacccacctcagcctcccaaagtgctgggcttacaggtgtgagccaccacacccagctCAGGAAGTTTAAGTTTctatcaatgtgtttacatgg-tcatacaattttgtaaaatttgcaaaaataagatact--ttacttcaatcaagtaaggctactgactccttccactctgactttctttctatcatacttcctctcatgtggatgagtgctggagtggccaca-aacattttgagattcgaggggaagctaagttggt-ggtatatttagttttagtttagtacagt--gtatatgtggtttgcaattacttc-cacatataagtaagttat-taccagctgttcccaacctaagaatgactttcagggatatatctaccac----tgtgctaactaagccaatgccataat---atgacagtgct-ggctagagcttgtttcaccatatgTTTG-ATACTATGATGAAAGATATTTCTCACTGT--TCCTCAATTATGCTTGCACTGCGTCCTTG--GCCTCTGCtcttctctttctttctttgtttctttctttcttcctttctttcttttttc----------------tttctctctctctctctttctgtctcttttcttttttctttctctctctctctctttctctctcttttctt---ttttcttttctgacaaggtctcactctgttgctcaagctggagtgcggtggcttaattatagcttactacagtcctgaactccagggctcaagcaatcctcccacctcagcctcccaaatatctgggactataggcgtgcaccaccatgcctagcta-------atttttattttgatt-ttatttatttatttatatatttttttgagatggagtctgtctctgtcacccaggaaggattgcagtggcatgatctcagctcactgcaacctctgcctcccaggttccagcgattctcctgcctcagccttctgagtagctgggattacaggtgcttgccatcacaccaggcgaatttttgtat------tagagatggggtttcaccgtgttggccaggttggtctcaaactcctgacctca-gtgatctgcccgcctcagcctcccaaagtgctgagattacaggcgt s panTro2.7 27319068 2977 + 160261443 TGTAACTGTCCCAGATCACTCATGTCTACACAGGAAGCATAAACCAAT---TGAT--------GGCTAC-AGACAG-AGG--GTATAAAATGACCCAGAAGGCCAAA---CAGA-CCCAAA-C-AGACTC-TATTGGGAAGT--------------CTGTCTCGG---C--CAGTGAACAGGAAGTTCA-C-AAAAATAAC-TGTTTCTTTCAAAACGCAACATTTCTCCGTAACACAAAGGG-----------TCTCAGTTAG-TTGACAGCC-----TTTAAAACATAAATTCTTTATTTCAAATTATATAATTGGCATGGAA-AGAAAAATGACCTTGGAATATTAATCC------T-A--A-AA-ATGTAAGTTTTCTTTTGTTTAAA-------------AA------------G-------------AAAATAggctgggggtggtggctcacgtctgtaatcccagcattttgggaggctgaggtgggcaaatcacctga------------gctcaggagttcgagacc--aacctgggcaataggggcaaaaacccatctctactaaaaatacaaaaaattagccaggcatggtggtatatg--cctataatcctagctactcaggaggctgagggagga-gaatcgc----------ttgaacctgggaggcagaggttgcagtgagcccagatagtgtcactgcactccagcctgggcaacagagctagattccttctaaaaaataataataataaaataaataaaaaTTT-----------------------AAAGAATAAAAATAAATAAAAGGAAAATAAC-GAGAAAACTAAAGTAAGGAAAGGAGCCAAGAAAAAGTATCCCAAGTTATCTTGAAATTGAATAAGTGATTTCAACTTTTCAGACTGCCTAAGAA-------------CAAAATGCAATAGAAGTAACAAAAAC-AA---CCCCTT--------------TTT-T-C----TCTTATGTg--atccac----tcttactaaga------------------------------------------------------------------------------atataaat---------------------aaata-------aaccagacagggtagcatgtgcctgtagtcccacatacttgggaggct-------gaggatagcatgagcccaggagctcaaagttgcagtgag-ctaagatcatactactgcaatccagcctaggtgacagagagagataacttctcaaaaaaacaaacaaaaaCAGAGAGCTAGAAGTTGGCTGCCTGCTTTGCTGCT--T-----------tgaaaactgattgtataaattggagttatcttgtcatactcaaata----taagttgaaagacc--aaggggaggaaaagaaaaacacttggtgggtacaagcacctacccaggaattatctcacaagccagttactacaa-gacctgttaaaactgtaagaccagttttacctagtagctgctgaaatgaactgtcataatgttaaaactagttttacctaccactgtcactcaccaatcagcttgcccactcctggcaatttccacagggccagt-gagttttctttcaaagcaatacataatatttctttttctaataaaacccccagtgttttctttgtttttcggacatat---------ccctggtctgtgtatatgctctgaattgcaaatctgttttcccaaataaaacattttgttttgagatacttctctgcattttatttgactttgacaCTGCCTATCACCTAT-AGCTCAGATGCTGTTGTTTACTACAAGTATGCTCTAAGATCTTCAGAAAGATGTGGGAATTCTGCTCTAATCTATTAACAAATGCTTA-AGGAGCACCTCT-A-GAAAAAGCACGTCATGAATTTACAGAAA---------GGAAGTTAACATCAGGGTCATGAGCAGGCTGATTTACCATAAAACAAAGGAAGCTTAAGtttct--------ttttttgttgttttgtttttgagacgtagtttcgctcttgttgccctggctggagtgcaatggcatgatctcggctcactgcaacctccgactcctggattcaagcgattctcctgcctcagcctcccgagtagctggtattacaggcgcccaccagcatatccagctagtttttgtagttttagtagaga--tgggggtttcaccatgttggccaggctggtcttgaactcttgacctcaggtgatccacccacctcagcctcccaaagtgctgggattacaggtgtgagccaccacacccagctCAGGAAGTTTAAGTTTctatcaatgtgtttacatgg-tcatacaattttgtaaaatttgcaaaaataagatact--ttacttcaatcaagtaaggctactgactccttccactctgactttctttctatcatacttcctctcatgtggatgagtgctggagtggccaca-aacattttgagattcgaggggaagctaagttggt-ggtacatttagttttagtttagtacagt--gtatatgtggtttgcaattacttc-cacatataagtaagttat-taccagctgttcccaacctaagaatgactttcagggatatatctaccac----tgtgctaactaagccaatgccataat---atgatggtgct-ggctagagcttgtttcatcatatgTTTG-ATACTATGATGAAAGATATTTCTCACTGT--TCCTCAATTATGCTTGCACTGCGTCCTTG--GCCTCTGC------------------Gtttctttctttctttctttctttctttgtt---------------------------tctttctttcttcctttcttcttttt----------------tctttctctctcttttctt---ttttcttttctgacaaggtcttactctgttgctcaagctggagtgcggtggcttaattatagcttactacagtcccgaactccagggctcaagcaatcctcccacctcagcctcccaaatatctgggactataggcatgcaccaccatgcctagcta-------atttttatttttatt-ttatttatttatttatatatttttttgagatgaagtctgtctctgtcacccaggaaggattgcagtggcatgatctcagctcactgcaacctccgcctcccaggttccagcgattctcctgcctcagccttctgagtagctgggattacaggtgcctgccatcacaccaggctaatttttgtat------tagagatggggtttcaccgtgttggccaggttggtctcaaactcctgacctca-gtgatctgcccacctcagcctcccaaagtgccgagattacaggcgt s rheMac2.3 97168016 3003 - 196418989 TGTAACTGTCCCAGATCACTCATGTCTACACAAGAAGCATAAACCAAT---TGAT--------GGCTAC-AGACAG-AGG--GTGTAAAATGACCCAGCAGGCCAAA---CGAG-CCCAAA-T-AGACTC-TGTTGGGAAGT--------------CTGTCTCCG---C--CAGAGAACAGGAAGTTCA-CAAAAAATAAC-TGTTTCTTTCAAAATGCAACATTTCTCCGTAACACAAAGGG-----------TCTCAGTTAG-TTGACAGCC-----TTTAAACCGTAAGTTCTTTATTCCAAATTATATAATTGGCATGGAA-AGAAAAATGACCTTGGAATATTAATCT------T-A--A-AA-ATGTAAGTTTTCTTTTGTTTAAA-------------AA------------G-------------AAAATAGGCCAGGGGTGGTGGCTCACATCTGTAATCCCAGCATTTTGGGAGGCCGAGGTGGGCAAATCACCTGA------------GCTCAAGAGTTCAAGACC--AACCTGGGCAATA-GGGCAAAAACCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCATGGTGGTATATG--CCTGTAATCCTAGCTACTCACGAGGCTGAGGGAGGA-GAATCAC----------TTCAATCTGGGAGGCAGAGGGAGCAGTGAGCCCAGACGATGTCACTGCACTCCAGCCTGGACAACAGAGCAAGACTCCTTCTAAAAA-TAATAATAATAAAATAAATAAAAATTTTAAAAATAAAAATAAAATAAATAAAAGGAAAAAAATAAATAAAAGGAAAATAAT-GAGAAAACTAAAGTAAGGAAAGGAGCCAAAAGAAAGAATCTGAAGTTATCTAGAAATTGAATAAGTGAGTTCAACTTTTCAGACTGCCTAAGAA-------------CAAAATGCAATAGAAGTAACAAAAAC-AG---CACCTT--------------TCT-T-C----TCTTATATG--ATCCAC----TCTTACTAAG-------------------------------------------------------------------------------ATATAAAT---------------------AAATA-------AACCAGACAGGGTAGCACGTCCCTATAGT-TCACATACTTGGGAGGCT-------GAGGGCAGCATGAGCCCAGGAGTTCAAAGTTACAGTGAGTCTAAGATCATACCACTGCAAGCCAGCCTAGCTGGC----CAAGATACCTTCTT-AAAAAACAAACAAAAACAGAGAGCTAAAAGTTGGCTGCCTACCTGGCTGCT--TTATTCCTGCTGTGAAAACTGATTGTATGAGTTGGAGTTATCTTGTCATATCCAAATA-----AAATTGAGAAACC--AAGGGGAGGAAAAGAAAAGCACTTGGTGGGTACAAGCACCTACCCAGGAATTATCTCACAAGCCAGTTACTAAAA-GACCTGCTATAAC-GTAAGACTAGGTTTACCTAGTAGCTGCTGAAATGAACTGTCATAATGTTAAGACTTATTTTACCTACCACTGTCACTCACTAATCAGCTTGCCCACGCCTGACAACTTCCACAGGGCCAAT-GAGTTTTCTTTCAAAACAATACATAATATTTCTTTTTCTATTAAAACTCCCAACGTTTTCTTTGTTCTTCGGACATAT---------CCCTGGTCTGTGTATATGCTCTGAATTGCAAATCTGTTTTCCCAAATAAAACATTTTATTTTGAACTACTTCTCTACATTTTATTTGACTCTGACACTGCCTATCACCTAT-AGCTCAGATGCTGTTGTTTACTACAAGTATGCTCTAAGATCTTCGGAAAGATGTGGGAATTCTGCTCTAATCTATTAACAGATGCTTG-AGGAGCACCGCT-A-CAAAAAGCACATCATGAATTTACAGAAA---------GGAAGTTAGCATCAGGGTCATGAGCAGGCTGATTTACCATAAAACAAAGGAAGCCTAAGTTTCT--------TTTTTCGTTGTTTTGTTTTTGAGACAGAGTTTCGCTCTTGTTGCCTCTGCTGGAGTGCAATGGCAGGATCTCAGCTCACTGCAACCTCCGACTCCCGGATTCAAGCGATTCACCTATCTCAGCCTCCCGAGTAGCTGGAATTACAGGCACCCACCACCATACCCAGCTAATTTTTGTATTTTTAGTAAAGA--C-GGGGTTTCACCATGTTGGCGAGGCTGGTCTTGAACTCTTGACGTCAGGTGATCCACCCACTTCGGCCTCTCAAAGTGCTGGGATTACAGGTGTGAGCCATCACGCCCAGCTCAGGAAGCTTAAGTTTCTATCAGTGTGTTTACACAG-T----CAATTTTGTAAAATTTGCAAATGTAAGATATT--TAACTTCAATCAAGTAATGCCACTGACTCCTTCCACTCTA----TCTTTCTATCACACTTCCTCTCATGTGGATGCGTGCTGGAGTGGCTACA-AACATTTTGAGATTCGAGGGGAAGCTAGGTTGGT-GGTACATTTAGTTTTAGTTTAGTACAGT--GTATATGTGGTTTGCAATTACTTC-TACATATAAGTAAGTTAT-TACCAGCTGTTCCCACCCTAAGAATTACTTTCAGGGATATATCTACCAC----TGTGCTAACTAAGCCAATGCCATAAT---ATGAAGGTGCT-GGCTAGAGCTTGTTTCACCATATGTTTG-ATAGTATGATGAAATATATTTCTCACTGT--TCATCAGTTATGCTTGCAATACATCCTCTGCGCCTCTGC------------------TTTTCTTTGT---TTTCTTTCTTTCCTTT-----------------------------CCTTTCTTTC---CTTCCTTTCCTTC----------------TCTTTCTCTCTTTTTTCTTTTCTTTCCTTTTCTGACAAGGTCTCACTCTGTTGCTCAGGCTGGAGTGTGGCGGCTTAATTAAAGCTTACTACAGTCTCAAACTCCAGGGCTTAAGCAATCCTCCCATCTCAGCCTCCCAAGTATCTGGGCCTATAGGCGTGCACCACCATGCGTAGCTATTTATTTATTTATTTTTTTATTATTATTTACTTATTGATTTA--TTTTTGAGATGGAGTCTCGCTCTATCACCCAGGAAGGACCGCAGTGGCATGATCTCAGCTCACTGCAACCTCCGCCTTCCAGGTTCCAGCGATTCTCCTGCCTCAGCCTTCTGAGTAGCTGGGATTACAGGTGCCCGCCATCACGCCAGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTGGCCAGGTTAGTCTCAAACTCCTGACCTCAGGTGATCTGCCCACCTCATCCTCCCAAAGTGCTGAGATTACAGTCGT a score=-275.4 s hg18.7 26985145 317 + 158821424 gagccactgtgcctggccactattttttttttattt---------------------------------------------tttgtagagatggggtcg-----cgctttgttgtagaggctgtctcaaa--------------ctcca----------------------------------------------------------------ggcttcag---gcgatcctcctgccttggcctcccaaagtgctaggattacaagtatgagccaccacgcccagcctgcttttgttatttcttccacctagccttgca--------ttcccacttcctcaaacaaaaatcctacatgtttttcaagatcagatcaaatgccacct-cttcaacaaagccttccca--agtatggaataaa---tctctcca---tctg------ttttccatcaaattgctttt--------------------------------------tgttt s panTro2.7 27322045 317 + 160261443 gagccactgtgcctggccactattttttttttattt---------------------------------------------tttgtagagatggggtcg-----cgctttgttgtcgaggctgtctcaaa--------------ctcca----------------------------------------------------------------ggcttcag---gcgatcctcctgccttggcctcccaaagtgctaggattacaagtatgagccaccacgcccagcctgcttttgttatttcttccacctagccttgca--------ttcccacttcctcaaacaaaaatcctacatgtttttcaagatcagatcaaatgccacct-cttcaacaaagccttccca--agtatggaataaa---tctctcca---tctg------ttttccatcaaattgctttt--------------------------------------tgttt s rheMac2.3 97175919 283 - 196418989 GAGCCACCATGCCCAGCCTGCTTTTGTTATTTCTTCCACCTAGCCTTGCATTCCCACTTCCTCAAACAAAAATCCTACATGTTTTTCAAGATCAGATCAAATGCCACCTCTTCAACGAAGCCTTCCCAAGTATGGAATAAATCTCTCCATCTGTTTTCCATGAAATTGCTTTTTGTTTGTGCCTCTATTTAAAACAAGTAGGCCGGGCGCTGTGGCTCAAGCCTGTAATCCCAGCACTTTGGGAGGCCGAGACGGGCGGATCACGAG-----GTCAGGAGATCCAGAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=464.4 s hg18.7 26985462 382 + 158821424 gtgtctctatttta-----aaacaa----gtaaaccct----atgttgta-------------ttttagttatttgttaac-----atgac--tatctcttc--cactag---actgtaaactttt------------------taa------------gTA--TT--------------------------------------------------------------------------AC--CTAACTTT-----------------------ATATTTCTCACAGCATCAAACATGATATCTAAATCATGATGCCTAGACAATGTTGATTTGAACTTAATTTT-TTAACTTGG-TC--TGCTCT----TTTGTTAAC-ATGAAACTGA-AAATATCTA-TTTGTCTAAT-CCATTATT----TTTG-ATATT-AGAACAGAGCTTCCCCCA----------CAAAGTTATAGAGATT-ATAGAatgtatat-ataa----------------------------atatatat--------atatacac----------------------a----------------------catata--c--atatCATTCATAT---GT-AAACAA---TTAACAATCTAATAATCTTAAGTCT-TAGTGGCTTCAC s panTro2.7 27322362 378 + 160261443 gtgtctctatttta-----aaacaa----gtaaaccct----atgttgta-------------ttttagttatttgttaac-----atgac--tatctcttc--cactag---actgtaaactttt------------------taa------------gTA--CT--------------------------------------------------------------------------AC--CTAACTTT-----------------------ATATTTCTCACAGCATCAAACATGGTATCTAAATCATGATGCCTAGACAATGTTGATTTGAACTTAATTTT-TTAACTTGG-TC--TGCTCT----TTTGTTAAC-ATGAAGCTGA-AAATATCTA-TTTGTCTAAT-CCATTATT----TTTG-ATATT-AGAACAGAGCTTCCCCCA----------CAAAGTTATAGAGATT-ATAGAatgtatat-ataa--------------------------------atat--------atatacac----------------------a----------------------catata--c--atatCATTCATAT---GT-AAACAA---TTAAAAATCTAATAATCTTAAGTCT-TAGTGGCTTCAC s rheMac2.3 97176449 378 - 196418989 ------------TA-----AAACAA----GTAAACACT----ACGTTGTA-------------TTTTAGTTATTTGTTAAC-----ATGACTTTATCTCTTC--CACTAG---ACTGTAAACTTTT------------------TAAGAGCCACAAAATGTA--TC--------------------------------------------------------------------------AC--TTAACTTT-----------------------ATATTTCTCACAGCATCAAATATGGTGTCTAAATCACGATGCCTAGACAATGCTGATGTGAACTGAATTTT-TTAACCTGG-TG--TGCTCT----TTTGTTAAC-ATGAAGCTGA-AAATATCTA-TTTGTCTAAT-CCATTATT----TTTG-ATGTT-AGAACAGGGCTTCCCCCA----------CAAAGATATAGAGATT-ATAGAAAGTATAT-ATAA--------------------------------ATAT--------ATATACACATAGAT----------------A----------------------TATATG--T--ATATCATTCAAAT---GT-AAACAG---TTAAAAATCTAATAATCTTAAGTCT-TAGT-------- a score=105.6 s hg18.7 26985844 64 + 158821424 AAAATGAAGTTCTAGGTAGT-AAGTTAATCTTTGTAAGACTAAGGGCTT-----------AAAAGA-AAAGACCACg s panTro2.7 27322740 48 + 160261443 AAAATGAAGTTCTAGGTAGT-AAGTTAATCTTTGTAAGACTAGGGGCTT---------------------------- s rheMac2.3 97176835 48 - 196418989 AAAATGAAGTTCTAGGTAGT-AAGTTAATCTTTGTAAGACTAAGAGCTT---------------------------- a score=-70.8 s hg18.7 26986037 147 + 158821424 aattagccgggcgtagtggcgggcgcctgtagtcccagctacttgggaggctgaggcaggagaatggcgtgaacccgggaggcggagcttgcagtgagccgagatcccgccactgcactccagcctgggcgacagagcgagactccg s panTro2.unknown 0 0 + 0 --------------------------------------------------------------------------------------------------------------------------------------------------- s rheMac2.unknown 0 0 + 0 --------------------------------------------------------------------------------------------------------------------------------------------------- a score=1141.2 s hg18.7 26986184 496 + 158821424 tctcaaaaaaaaaaaaaaaaaaaaaaaagaaaagaaaaGACCATTGAAGGT-CACAATTTGCATATTGATCTAACTGTATGCTTATTCTCTTACAAACATGTAATTGACTTTGC-TTTCATCGGATTTTGGTTCTAAACCA--ATTTTA-TCAGTTGTAGTCTCACTG------GTAATTTCAGTG-----AAGTATGAGAAACA-GATGTTA-GTTAAGAAGATAGCATGTATAC--ACTAATCTGGATAACAGATTTAATACATACTGGATAT--ACTGCTTTGTAGGCATTGG-----------------ATTTGATCAATAGCT---GTGCTC---CATTCTTACTACATTTCTTGGGGTATGAAGTATTT------CACAGTTAAG--ATCTGATTT---AGTCTAAAG---TTTATC-ATACAGAGAA-AATACA--CAACTGAA--CAATGATTGGAAGCATCATCAAGTCCTTATCTGGTATAACAGTAGG----ATAATTAATTGCAATAATA-AATCTTCTCTC--------------ACTGAGT---ACTAGAG--TTTTA--AAAATTGTCTTTC s panTro2.7 27322788 467 + 160261443 -----------------------------AAAAGAAAAGACCATTGAAGGT-CACAATTTGCATATTGATCTAACTGTATGCTTATTCTCTTACAAACATGTAATTGACTTTGC-TTTCATCGGATTTTGGTTCTAAACCA--ATTTTA-TCAGTTGTAGTCTCACTG------GTAATTTCAGTG-----AAGTATGAGAAACA-GATGTTA-GTTAAGAAGATAGCATGTATAC--ACTAATCTGGATAACAGATTTAATACATACTGGATAT--ACTGCTTTGTAGGCATTGG-----------------ATTTGATCAATAGCT---GTGCTC---CATTCTTACTACATTTCTTGGGGTATGAAGTATTT------CACAGTTAAG--ATCTGATTT---AGTCTAAAG---TTTATC-ATACAGAGAA-AATACA--CAACTGAA--CAATGATTGGAAGCATCATCAAGTCCTTATCTGGTATAACAGTAGG----ATAATTAATTGCAATAATA-AATCTTCTCTC--------------ACTGAGT---ACTAGAG--TTTTA--AAAATTGTCTTTC s rheMac2.3 97176883 474 - 196418989 ----------------------AAAAGAAGACAGAAAAGACCACTGAAGGT-CACAATTTGCATATTGATCTAACTGTATGCTTATTCTCTCACAAACATGTAATTGACTTTGC-TTTTATTGGATTTGGGTTCTAAACCA--ATTTTA-TTAGTTGTAGTCTCACTG------GTAATTTCAGTG-----AAGTATGAGAAACA-GATGTTA-GTTAAGAAGATAGCATGTATAC--ACTAATCTGGATAACAGATTTAACACATACTGGACAT--ACTGCTTTGTAGGCATTGG-----------------ATTTGATCAATAGCT---GTGCTC---CATTCTTACTACATTTCTTGGGGTATGAAGTATTT------CACAGTTAAG--ACCTGATTT---AGTCTAAAG---TTTATC-ATACAGAGCA-AATACA--CAACTCAA--CTATAATTGGAAGCACCATCAAGTCCTTATCTGGTATAACAATAGG----AGAATTAATTGCAATAATA-AATCTTCTCTCACTAAGTACTAGAGTTTTAAA---AATTATC--TTTC---------------- a score=8570.2 s hg18.7 26986680 6467 + 158821424 CTATAATGACTGATA-----gtagtagaaaatgcactgatttgggaatcagaagacttaagt-tgaaacctggctgtgccatttatcagttgtagaagtctgagcaagatgttttaactcagta--tctctgttttaacatctgtgaaatgggaataatga----taTTCCA-TAATAATACTTGTTCTGCCTATCtt----------ttttctaaga----gacagtgt--ctcactctgcca---tccatgg----tggagggcagtgatgtgatcatagctcactgtaacctccaactcctaggctcaaaatgtcctcccacctcagcctcctgagtag-----------------ctaggactacaggcatgcatcaccacgcctagctaatttatttatttattt-tattttatttttttgtagagatgggatcttgtaatgttgcacaggctgg-tcgcaaactcctggactcaa-gtgatcctcccacctcggcctcgcaaagggctaggattacaggcatgagcaa-----ctgcacccagccTTGTTCTGTCT-ATCTTATAGGTCTGTTTTGAGTAGTAGATGGAACTTATTCATTGATTCATT-AGTACGTCTTTAGTGCCTATTAGATTCTATGACAGATAATGCATATTG--AAGAGGTGTAT-AAATTTCAAAGCCCTATAGAAAT---AAA-GAAATTATTTAATTT-AGAAAATATTTGATTTGGAAT-----------------ATTTA-ATATTGGAGTAA------------GTGGAACCTTTGGGATATCT-TACTAAACAG-----AAAA-GA----CTATCCTTTTAATTTTTT---AATGTAATACTGTTT--ATTTAACTTCAAAAACATTTCGGCTTTCTAAACATA-CAAAAAAAATAACAGAACATTGCAAATCGTGTTTAAGTACAGGAGGTTCTTGAACTTACAACAttttatttttatttttattttttttgaga------tggcgtttcgctctcgttgcccaggc---tggagtgcaatggctcaatctcagct-caccgcaacccccacctcccgggttcaagcgattctcctgcctcagcctcccaagtagctgggattacaggcatg-agccatcacacccagctaattttgtgtttttagtagagacggggtttctca-at--gttggtc-aggctggtctcaaactcctgacctcaggtga-tccacccaccttgacgtcc--caaagtgctggtattacaggcatgagccaccacatccagATGAAGTTCTTGAACTTTCACTGATGCAGTGGCTCTTCGCTTTGCTGACAATGAACTGTTTAAACTGTTGTTTAAAAACAAACAGTTTAggccaggcgtggtggttcacgcctgtaatcccagcactttgggaggccgaggtgggtgaatcacaagatcaggagttcgagaccagcctggccaacatggtgaaaccctctctctactaaaaataaaaaaattagctgggcatggtggtttgtgcctgtaatcccagctactcaggaggctgacacaggagaattgcttgaacccaggaggcggaggttgcagtgagttgagatcgcaccatggcactccagcctgggcaacagagaaagactctgtctcagaaaaaaaaagagagaaaaaaaaCATTTAAAAACTA-CCACACTT---------------AACAAAAATAA----AAAC-C---------TT-----------CTCATGCCAGCTGA-----CCCCCCTTTGTCCACAGCTAAG-ATGGCAGCAGAATGCTATGTCACTATATACAGAAACAAGACAACCTGAAGCTAAATGGATGCCCACTGCAGAGTCAACAGGTCCAGCCTCACAGTGCATATCCTGAGCT------ACAGC--------------------CCCTTC---AAAAGGCATCTT--------------------CCCCAT------AGCCTCAA---CGCCGAG---CAAGGAGCAT-TAAGAGTTTGTCTCGGTTGTTTTGTTC-TTTTTACAAACTATAGACATATACAGTTGATAACTCAGGA-----TTTCTAGCCAATAACCATATAGTT-AAAACCACCTTACAAAT----------------A-AA---AAAAAGCCAGAAACATCTTTTAAATGCCTTGTCACACCAACA-GCAAAGTGCACAGAG-TGAGGAGAACACGAGAATGCCTTA-------------------------------------------TCATTTTTAAAATGTTTGGAAATATGTACAACTTTGATAAAGTTTCAGGGTGCTCCAG---A----CACCCATGGCCACTTCATGTAAACC-ACTGACA--------A--------------------------------------------------------------TTTCTAG---AGCACTTT----------------------------------GAGAGACTACAATATGATTGTGA--TCAAATTTTGT-------AATTAAACCTAAT--GAAGGCAA--CAGACAC-----TTCTCAAATAAGAGATG----------TGTCAATTATGGCGCTCCTC---TACTCTAA-GTATTCA---CATGGAGACAGAT---AAACAGTTTCTTTAttca------tcctcctcctcctcctcctcttcttct---------tcttcgccttcttca-tcttcctcttcC---A-CC-TTTTTC--------CAG---------GCAACATT----A---GCAGGACCCTCTGCGCCATCAAACTTTCCTTTCGACTTATAGTCAGGAA---------------------------------CAT--------------------------------------------------------------------------------------------------------------------------------CCTTCTCCTACTTCTCCTTCAGCTTTGCCGCCTTAGTGATGTAGGGCTGCTTTTCACTGTCATTTAAGTTATTCCACATCTCACCCAGCTTTTTCGCCATGTCTCTAATAGAGATGGTGGGGTTTGTAGATTTGATCTTGGGGCCTAATTCTGAACAGAACAGGAAGAATCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGGCCTTTTGGAGGCATTAGGATCCTT------CTTC---TTCTTGGCTCCCTTAGCTGGTCCATAATCCTTCATTTCCTGATCATAGCGCATTTTATCCGCCTTTGTTATTTCATCAAATTTAGATTTATCTTTCCCAGACATTGTCTTCCACCTCTCAGAGCACTTCTTGGAAAATTCTGCAAAATTGACAGGGACCTCTGGGTTTTTCTTCCTATGTTCTTCTCTGCACGTCTGCACATAGAAGGCATAAGCAGACATCTTGCCCTTTGGTTTCTTGGGGTCACCGTTAGCCAATCTGACTGTATTGTTCGC-------TAGTCTGGGC---AGCGCAGG-------------------GCACAATGCATGGCTCAGTGCT-CCCCAGCCTTGTGCTAGCTGCCTCCATGAGAGCCCGACTATCCTTTTAATTGA-TACAAAGCCCTGCC---------TCCATGGCTTAGACAAAAGACAAACATTTCCGCA----TTTTCTCCCTAATCTAACAGCAATGGTGAACTC-----A----------------C--------ATATGTAG---GAAATTC-----------------------------------------TAA---gta----tgtgtgtatgta-----------------------------------------tggatatatata----------------------atat--gtatg-tatttatgtatgtgtatatacatatatatacctatgcgtgtaCTGATGTATAAACA-CACA----AA----CATATCCAATTGTCA----T----TCTCAAGG-CCCCAGGACTTGCACATAGTTGAATTCTAAGGCAGCTGCTGCCA-TGGGATTAGGTCCAGATCAGGACT-GTTCG--AGCAAGACAGCAAAGGTCAGAATCACACCCAGGATGCCCTAGGAAGTCCAGGACA-CTAGCTAGTCAAAAATATTTA-------------TGTGAT--------------------------CAC----------------------------------TTCTCAGGCTTT-------------------------------------TGGCTAAGATTGAATGCA------------------------------------------------------------------------------AACTTATTTATTTGCCTTATCCAT--TTGTGCAGTCAGTCCTAAATGCCACAGGGAGAGAGGGAAACAAACTG-AAGAAAACATAGTCCCTAACCTTGAACTGCTCACACACTCCA-CTGAAAAGCAGAAAAGGCACAAGAAAATGTCTTCAGAGAACACTTACAGAACAGCCCAAGTGCAAATGAATACCA-TGTCATATAGCTTTTCTCTTTCTTCATC-CTTCACTTAGATCCCAACAAAATAATC--AAGAAAG--CCACTTCTCCCCCAA-----------------------------------------------GAGAGAGAAAAAGTA-----------------------TTCACAATATGCCAGTCACTAAACTGAATTCTTTACTtgaagaaacagagactcagagagtttaaataagtttcccaaacgaagtcacagacatactaaatagcatgga-cagtttcaaactgaaatctttatgattccaatgctcttaaccactacaccaTATGGTAACTTGTAAATAGCACTGAAAACTGTAATAATG-TTATTGGGCATTTTTTTGAG-------------------AATTGTAT-----GAGAATT-------AAGAATTGTTTTAA-AAATGGTT----------------AAGAA-----------------------------------------------------AATTCTATTT----------------------------AGATCA-----------------CTTCTATGTCCCACTCATAACACATGAAAACCACTGCTGCAGATTGAGTACAAAGGTACTACACAG-------TGAAGATGGATCTGAATTGAATCCAACGG----TGAACTGAAAGGATGTG------AGAGACTAAGTTAGT-AAGAGTTGC-CAAGATCAC--TCTTCTTCTTCAGAGAACTGAGTTAG--TAGAGGAAAGAAAGCTGGGCAGGCA-----AATCTGATTAGG---ATGAGGCGTTTTCATGATAGCCACACCCTAC-------TCCACCTAGAGCAGACCCAAACTCCAGGAGTGACCCAAACACAAACTGAGGTTCTCGGGGTCAAAGGATTCCCTCTTTTATGAACAAAATATgtctccacgcctctctgcacatgctgttgccactccctggaac----------actctttcccacatatccctagtaagatatttctctcaaaa---agctcaaattggccaggcatggtggttcacacctgtaatcccagcactttgggaggccaaactggaaggattgttagaggccaggagttcaagaccagtctgggcaacaaagtgaaacctcatctctacaaaaaaaaattaaaattagtcaggtggggtggtcccagctattcaggaggctgaggtaggaggatcactggagtctaggaggttgaagctgaggtaagccatgatctcgccactgtaccactgtactccaccccatctaaaatttaaaaaaataaaa-----------agctcaaatatca-ggattatagcactgccttctctga-ctctcccaagcAAACAGAATTACTAGTAGTTAACACCACTATTATAGAATTTGG--------------------------------------AGTGTAAGTGTGTGTATCC-----CCTCACCATTCTGATTAGCTGAATTCACTTATAAATTGCTTAATCCACGCAA----CAGTGTTGCACAAGACTGCAGGTTGTTCAAACCAttct------------------ttttttt---------gagatggagtctggctctgtcacccaggctg---gagtgcagtggcacaatctcggctcactgcaagctctgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgtccgccactacgcccagctaattttttgtatttttagtagagacagggtttcatcgtcactgagttcacgaggtctcgatcgcctgacctcgtgatcctcctacctcggcctcccaaagtgctgggattacagg----cgtgagccaccacgcc-tggccTCAAACCATTCT-----TA---------AAG--TCAAACTGTCTCTCTAAAATATTTAGAAACGTATTCACATTAAT-------------AAAGA---TATCATTACTGCAAGTGAACTACATCTTTATTTGAAATGAAGGCATGTTCTGTCCCTAAAGTTGGGCCAGGAAGAATGTTTA-TTCTACTCATTTTGCAGTAG--------------GAAACCTTT---ACATATCTGAGGGCCCAGAGAGTTACTTCATATGCCTGAAGCTTGAACT-----------------------------ATGGAGAGGCTAcatagtg-------aagtaggaagaccaccaggttaacaatcagg---aaacatggattacagtcctaa-----caggcttgcaagtcactg-aaacttgggcctcaggtttctttctctaaaataagagagttggttggatcagatgttttctcatgcccttttctgcttgatactatagtattaatatatgattTTACTATAAAATAAGAAT-----ACTAGAAT-TCAAGAAGC-AATGCAAAATCAGAAATAGGCTTTGAATGAAAGTATG--ACAGCACAG-GAACCCAAGAAAA-CA-------------GTTCATGAGCCTGTCCCAGA--------------------ACAC------------AACAGAAGCAC--------------AAACAAAGCCCTCCTCATAC----AATCCTCTTCT-ACCTTCACCCTTAAAG-------------GTTGAACCTTGCTTGAACCTCTGCTTCTCC---ATCT------TTTCCTCATTGC--CTCCAATTAAACCATTCTTTATTT--TTCTTCTGGATTACAAATCCATCATAA----AGTGATG-AAGTTTCATAAGAATTCTGCATAATTATTGCTCCTAGACTTT-GCAGAAAGCAGTGTGTGATTGAAAG-GCATACAGACCATG-----TTTCCCATTGCATATA--TATATGTAGGTATACA----TATA------------ATTTAATGATGTTATCTTcacacacacacatgcatacacacacaaataccctcac-aAAAACCATATCCT-A-----C----ATTATTCAAATCAATAT-------------TGATTAGAATTTTGTAATTC--AAGTTCTATGAAAATACTTATTA----ACATTTCATCATTTTATACCTCAGAT--AAGCACACAATGCTTTT------CCAAACTATTCAGTTTTGCTGTGGAACAAATATCTTTATTAAATGAATATTCATCAA-------TAATGAAACACTAAC-TATAGTGTTTG---------------AATATTTT-AAGGTTACTAATGTACTGCTAGTCAAAAATGTTTTAGAAATCCAAACT------TT--------TGCAAATATGCCTCTA-TTCACAA-----CAaagtatttatatgtgaatgtcatgatatctgggattttctttaaaatactcctccagcacctctcc---------caaatagtggggaggatagatgaaacaaga-------tccccaaaatgttataatttatcaaagccaaatgatggatacataggaatccattatactat----tctctctacttttgtgtatgttttcatttttccataataaaa------ac--agaTTTT s panTro2.7 27323255 6468 + 160261443 CTATAATGACTGATA-----gtagtagaaaatgcactgatttgggaatcagaagacttaagt-tgaaacctggctgtgccatttatcagttgtagaattctgagcaagatgttttaactcagta--tctctgttttaacatctgtgaaatgggaataatga----taTTCCA-TAATAATACTTGTTCTGCCTATCtt----------ttttctaaga----gacagtgt--ctcactctgcca---tccatgg----tggagggcagtgatgtgatcatagctcactgtaacctccatctcctaggctcaaaatgtcctcccacctcagcctcctgagtag-----------------ctaggactacaggcatgcatcaccacgcctagctaatttatttatttattt-tattttatttttttgtagagatgggatcttgtaatattgcacaggctgg-tcgcaaactcctggactcaa-gtgatcctcccacctcggcctcccaaagggctaggattacaggcatgagcaa-----ctgcacccagccTTGTTCTGTCT-ATCTTATAGGTCTGTTTTGAGTAGTAGATGGAACTTATTCATTGATTCATT-AGTACGTCTTTAGTGCCTATTAGATTCTATGACAGATAATGCATATTG--AAGAGGTGTAT-AAATTTCAAAGCCCTATAGAAAT---AAA-GAAATTATTTAATTT-AGAAAATATTTGATTTGGAAT-----------------ATTTA-ATATTGGAGTAA------------GTGGAACCTTTGGGATATCT-TACTAAACAG-----AAAA-GA----CTATCCTTTTAATTTTTT---AATGTAATACTGTTT--ATTTAACTTCAAAAACATTTCGGCTTTCTAAACATA-CAAAAAAAATAACAGAACATTGCAAATCGTGTTTAAGTACAGGAGGTTCTTGAACTTACAACAttttatttttatttttattttttttgaga------tggcgtttcgctctcgttgcccaggc---tggagtgcaatggctcaatctcagct-caccgcaacccccacctcccgggttcaagcgattctcctgcctcagcgtcccaagtagctgggattacaggcatg-agccatcacacccagctaattttgtgtttttagtagagatggggtttctca-at--gttggtc-aggctggtctcaaactcctgacctcaggtga-tccacccaccttggccttc--caaagtgctggtattataggcatgagccaccacatccagATGAAGTTCTTGAACTTTCACTGATGCAGTGGCTCTTCGCTTTGCTGACAATGAACTGTTTAAACTGTTGTTTAAAAACAAACAGTTTAggccaggcgtggtggttcacgcctgtaatcccagcactttgggaggccgaggtgggtgaatcacaagatcaggagttcgagaccagcctggccaacatggtgaaaccctgtctctactaaaaataaaaaaattagctgggcatggtggtttgtgcctgtaatcccagctactcaggaggctgacacaggagaattgcttgaacccaggaggcggaggttgcagtgagttgagatcgcaccatggcactccagcctgggcaacagagcaatactctgtctcagaaaaaaaaagagagaaaaaaaaCATTTAAAAACTA-CCACACTT---------------AACAAAAATAA----AAAC-C---------TT-----------CTCATGCCAGCTGA-----CCCCCCTTTGTCCACAGCTAAG-ATGGCAGCAGAATGCTATGTCACTATATACAGAAACAAGACAACCTGAAGCTAAATGGATGCCCACTGCAGAGTCAACAGGTCCAGCCTCACAGTGCATATCCTGAGCT------ACAGC--------------------CCCTTC---AAAAGGCATCTT--------------------CCCCAT------AGCCTCAA---TGCCGAG---CAAGGAGCAT-TAAGAGTTTGTCTCGGTTGTTTTGTTC-TTTTTACAAACTATAGACATATACAGTTGATAACTCAGGA-----TTTCTAGCCAATAACCACATAGTT-AAAACCACCTTACAAAT----------------A-AA---AAAAAGCCAGAAACATCTTTTAAATGCCTGGTCACACCAACA-GCAAAGTGCACAGAG-TGAGGAGAACACGAGAATGCCTTA-------------------------------------------TCATTTTTAAAATGTTTGGAAATATGTACAACTTTGATAAAGTTTCAGGGTGCTCCAG---A----CACCCATGGCCACTTCATGTAAACC-ACTGACA--------A--------------------------------------------------------------TTTCTAG---AGCACTTT----------------------------------GAGAGACTACAATATGATTGTGA--TCAAATTTTGT-------AATTAAACCTAAT--GAAGGCAA--CAGACAC-----TTCTCAAATAAGAGATG----------TGTCAATTATGGCGCTCCCC---TACTCTAA-GTATTCA---CATGGAGACAGAT---AAACAGTTTCTTTATTCA------tcctcctcctcctcctcctcttcttcc---------tcttcaccttcttca-tcttcctcttcc---a-cc-ttctTC--------CAG---------GCAGCATT----A---GCAGGACCCTCTGCGCCATCAAACTTTCCTTTCGACTTATAGTCAGGAA---------------------------------CAT--------------------------------------------------------------------------------------------------------------------------------CCTTCTCCTACTTCTCCTTCAGCTTTGCCGCCTTAGTGATGTAGGGCTGCTTTTCACTGCCATTTAAGTTATTCCACATCTCACCCAGCTTTTTTGCCATGTCTCTAATAGAGATGGTGGGGTTTGTAGATTTGATCTTGGGGCCTAATTCTGAACAGAACAGGAAGAATCCAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTGGCCTTTTGGAGGCATTAGGATCCTT------CTTC---TTCTTGGCTCCCTTAGCTGGTCCATAATCCTTCATTTCCTGATCATAGCGCATTTTATCTGCCTTTGTTATTTCATCAAATTTAGATTTATCTTTCCCAGACATTGTCTTCCACCTCTCAGAGTACTTCTTGGAAAATTCTGCAAAATTGACAGGGACCTCTGGGTTTTTCTTCCTATGTTCTTCTCTGCACGTCTGCACATAGAAGGCATAAGCAGACATCTTGCCCTTTGGTTTCTTGGGGTCACCGTTAGCCAACCTGACTGTATTGTTCGC-------TAGTCTGGGC---AGCGCAGG-------------------GCACAATGCATGGCTCAGTGCT-CCCCAGCCTTGTGCTAGCTGCCTCCATGAGAGCCCGACTATCCTTTTAATTGA-TACAAAGCCCTGCC---------TCCATGGCTTAGACAAAAGACAAACATTTCCGCA----TTTTCTCCCTAATCTAACAGCAATGGTGAACTC-----A----------------C--------ATACGTAG---GAAATTC-----------------------------------------TAA---gta----tgtgtgtatgta-----------------------------------------tggatatatata----------------------atat--gtatg-tatttatgtatgtgtatatacatatatatacctatgcgtgtaCTGATGTATAAACA-CACA----AA----CATATCCAATTGTCA----T----TCTCAAGG-CCCCAGGACTTGCACATAGTTGAATTCTAAGGCAGCTGCTGCCA-TGGGATTAGGTCTAGATCAGGACT-GTTCG--AGCGAGACAGCAAAGGTCAGAATCACACCCAGGATGCCCTAGGAAGTGCAGGACA-CTAGCTAGTCAAAAATATTTA-------------TGTGAT--------------------------CAC----------------------------------TTCTCAGGCTTT-------------------------------------TGGCTAAGATTGAATGCA------------------------------------------------------------------------------AACTTATTTATTTGCCTTATCCAT--TTGTGCAGTCAGTCCTAAATGCCACAGGGAGAGAGGGAAACAAACTG-AAGAAAACATAGTCCCTAACCTTGAACTGCTCACACGCTCCA-CTGAAAAGCAGAAAAGGCACAAGAAAATGTCTTCAGAGAACACTTACAGAACAGCCCAAGTGCAAATGAATACCA-TGTCATATAGCTTTTCTCTTTCTTCATC-CTTCACTTAGATCCCAACAAAATAATC--AAGAAAG--CCACTTCTCCCCCAA-----------------------------------------------GAGAGAGAAAAAGTA-----------------------TTCACAATATGCCAGTCACTAAACTGAATTCTTTACTtgaagaaacagagactcagagaatttaaataagtttcccaaacgaagtcacagacatactaaatagcatgga-cagtttcaaactgaaatctttatgattccaatgctcttaaccactacacGATATGGTAACTTGTAAATAGCACTGAAAACTGTAATAATG-TTATTGGGCATTTTTTTGAG-------------------AATTGTAT-----GAGAATT-------AAGAATTGTTTTAA-AAATGGTT----------------AAGAA-----------------------------------------------------AATTCTATTT----------------------------AGATCA-----------------CTTCTATGTCCCACTCATAACACATGAAAACCACTGCTGCAGATTGAGTACAAAGGTACTACACAG-------TGAAGATGGATCTGAATTGAATCCAACGG----TGAACTGAAAGGATGTG------AGAGACTAAGTTAGT-AAGAGTTGC-CAAGATCAC--TCTTCTCCTTCAGAAAACTGAGTTAG--TAGAGGAAAGAAAGCTGGGCAGGCA-----AATCTGATTAGG---ATGAGGCGTTTTCATGATAGCCACACCCTAC-------TCCACCTAGAGCAGACCCAAACTCCAGGAGTGACCCAAACACAAACTGAGGTTCTCGGGGTCAAAGGATTCCCTCTTTTATGAACAAAATATgtctccatgcctctctgcacatgctgttgccactccctggaac----------actctttcccacatatccCTAGTAAGATATTTCTCTCAAAA---AGCTCAAATTggccaggcatggtggttcacacctgtaatcccagcactttgggaggccaaactggaaggattgttagaggccaggagttcgagacccgtctgggcaacaaagtgaaacctcatctctacaaaaaaaaattaaaattagtcaggtggggtggtcccagctattcaggaggctgaggtaggaggatcactggagtctaggaggttgaagctgaggtaagccatgatctcgccactgtacCGCTGTACTCCACCCCATCtaaaatttaaaaaaataaaa-----------aGCTCAAATATCA-GGATTACAGCACTGCCTTCTCTGA-CTCTCCCAAGCAAACAGAATTACTAGTAGTTAACACCACTATTATAGAATTTGG--------------------------------------AGTGTAAGTGTGTGTATCC-----CCTCACCATTCTGATTAGCTGAATTCACTTATAAATTGCTTAATCTAGGCAA----CAGTGTTGCACAAGACTGCAGGTTGTTCAAACCAttct------------------ttttttt--------tgagatggagtctggctctgtcacccaggctg---gagtgcagtggcacaatctcggctcactgcaagctccgcctcctgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgtccgccactacgcccagctaattttttgtatttttagtagagacagggtttcatcgtcactgagttcacgaggtctcgatcgcctgacctcgtgatcctcccacctcggcctcccaaagtgctgggattacagg----cgtgagccaccacgcc-tggccTCAAACCATTCT-----TA---------AAG--TCAAACTGTCTCTCTAAAATATTTAGAAATGTATTCACATTAAT-------------AAAGA---TATCATTACTGCAAGTGAACTACATCTTTATTTGAAATGAAGGCATGTTCTGTCCCTAAAGTTGGGCCAGGAAGAATGTTTA-TTCTACTCATTTTGCAGTAG--------------GAAACCTTT---ACACATCTGAAGGCCCAGAGAGTTACTTCATGTGCCTGAAGCTTGAACT-----------------------------ATGGAGAGGCTAcatagtg-------aagtaggaagaccaccaggttaacaatcagg---aaacatggattacagtcctaa-----caggcttgcaagtcactg-aaacttgggcctgaggtttctttctctaaaataagagagttggttggatcagatgttttctcatgcccttttctgcttgatactatagtattaatatatgattTTACTATAAAATAAGAAT-----ACTAGAAT-TCAAGAAGC-AATGCAAAATCAGAAATAGGCTTTGAATGAAAGTATG--ACAGCACAG-GAACCCAAGAAAA-CA-------------GTTCATGAGCCTGTCCCAGA--------------------ACAC------------AACAGAAGCAC--------------AAACAAAGCCCTCCTCATAC----AATCCTCTTCT-ACCTTCACCCTTAAAG-------------GTTGAACCTTGCTTGAACCTCTGCTTCTCC---ATCT------TTTCCTCATTGC--TTCCAATTAAACCATTCTTTATTT--TTCTTCTGGATTACAAATCCATCATAA----AGTGATG-AAGTTTCATAAGAATTCTGCATAATTATTGCTCCTAGACTTT-GCAGAAAGCAGTGTGTGATTGAAAG-GCATACAGACCATG-----TTTCCCATTGCATATA--TATATGTAGGTATACA----TATA------------ATTTAATGATGTTATCTTcacacacacacatgcatacacacacaaataccctcac-aAAAACCATATCCT-A-----C----ATTATTCAAATCAATAT-------------TGATTAGAATTTTGTAATTC--AAGTTCTATGAAAATACTTATTA----ACATTTCATCATTTTATACCTCAGAT--AAGCACACAATGCTTTT------CCAAACTATTCAGTTTTGCTGTGGAACAAATATCTTTATTAAATGAATATTCATCAA-------TAATGAAACACTAAC-TATAGTGTTCG---------------AATATTTT-AAGGTTACTAATCTATTGCTAGTCAAAAATGTTTTAGAAATCCAAACT------TT--------TGCAAATATGCCTCTA-TTCACAA-----CAaagtatttatatgtgaatgtcatgatatctgggattttctttaaaatactccttcagcacctctcc---------caaatagtggggaggatagatgaaacaaga-------tccccaaaatgttataatctatcaaagccaaatgatggatacataggaatccattatactat----tctctctacttttgtgtatGTTTTCAGTTTTCCATAATAAAA------AC--AGATTTA s rheMac2.3 97177665 6147 - 196418989 CTGTAATGACTGATA-----GTAGTAGAAAATTCACTGATTTGGGAATTGGAAGACTTA------AAACCTGGCTGTGCCATTTATCAGTTGTGTAAGTCTGAGCAAGATGTTTTAACTCAGTA--TCTCTGTTTTAACGTCTATGAAATGGGAATAATGA----TATTCAA-TCTTAATACTTGTTCTGCCTGTCTT----------TTTTCTAAGA----GACAATGT--CTTACTCTGTCA---TCCATGG----TGGAGTGCAGTGATGTAATCATAGCTCACTGTAACCTCCAACTCCTAGGCTCAAAAGATCCTCCCACCTCAGCCTCCTGAGTAG-----------------CTAGGACTACAGGCATGCATCATCACATCTAGCTA--------ATTTTTTT-TTTTTTTTTTTTTTGAAGAGATGGGATCTTGTAATGTTGCACAGGCTGG-TCACAAACTCCTGGACTCAA-GTGGTCCTCCCACCTTGACCTCCCAAAGGGCTAGGATTACAGGCATAAGCAA-----CTGCACCCAGCCTTGTTCTGTCT-ATCTTATAGGTCTGCTTTGAGTAGTAGATGGAACTTATTCATTGATTCATT-AGTATGTCTTTAGTGCCTATTAGATTCTATGACAGATAATGCATATTA--AAGAGTTGTAT-AAATTTCAAAGCCCCATAGAAAT---AAA-GAAATTATTTAATTT-AGAAAATATTTGATTTGGAAT-----------------ATTTA-ATATTGGACTAA-GAAACATAAATGTGGAACCTTTGAGATATCT-TACTAAACAG-----AAAA-GA----CTATCCTTTTAATTTTTTAAAAATGTAATACTGTTT--ATTTAACTTCAAAAATATTTCAGCTTTCTAAACAAACCAAAAAAAATAACAGAACGTTGCAAATTGTGTTTAAGTACAGGAGGTTCTTGAACTTACAACA----------ATTTTT-TTTTTTTTGAGACAAAGTTCGTGTTTCTCCCCCCTCTTTTTATCACATGGGGAAAA-------AATCCCCGTTACCCAAAAACCCCAACCTCGTGGTGTATAGCGATCTCGCCGCCTCACCCT-CCAAGTAGCTGAGATTACAGGCATGAAGCCACCACCCCCAGCTTATTTTGTGTTTTTAATAGAGACAGGGTTTCTCATGT--GTGGTTCAAGGCTGGTCTGAAACTCCTGACCTCAAGTGA-TCAACCCACCTTGGCCTCC--CAACGTGCTGATATTACAGGCATGAGCCACCGTGCCCGGACGAGGTTCTTGAACTTTCACTGATGCAATGGCTCTTCGCTTTGCTGACAATGAAGAGTCCTACAGTTTGTTTAAAAACAAACAGTTTAGGCCAGGT-TGGTGGTTCACACCTGTAATTCCAGCACCTTGGGAGGCCGAGGTGGGTGAATCATGAGTTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTAAAACCCTGTCTCTACTAAAAATTTAAAAATTAGCTGGGCGTGGTGGTTTGCACCTGTAATCCCAGCTACTCAAGAGGCTGACACAGCAGAATTGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATTGCACTACGGCACTCCAGCCCGGGCAACAGAGCAAGACTCTGTCTCAG-AAAAAAAAGAGGAAAAAAAAAAATTTAAAAAGTA-CCGCACTTAAC---AAAAACAAAAACAAAAACAA----AAAC-C---------TT-----------CTCATGCCCGCTGA------CTCCCTTTGTCCACAGCTAAG-ATGGCAGCAAAATGCTATGTCACTATATACAGAAACAAGACAACCTGAAGTTAAATGGATGCCCACTGCAGAGTCAACAGGTCCAGCCTCACAGTGCACATCCTGAGCT------ACAGC--------------------CCCTCC---AAAAGGCATCTT--------------------CCCCAC------AGCCTCAA---CACCGAG---CAAGGAGCAT-CAAGAGTTTGTCTCGGTTTTTTTGTTC-TTTTTACAAACTATAGACATGTACAGTTGATAACTCAGGA-----TTTCTAGCCAATAACCATATAGTT-AACACCACCTTACAAAA----------------AGAA---AAAAAGCCAGAAACATCTTTTAAATGCCTTGTCACACCAACA-GCAAAGGGCAGAGAG-TGAAGAGAACATGAGAATGCCTTA-------------------------------------------TCATTTTTAAAATGTTTGGAAATAGGTACAACTCTGATACAGTTTCAGGGTGCTCCAG---A----CACCCATGGCCACTTCATGTAAACG-ACTGA---------------------------------------------------------------------------TCTAG---AGCACTTT----------------------------------GAGAGACTGCAATATGATCGTGA--TCAAATTTTGT-------AATTAAACCTAAT--GAGGGCAA--CAGACAC-----TTCTCAAGTAAGAGATG----------TGTCAATTATGGTACTCCCC----ACTCCAA-GTATTCA---CAAGGAGAC-------AAACAGTTTATTTATTCA---------GCCTCCTCCTGCTCCTCTTCTTCC---------TCTTTGCCTTCTTCA-TCTTCCTCTTCC---A-CCTTTTTTC--------CAG---------GCAACAAT----A---GCAGGATCCTTTGTGCCATCAAACTTTCCTTTCGACTTACAGTCAGCAA---------------------------------CAT--------------------------------------------------------------------------------------------------------------------------------CCTTCTCCTACTTCTCCTTCAGCTTTGCCGCCTTAGTGATGTAAGGCTGCTTTTCACTGTCATTTAAGTTATTCCACATCTCACCCAGCTTTTTTGCCACATCTCCAATAGAGATAGTGGGGTTTGTGGATTTGATCTTGGGGCCTAATTCTGAACAGAACAGGAAGAATCTAGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGTGGCCTTTTGGAGGCATTA-GATCCTT------CTTC---TTCTTAGCTCCCTTAGCTGGTCCATAATCCTTCATTTCCTGATAATAGCACACTTTATCCACCTTTGCTATTTCATCAAATTTAGATTTCTCTTTCCTGGACATTGTCTTCCACCTCTCAGAGCACTTCTTGGAAAATTCTGCAAAATTGACAGGGACCTCTGGGTTTTTCTTCTTATGTTCTTCTCTGCACATCTGCACATAAAAGGCATAAGCAGACATCTTGCTCTTTGGTTTCTTGGGGTCACCTTTAGCCATCCTGAGTGTATTGTTTGC-------TAGTCTGGGC---AGCGCAGG-------------------GCACCATGCATGGCTCAGTGCT-CCCCAGCCTTGGGCTAGCTGCCTCCATGAGAGCCCAACTATCCTTTTAATTGA-TACAAAGCCCTGCC---------TCCATGGCTTAGACAAAAGACAAACATTTCAGCA----TTTTCTCCCTAATTTAACAGCAATGCTGAACTC-----A----------------T--------ATACGTAG---GAAATTC-----------------------------------------TAA---GTG----TGTGCATGTGTA-----------------------------------------TGGATATACATA----------------------ATAT--GTATG-TATTTATGTATGTGTATATGCATACATATACATATGTGCATACAGATGTATAAACA-CACA----AA----CATATCCAATTGTCA----T----TCTCAAGG-CCCCAGGACTTGCACATAGTTGAATTCTAAGGGAGCTGCGGCCA-TGGGATTAGGTCTAGATCAGGACT-GTTCC--AGCGAGACAGCAAAGGTCAGAATCACACCCAGGATGCCCTAGGAAGTCCAGGACA-TTTTTTAGTCAAAAATATTTA-------------TGTGAT--------------------------CAC----------------------------------TTCTCAGGCTTT-------------------------------------TGGATAAGATTGAATGCA------------------------------------------------------------------------------AACTTATTTATTTGCCTTATCCAT--TTGTGCAGTCAGTCCTAATTGCCACAGGGAGAGAGGGAAACAAACAG-AAAAAAACATAGTCCCTAACCTTGAACTGCTCACACACTCCA-CCAAAAAGCAGAAAAGGCACAAGAAAATGTCTTCAGAGAACACTTACAGAACAGCCCCAGTGCAAATGAATACCA-TGTCATGTAGTTTTTCTCCTTCTTCATC-CTTCACTTAGATCCCAACAAAATAATC--AAGAAAG--CCACTTTTCCCCCGA-----------------------------------------------GAGAGAGAAAGAGTA-----------------------TTCACAATATGTCAGTCACTAAACTGAATTCTTTACTTGAAGAAACAGAGACTCAGAGAGTTTAAATAAGTTTCCCAAAAGAAGTCACAGACGTACTAAGCAGCACGGA-CAGTTTCAAACTGAAATCTATATGATTCCAATGCTCTTAACCACTACACCATATGGTAACTTGTAAATAGCATTGAAAACTGTAATAATC-TTACTGGGCATTTTTTTGAG-------------------AATTGTTT-----GAGAATT-------AAGAATCGTTTTTA-AAATGGTT----------------AAGAA-----------------------------------------------------AATTCTATTT----------------------------AGACAA-----------------CTTATTTGTCCCACTCATAACACATGAAAACCACCACTGCAGATTGAGAACAAAGGTACTACAGAG-------TGAAGATGGATCTGAATTGAATCCAACGG----TGAACTGAAAGGATGCG------AGAGACTAAGTTAGT-AAGAGTTGC-CAAGATCAC--TCTGCTCCTTCACAGAACTGAGTTAG--TAGAGGAAAGAAAGCTGGGCAGGCA-----AATGTGATTAGG---ATGAGGAGTTTTCATGATAGACACACCCCAC-------TCCATCTATAACATACCCAAACTCCAGCAGTGACCCAAACACAAACTGAGGTTCTTGGGGTCAAAGGATTCCCTCTTCTATGAACAAAATATGTCTCCATG--TCTCTGCACATGCTGTTGCCGCTCCCTGGAAT----------ACTCTTCTGCACATATCCCTAGTAAGATATTTCTCTCAAAA---AACTCAAATTGGCCAGGCATGGTGGTTCACACCTGTAATCCAAGCACTTTGGGAGGCCAAACTGGGAGGATTGCTAGAGGCCAGGAGTTTGAAACCAGTCTGGGCAACAAAGTGAAACCTTGTCTCTACAAAAAAATTTTTAAATTAGGCAGGTGGGGTGGTCCCCGCTACTCAGGAGGCTGAAGTAGGAGGATCACTGGAGTATAGGAGGTTGACGCTGAGGTAAGCCATGATCTTGCCACTGTACCACTATACTCCACCCTATCTAAAATTTTAAAAAATACAA-----------AGCTCAAATATCA-GAATTACAACACTGCCTTCTCTGA-CTCTCCCAAGCAAACAGAATTACTAGTAGTTAACACCACTATTATAGAATTTGG--------------------------------------AGTGTGAGTGTGTGTATCC-----CCTCACCATTCTGATTAGCTGAATTCACTTATAAATTGCTTAATCCACACAACAGTCAGTGTTGCACAAGACTGCAGGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAAACCATTCT-----TA---------AAG--TCAAACTGTCTCTCTAAAAAATTTGGAAATGTATTCACATTAAT-------------AAAGA---TATCATTACTACAAGTAAACTACATCTTTATTTGAAATGAAGGCATGTTCTGTCCCTAAAGTTGGGCCAGGAAGAATGTTTA-TTCTACTCACTTTGCAGTAG--------------GAAACCTTT---ACACATT--------------ATTACTTCATGTGCCTGAAGCTTGAACT-----------------------------ACGGAGAGGCTACATAGTG-------AAGTAGGAAGACCACCTGGTTAACAATCAGG---AAACATGGATTACAGTCCTAA-----CAGGCTTGCAAGTCACTG-AAACTTAGGCCTCATCTTTCTTTATCTAAAATAAGAGAGTTGGTTGGATCAGGTGTTTTCTCATGTCCTTTTCTGCTTGACACTATAGTATTAATATATGATTCTACTATAAAATAAAAAT-----ACTAGAAT-TCAAGAAGC-AATGCAAAATCAGAAATAGGCTTTGCATGAAAGTATG--ACAGCACAG-GAACCCAAGAAAA-CA-------------GTTCATGGGCCTGTCCCAGA--------------------ACAC------------AACAGAAGCAC--------------AAACAGAGCCCTCCTCATAC----AATCCTCTTCT-ACCTTCACCCTTAAAG-------------GCTGAACCTTGCTTGAACCTCTTCTTCTCC---ATCT------TTTCCTCATTGC--CTCCAATTAAACCATTCTTTATTT--TTCTTCTGGATTACAAATCCATCATAA----AGTGAT--AAGTTTCATAAGAATTCTGCATTATTATTGCTCCTAGACTTT-ACAGAAAGCAGTGCGTGACTGAAAG-ACATACAGACCATG-----TTTCCCATTGCATATA--TATGTGTAGGTATACA----TATA------------ATTTAATGATTTTCTCTTCACACACACACGTGTATACACACACATATACCCTCAC-AAAAACCATATCTT-A-----T----GTTATTCAAATCAATAT-------------TGATTAGGATTTCATAATTC--AAGTTTTATGAAAATACTTATTA----ACATTTCATCATTTTATACCTCAGAT--AAGCACATAATGCTTTT------CCAAACTATTCAGTTTTGCTGTGGAACAAATATCTTTATTAAATGAATATTCATCAA-------TAATAAAACACTAAC-TATAGGGTTTG---------------AATATTTT-AAGGTTACTAATCTATTGCTAGTCAAAAACGTTTTAGAAATCGAAACT------TT--------TGCAAATATGCCTCTA-TTCAAAA-----CAAAGTATTTATATGTAAATGTCATGATATCTGGGATTTGCTTTAAAATACTCCTCCAGCACCTCTTC---------CAAATAGTGGGGAGGATAGATGAAACAAGA-------TCAACAAAATGTTATAATTTATCAAAGCCGAATGATGGATACGTAGGAATCCATTATACTAT----TCTGTCTGCTTTTGTGTATGTTTTCATTTTTCCATAATAAAA------ACGAAGATTTT a score=7558.6 s hg18.7 26993162 6966 + 158821424 TTGAgctgggtgcagtagctcacacctgtaaccctagctacttgggaggctgagggtaaaggactgcttgagcctgagaatttgaggctgcagtgagctgattgtgctgccactgcactccagcctgggtaacagaataagatgctgtcttcaataaataaataaataaaaTGACTCTACGCTAGTGGCCTGAAACATAT-AAACGCATAACAAATGT-GTGTTGAATTAAAGTGCATAAGAAGAAACA------------------------------------------------------------------------ATAAACAAATAATAAAGAAATAAAGCTAATA-AGTAGAAACATTTTTAAATTTCAATGAAGACTACTGTAAC-------CATTGAGAAATTAAATTATATTCCTGGGTCCCTTTAGTG-TTTGTTTC--CCTTATACATTATATAATTTTTCAATCCTATT--GCCTTATTTTGTGATCTTAAGATCACATC--AAAGGGTGAAAGGTGGCTTGT-----ATATC---ATCAAT--------GATTAACAT----------------TTACAAAGTCCCCACTATGTAAAC--ACACAGCACTCTGCTGGAC-TCCTTTTAATATATAAGACA--ATAGCATGGAGT-----------------GCT-----AGCCAATGAGAACCGTCTTTATGAGACCGC-AGGAAGAT-----AT-A-----AAAAACAAAAGTCATTCT--CATATAGAAAATGCATTTC----ATTACG-TTTGTGTTTATCACCATGTGCTCTAATTCTCCTA----TACTTGTTATCACTTGCT-AACTGTATTAATCCAAATGA-G-------CTGCTGCCACTA------TATGCAA------CATCA-----AACCACAGTGAC---T--TAACCCACTATGTATCA------------------------------------------------------------ACTTTTAGAACTAAATA--------CTACTTTTG-AGATGATCTGTCATTCACAACTATGAC-TTCTCATAATGTT-CATAATGTATTCATTGTT-CCAATGTAACCATTCAATTTTTCCTAA----------CTACTC------------------------------ACTAATATGTAAATATCT-ATCTAAGGCAGTCTTTTAAGAGTTTCA---------------CTTCTCATTACC------------------A-----TGCAAAGATTGAAAAAGAGGGATATC---CCAAAA-A-GAAAAAT---CATTCTCTCC-TGAAA---A-AGTAGCCACAAGGG---------------CCTTACTCCAACA---------TTTAAACTTGGCAAG-----------------------------------ATTTTCATCAGCTAGAATCTAAATTGCTTTAGAATTTCGGTGGGGTG---GAACATGTGTGTGAACAAAACACTT--------------------------------------------------------------------------------------------------TAATTAgg---------ctgggcatggtggctcatgcctataatcccaacactttgggaggccgaggcaggagaatcctttgaggccaggagtttgaga----------------------------ccagcctggtcaatatagtgagaccctaactctacaaaaaaaTGTTT---TAAAT--------ACTTTAA--------------------------------TTATCTATTTCTACCTATAATA---GAGCCTTAGGTCAG-TA---------TTTTTCTCTTCATTTTTGCCATGC-----TTTTTTAAGATTA-AAAAAGGAGGTCTTTTgacttaagagacataacaatcagatgtaaaacattaaccatgaatggatcccagtttgga-----aaaaaag---tataagcattt------ggggaacaaatggagaaatttgaatatagataggttattggatga-------------------tatttgggaatta-tgttaattttcttagttgtaataatggcattgtgggtagatagaaaaatggccttatttttagaaagtctttgctgaagtattta--agggtgaactgtcgg------tcata---tctgcaactttatctgaaatggttc--acagatacatagatag-ac----aaaggcaaaatagtaacaactggtgaatctaggtagtgtacataacttcctgtatgcttgaaatttttcaaaataaaTAC---------TTT----------------TT----AAAA---AGCTGT-TTTT--CTG--GGGGTGGGGAAGGAAACTTTACTTAGACATGCT------AAATGGTG-ACCTAGGAGAATAATGTATGAGGACTGATGTCCCCTTT-TGACCTAGAAGTGTACTTTTT--AAACCAGGTT--------ACTTACTGCCCAAGGGT----TCCATAGCTGGGGAAGATA-CAATGAGAAA--TTAAGTACATAACAAAGGTATCAGTGATGGTTATCATC-ACCTCAGCAAACCGCCGTACCCTCAGTACACAGTGCCCTCAGCCACCATCTCCAGATCAATATGGCTATCAATGACAGATGGCC---------AAAGCATCCCTATTCACTCAGGTCATTCTTAGTTCACACGGTCCGA--CAGGATTT-AGGAGTCTTGTGTCATTAGACTGTCTTT------------------------------------------AGAAAACAACCTAGCCATT---------AACG-------------------------------GCGGAAG----CAGAGTAAAGT-TGTATGTCA---GACAGCTCA--------CTGTTGAC--AGTTTAAATACACT-----C--AGAAAGCT---TAAAACA-TGTTGATTTTCTGTGTACTAC-----GATTACATTTTTACTGGCAGAGAA-CGTATCATT----AAAACGT-------------------------------------------------AAATGCATGTTGAAAGC----AAAGCTATAAAAAGACTTTTCTGTCACAAA-----------CCATTTCTAGACCCACC-ATAGCTAGGAAGAAAAA--GTAATATTGTTCAGCACT-GATTT-GATCAAAATTGTAATTGCTGTGGAAAGGAGAAG---GGACTTT-GGCTCAAAT--ATAA--TTTTTAATATAGTTTATACTTCACAG-AATCTGA----TTTGG-GATCCATTTAGTTAAGAGACAGTCACAGTA-AAACA-GGTA----CCTAC---CTTTA-----------CAG-TAATATTTCATGAGGATAT---TAACAATTTCCTAATTATTGCAATATTAA---CCCTT---------------TATTACATGGTCCAATATTTTCACTCTTA--ATCATTCAGT-TTGTCCCTTGAGTTATCTAAGGT-AAGGTA-TCACCA--CTTTTGCC--CAAAACGTAT-------------AAATGCTCAAGCAACACAA--AGCAATACTGAT---------G--------AGGCCCT-----ATATTTACTACGA-ATAAATA-TTCTTCTGTATTTC-------AGTTATT-AAATAAATCCTACTCACTAGGAATTAGGATCTAAGC--AAACATAGTTTTATGAATAGCC-----------------AATAAATTAGTT--ACGG---------------------------------AT--GCATAGGGA-AATC------CATT-------TAATTTCAAGCAAGACCTTGAAATACATTTAGCCATT-TATGTCTATGACATACAAATAACAGACTTATTACTATCACAGGGTAAATTCCTTCTTGCTCAAG---TACTACTGACTTCATTATCTGAGGATTGGACATGGCCCAAAGTTTATTAACTCACAATATTTTCCTTCACAGCAGTATTTCCATGAACAGTTG-CTTTAAAT-TG-AAAAAACAGATCCATAGTTGTTA-GGGGAG----GC----AGAAGAGGATGGT-------TT--AGCATTGGTGAG-CGATGTGGTCAC-T-GAGTACAA-GGCCCTGTTCTAG---TCAAAG-AAAA-------------GTCACAAATA-----------CTCCATTTAGAAAGAGGCCTTAAA-----TAT-TTTCTAGG--AAGAA---TGAAAAATAATTTCTTTA-----GGGAGGAACATCCC---TCAGTCAAAT-TTCAAAAATAAATGG-TAGCATTTAT----ATAATAGTTGCCATAATGCT--TC-----CTCACTAACAAGAGAGAGAACT-CAAAAATAAAAGAATCTTGGCCTCTAGAAA-AAGCAGTGGGAAACCTCTGGCCCTT-AGTTTAATTT--CTTCCAGCTACACCACGAAAAGTTTTCTAAAACTAAGTG--TGCTTT-GTGCCTCCCTTCTCTACCATTAAGAGCAACAAATACAGCTGTGCAAACAGCAGGAA-TGTGTGTTC---CTGTGGTAAGACGCATGTCCTGGCTCTTCCTAGAGGAATTCTTTTTCAGA---CATGTCCACAATCTTC--T-GAGTCAGTAGGCTCA---AAGAAGGATGAGGGGATTGTGGGCAAGGGTAAACTCCAGCCTGAATCCATAAGAGAAGATATAAGGCAAATTGTTTGGGATTCTTGGGCAACAGAAAGAAAACTTTCTGACAGCTGG-CAAGAA---------------------------------------------------AGAAG--------------------------------------------CTGAG-------------AAAGCAAGAAA--------TATTGC--TATTCCTCCTGTCCATTTTTATCT---TTTTCTCCTCT----------GCCACCTTC---------------------T-------------------TTTTTTG---ATTAtaagaacataggccttggagcca-ctgtcagggtttgaatctcagtccattatgtattcattgtttgatttggataatttatctaaTATAT----TATTTGGTCT----ctttttatattttgtgtatccattgtatgttttttggtttgaggttaaaatgaggtttacaaataccatcttataacccatttattatagcttgataaaaatttaacagtgtttgcataaacaagcagacaagcaaaaagaaaactaataggctgggtgtagtggctcaagcccataatcccagcactttgggaggccgaggcaggtggatcatttgaggtcaggagtttgagaccagcctggccaacatggcaaaacccccgctctactaaaaatacaaaaattagccaggcctggtggtgtgcagctgtaatcccagctactcaggaggctgaggcaggagaatctcttgaacccaggaggtagagtttgcagtgagccgagatcacaccactgcactccagcctgggtgacagagcgagactccatctcaaaaa--------aaaagaaaagaaaagaaaagaaaactaataaaaactatatagcttaacttcatctccccactttttaactt-tttttgtttctatttatttattttttgagacaggatcttgctctgttgcccaggctggagtgcagtggcaaaatgggtggaatgg----tatctcatggagtt-----taaggattgaataaaataatattaaatacatagcaggtgtctggttcatggtaggtgcctgaaa-aatatgttagcacttttcttCTTC------TTTTA---------------------------TTTTGAGTCTTGATTTCTTCTT-TGCAA-CTTTTTTCACATCTGATAGAACTTTGGATCCTGAagccaggcatggtggctcatgcctgtaatcccatccctttaggagtccaacactgcaggactgcttgaggccaggagttcaagaccagcctgggcaacacaacaagaccccatctctacaaaaagttttttaaaattagcagggtgtggtggcgtgtgcctgtagtcctaggtacttgggaggctgaggcaggaggattgcttgagctcaggaggtcgaggctgcagtgagctatgatcatgccactgcactccagcctgggtgacaCC----ACAAACCAACAAACAAAGAAGTTTGGATCATTTTCTTTGTTACTTATTTTCTATGGATCAGTGACATTGGAT--AGAAAAATTTCTCAATACTC---GGTGT--GTGGGATGTTCAACCACAAAGGCTGATGG-CTTCATGTTTG-TGTGAAACCCAAAAGACTGAGTTTCCTTTTGATCTG-ATGAAGAACTATTTTCGTAACAAGAAG--TTTCAGGGAACCTGGGAAT-------TAGAA---AAGAACGCCTGGCTCTT--CT---CCttttgttt-------tttgtttgtttg-tttttgaggcggagtttcgctcttgttgcccaggctggagtacagtggcacgatctcggctcactgcaacctctacctcctgggttcaagcgattctcctgcttcagcgtcctgagtagctgggattataggcatgcaccaccatgtccagctaattttcttttatttttagtagaaacggggtttcatcatgttggccaggctggtctcgaactcctgatcccaggtgatccacccgcctcggcctcccaaagtgcagggattacaggcgtgagccaccgagatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcctgccacaatgcccggctaattttatttatatatttgtatttttagtagagacgacggagtttcaccgtacaggccagaatggtctccatctcctgacctcgtgatccgcccgcctcggcctcccaaagtgctgggattataggcgtgagccaccgccccccggccCT----GTCCTTAATCAACGATTGT--TAC--ACTTGCGTT-GCCTCTGAAACAA---TGATACAGAATTTAGGTAGAGACTCCAAGTGGCTGAACAGACTTCAGTGCAGCCTGAGCCCTGGTATAGGTCGTGTATCCTC-TCC----TCACAG----------TGAGATTTGGGCTCTGGA-----G----------------------------------GACTGTCTTATTAAA------AGCAAGTTTCAACAGCAGAGAAGTGAGTCTGAACTAGA----TC-TGTAGAGAA-----AAA--TTCTGT---GTTGAAA----GCGAAATGAATCTTAGCTCAAGT-----TTCAGCA----------T---GTTACTTTTGAACTA-----GCA---ATGC--A-----AGTACTGT-------------------GTTTTT------------------TAAGGATATGG------------AAGGAACCCAAAAGTCACTGC------------------AGAAAGGAATCG-T---------GATT-aaaaa-----------aaaaaaaaaagaat--caaag-gg--taggagaaaga----gagtaagagaa----a-g---agagagaaggaaaCAT-----------TTACTCAAGTGGAAG------TGTTCTCTT----------------------CCTA-GCCTCCAAGAGA------------------------------------------------------------------GCACC-----------CCTTTTGGGT----GGGCAGCCTGGGGAAAAGCACTTCA------------------------------------------------------------------------------------------------------GGAG--CAGTTTG-CTACAGCAAGCAATG----CTGCTGACT---Gt---tc----cctccttggaactccttggccctttgggtttctggacacctc--tattctagtcctc--------------cttct---cctgtgccctccctgattatttcccagggctgactccttagagctttctcttctcattccagaagctctagatgaacaagtttgtttatttctatggcttctcctaccccttaaatgatagcaactcccaaatgtacctttttaaa-ccattctctcttctaaaacccacaagccaaattggccatcagtaactgattggtgatcacatctaaaatcaaagtta-tc---tccattcctcctaaacctcttccca---------ccatacttta----ccagttccc--agtcaaagcagttctgaagtcattcttcattatttcctctaatacaactaccaaatctgatctatcaccaactgctattgaatgtacttctagaatctctctctaatctgtacctatct--tccaatcctactgccactgttttttgggattttttggt-----------ttgtgt----------ttctttgttt-tg--ttttttttttttttgagactgggtctcactttgttaccaaggccggaatgcagtggcgatcatagctcactgtcacctcaaattcctgggctccagggatcctctcacctcagcctttaaagtagctgggactacaggcatgagccaccatgcccagctaatttttt--aaaaaattttttgtagagatggagtcccgctatgtctaggctggtctcaaactcctgggctcaaatgatcttcccatcttggactccaaa s panTro2.7 27329738 6978 + 160261443 TTGAgctgggtgcagtagctcacacctgtaaccctagctacttgggaggctgagggtagaggactgcttgagcctgagaatttgaggctgcagtgagctgattgtgctgccactgcactccagcctgggtaacagaataagacgctgtcttcaataaataaataaataaaaTGACTCTACGCTAGTGGCCTGAAACATAT-AAACTCATAACAAATGT-GTGTTGAATTAAAGTGCATAAGAAGAAACA------------------------------------------------------------------------ATAAACAAATAATAAAGAAATAAAGCTAATA-AGTAGAAACATTTTTAAATTTCAATGAAGACTACTGTAAC-------CATTGAGAAATTAAATTATATTCCTGGGTCCCTTTAGTG-TTTGTTTC--CCTTATACATTATATAATTTTTCAATCCTATT--ACCTTATTTTGTGATCTTAAGATCACATC--AAAGGGTGAAAGGTGGCTTGT-----ATATC---ATCAAT--------GATTAACAT----------------TTACAAAGTCCCCACTATGTAAAC--ACACAGCACTCTGCTGGAC-TCCTTTTAATATATAAGACA--ATAGCATGGAGT-----------------GCT-----AGCCAATGAGAACTGTCTTTATGAGACCGC-AGGAAGAT-----AT-A-----AAAAACAAAAGTCATTCT--CATATAGAAAATGCATTTC----ATTACG-TTTGTGTTTATCACCATGTGCTCTAATTCTCCTG----TACTTGTTATCACTTGCT-TACTGTATTAATCCAAATGA-G-------CTGCTGCCACTA------TATGCAA------CATCA-----AACCACAGTGAC---T--TAACCCACTATGTATCA------------------------------------------------------------ACTTTTAGAACTAAATA--------CTACTTTTG-AGATGATCTGTCATTCACAACTATGAC-TTCTCATAATGTT-CATAATGTATTCATTGTT-CCAATGTAACCATTCCATTTTTCCTAA----------CTACTC------------------------------ACTAATATGTAAATATCT-ATCTAAGGCAGTCTTTTAAGAGTTTCA---------------CTTCTCATTACC------------------A-----TGCAAAGATTGAAAAAGAGGGATATC---CCAAAA-A-GAAAAAT---CATTCTCTCC-TGAAA---A-AGTAGCCACAAGGG---------------CCTTACTCCAACA---------TTTAAACTTGGCAAG-----------------------------------ATTTTCATCAGCTAGAATCTAAATTGCTTTAGAATTTCGGTGGGGTG---GAACATGTGTGTGAACAAAACACTT--------------------------------------------------------------------------------------------------TAATTAgg---------ctgggcatggtggctcatgcctataatcccaacactttgggaggccgaggcaggagaatcccttgaggccaggagtttgaga----------------------------ccagcctggtcaatatagtgagaccctaactctacaaaaaaaTGTTT---TAAAT--------ACTTTAA--------------------------------TTATCTATTTCTACCTATAATA---GAGCCTTAGGTCAG-TA---------TTTTTCTCTTCATTTTTGCCATGC-----TTTTTTAAGATTA-AAAAAGGAGGTCTTTTgacttaagagacataacaatcagatgtaaaacattaaccatgaatggatcccagtttgga-----aaaaaag---tataagcattt------ggggaacaaatggagaaatttgaatatagataggttattggatga-------------------tatttgggaatta-tgttaattttctcagttgtaataatggcattgtgggtagatagaaaaatggccttatttttagaaagtctttgctgaagtattta--agggtgaactgtcgg------tcata---tctgcaactttatctgaaatggttc--acagatacatagatag-ac----aaaggcaaaatagtaacaactggtgaatctaggtagtgtatataacttcctgtatgcttgaaatttttcAAAATAAATAC---------TTT----------------TT----AAAA---AGCTGT-TTTT--CTG--GGGGTGGGGAAGGAAACTTTACTTAGACATGCT------AAATGGTG-ACCTAGGAGAATAATGTATGAGGACTGATGTCCCCTTT-TGACCTAGAAGTGTACTTTTT--AAACCAGGTT--------ACTTACTGCCCAAGGGT----TCCATAGCTGGGGAAGATA-CAATGAGAAA--TTAAGTACATAACAAAGGTATCAGTGATGGTTATCATC-ACCTCAGCAAACTGCCGTACCCTCAGTACACAGTGCCCTCAGCCACCATCTCCAGATCAATATGGCTATCAATGACAGATGGCC---------AAAGCATCCCTATTCACTCAGGTCATTCTTAGTTCACACGGTCTGA--CAGGATTT-AGGAGTCTTGTGTCATTAGACTGTCTTT------------------------------------------AGAAAACAACCTAGCCATT---------AACG-------------------------------GCGGAAG----CAGAGTAAAGT-TGTATGTCA---GACAGCTCA--------CTGTTGAC--AGTTTAAATACACT-----C--AGAAAGCT---TAAAACA-TGTTGATTTTCTGTGTACTAC-----GATTACATTTTTACTGGCAGAGAA-CATATCATT----AAAACGT-------------------------------------------------AAATGCATGTTGAAAGC----AAAGCTATAAAAAGACTTTTCTGTCACAAA-----------CCATTTCTAGACCCACC-ATAGCTAGGAAGAAAAA--GTAATATTGTTCAGCACT-GATTT-GATCAAAATTGTAATTGCTGTGGAAAGGAGAAG---GGACTTTTGGCTCAAAT--ATAA--TTTTTAATATAGTTTATACTTCACAG-AATCTGA----TTTGG-GATCCATTTAGTTAAGAGACAGTCACAGTA-AAACA-GGTA----CCTAC---CTTTA-----------CAG-TAATATTTCATGAGGATAT---TAACAATTTCCTAATTATTGCAATATTAA---CCCTT---------------TATTACGTGGTCCAATATTTTCACTCTTA--ATCATTCAGT-TTGTCCCTTGAGTTATCTAAGGT-AAGGTA-TCACCA--CTTTTGCC--CAAAACGTAT-------------AAATGCTCAAGCAACACAA--AGCAACACTGAT---------G--------AGGCCCT-----ATATTTACTACAA-ATAAATA-TTCTTCTGTATTTC-------AGTTATT-AAATAAATCCTACTCACTAGGAATTAGGATCTAAGC--AAACATAATTTTATGAATAGCC-----------------AATAAATTAGTT--ACGG---------------------------------AT--GCATAGGGA-AATC------CATT-------TAATTTCAAGCAAGACCTTGAAATACATTTAGCCATT-TATGTCTATGACATACAAATAACAGACTTATTACTATCACAGGGTAAATTCCTTCTTGCTCAAG---TACTACTGACTTCATTATCTGAGGATTGGACACGGCCCAAAGTTTATTAACTCACAATATTTTCCTTCATAGCAGTATTTCCATGAACAGTTG-CTTTAAAT-TG-AAAAAACAGATCCATAGTTGTTA-GGGGAG----GC----AGAAGAGGATGGT-------TT--AGCATTGGTGAG-CGATGTGGTCAC-T-GAGTACAA-GGCCCTGTTCTAG---TCAAAG-AAAA-------------GTCACAAATA-----------CTCCATTTAGAAAGAGGCCTTAAA-----TAT-TTTCTAGG--AAGAA---TGAAAAATAATTTCTTTA-----GGGAGGAACATCCC---TCAGTCAAAT-TTCAAAAATAAATGG-TAGCATTTAT----ATAATAGTTGCCATAATGCC--TC-----CTCACTAACAAGAGAGAGAACT-CAAAAATAAAAGAATCTTGGCCTCTAGAAA-AAGCAGTGGGAAACCTCTGGCCCTT-AGTTTAATTT--CTTCTAGCTACACCACGAAAAGTTTTCTAAAACTAAGTG--TCCTTT-GTGCCTCCCTTCTCTACCATTAAGAGCAACAAATACAGCTGTGCAAACAGCAGGAA-TGTGTGTTC---CTGTGGTAAGACGCATGTCCTGGCTCTTCCTGGCGGAATTCTTTTTCAGA---CATGTCCACAATCTTC--T-GAGTCAGTAGGCTCA---AAGAAGGATGAGGGGATTGTGGGCAAGGGTAAACTCCAGCCTGAATCCATAAGAGAAGATAGAAGGCAAATTGTTTGGGATTCTTGGGCAACAGAAAGAAAACTTTCTGACAGCTGG-CAAGAA---------------------------------------------------AGAAG--------------------------------------------CTGAG-------------AAAGCAAGAAA--------TATTGC--TATTCCTCCTGTCCATTTTTATCT---TTTTCTCCTCT----------GCCACCTTC---------------------T-------------------TTTTTTG---ATTAtaagaacataggccttggagcca-ctgtcagggtttgaatctcagtccattatgtattcattgtttgatttggataatttatctaaTATAT----TATTTGGTCT----ctttttatattttgtgtatccattgtatgttttttggtttgaggttacaatgaggtttacaaataccatcttataacccatttattatagcttgataaaaatttaacagtgtttgcataaacaagcagacaagcaaaaagaaaactaataggctgggtgtggtggctcacgcccgtaatcccagcactttgggaggccgaggcaggtggatcatttgaggtcaggagtttgagaccagcctggccaacatggcaaaacccccgctctactaaaaatacaaaaattagccaggcctggtggtgtgtagctgtaatcccagctactcgggaggctgaggcaggagaatctcttgaacccaggaggtagagtttgcagtgagccgagatcacaccactgcactccagcctgggtgacagagcgagactccatctcaaaaaaaaaaaagaaaagaaaagaaaagaaaagaaaactaataaaaactatatagcttaacttcatctccccactttttaactt-tttttgtttctatttatttattttttgagacagggtcttgctctgttgcccaggctggagtgcagtggcaaaatgggtggaatga----tatctcatggagtt-----taaggattgaataaaataatattaaatacatagcaggtgtctggttcatggtaggtgcctgaaa-aatatgttagcacttttcttCTTC------TTTTA---------------------------TTTTTAGTCTTGATTTCTTCTT-TGCAA-CTTTTTTCACATCTGATAGAACTTTGGATCCTGAagccaggcatggtggctcatgcctgtaatcccatccctttaggagtccaacactgcaggactgcttgaggccaggagtttaagaccagcctgggcaacacaacaagaccccatctctacaaaaagttttttaaaattagcagggtgtggtggcgtgtgcctgtagtcctaggtacttgggaggctgaggcaggaggattgcttgagctcaggaggtcgaggctgcagtgagctatgatcatgccactgcactccagcctgggtgacaCC----ACAAACCAACAAACAAAGAAGTTTGGATCCTTTTCTTTGTTACTTATTTTCTATGGATCAGTGACATTGGAT--AGAAAAATTTCTCAATACTC---GGTGT--GTGGGATGTTCAACCACAAAGGCTGATGG-CTTCATGTTTG-TGTGAAACCCAAAAGACTGAGTTTCCTTTTGATCTG-ATGAAGAATTATTTTCGTAACAAGAAG--TTTCAGGGAACCTGGGAAT-------TAGAA---AAGAACGCCTGGCTCTT--CT---CCttttgttt-------tttgtttgtttg-tttttgaggcggagtttcgcttttgttgcccaggctggagtacagtggcacgatctcggctcactgcaacctctacctcctgggttcaagcgattctcctgcttcagcgtcctgagtagctgggattataggcatgcaccaccacgtccagctaattttcttttatttttagtagaaacggggtttcatcatgttggccaggctggtctcgaactcctgatcccaggtgatccacccgcctcggcctcccaaagtgcaaggattacaggtgtgagccaccgagatctcggctcactgcaagccccgcctcccgggttcacgccattctcctgcctctgcctcccgagtagctgggactacaggcgcctgccacaatgcccggctaattttatttatatatttgtatttttagtagagacgacggagtttcaccgtataggccagaatggtctccatctcctgacctcgtgatctgcccgcctcggcctcccagagtgctgggattacaggcgtgagccaccgccccccggccCT----GTCCTTAATCAACGATTGT--TAC--ACTTGCGTT-GCCTCTGAAACAA---TGATACAGAATTTAGGTAGAGACTCCAAGTGGCTGAACAGACTTCAGTGCAGCCTGAGCCCTGGTATAGGTCGTGTATCCTC-TCC----TCACAA----------TGAGATTTGGGCTCTGGA-----G----------------------------------GACTGTCTTATTAAA------AGCAAGTTTCAACAGCAGAGAAGTGAGTCTGAACTAGA----TC-TGTAGAGAA-----AAA--TTCTGT---GTTGAAA----GCGAAATGAATCTTAGCTCAAGT-----TTCGGCA----------T---GTTACTTTTGAACTA-----GCA---ATGC--A-----AGTACTGT-------------------GTTTTT------------------TAAGGATATGG------------AAGGAACCCAAAAGTCACTGC------------------AGAAAGGAATCG-T---------GATTAaaaaa-----------aaaaaaaaaagaat--caaag-gg--taggagaaaga----gagtaagagaa----a-g---agagagaaggaaaCAT-----------TTACTCAAGTGGAAG------TGTTCTCTT----------------------CCTA-GCCTCCAAGAGA------------------------------------------------------------------GCACC-----------CCTTTTGGGT----GGGCAGCCTGGGGAAAAGCACTTCA------------------------------------------------------------------------------------------------------GGAG--CAGTTTG-CTACAGCAAGCAATG----CTGCTGACT---Gt---tc----cctccttggaactccttggccctttgggtttctggacacctc--tattctagtcctc--------------cttct---cctgtgccctccctcattatttcccagggctgactccttagagctttctcttctcattccagaagctctagatgaacaagtttgtttatttctatggcttctcctaccccttaaatgatagcaactcccaaatgtacctttttaaa-ccattctctcttctaaaacccacaagccaaattggccatcagtaactgattggtgatcacatctaaaatcaaagtta-tc---tccattcctcctaaacctcttccca---------ccatactcta----ccagttccc--agtcaaagcagttctgaagtcattcttcattatttcctctaatacaactaccaaatctgatctatcaccaactgctattgaatgtacttctagaatctctctctaatctgtacctaact--tccaatcctactgccactgttttttgggattttttggt-----------ttgtgt----------ttctttgttt-tgttttttttttttttttgagactgggtctcactttgttaccaaggccggaatgcagtggcgatcatagctcactgtcgcctcaaattcctgggctccagggatcctctcacctcagcctttaaagtagctgggactacaggcatgagccaccatgcccagctaatttttt--aaaaaattttttgtagagatggagtcccgctatgtctaggctggtctcaaactcctgggctcaaatgatcttcccatcttggactccaaa s rheMac2.3 97183829 6742 - 196418989 TTGAGCTGGGTGCAGTAGCTCACACCTGTAATCCTAGCTACTTGGGAGGCTGAGGCTAGAGGACTGCTTGAGCCTGAGAATTTGAGGCTGCGGTGAGCTGATTGTGCTGCCACTGCACTCCAGCCTGGGTAACAGAATAAGACGCTGTCTCCAATAAATAAATAAATAAAATGACTCTACACTAGTGGCCTGAAACATACAAAACTCATGACAAATGT-GTGTTGAATTAAAGTGCATATGTAGAAACA------------------------------------------------------------------------ATAAACAAATAATCAAGAAATAAAGCTAATA-AGTAGAAACAGTTTTAAATTTCGGTGAAGATGACTGTAAC-------CACTGAGAAATTAAATTATATTCTTGGGTCCCTTTAGTG-TTTGTTTT--CCTTATACATTATATAATTTTTCAATCTTACT--GCCTTATTTTGTGATCTTTAGATCACATT--AAAGGGTGAAAGGTGGCTTGG-----ATATC---ATCAAT--------GATTAACAT----------------TTACAAAGTCCCCACTATGTAAAC--ACATAGCACTCTGTGGGAC-TCCTTTTACTATATAAGACA--ATAGCATGGAGT-----------------GCT-----AGCCGATGAGAAACATCTTTATGAGACCAC-AGGAAGAT-----ATAA-----AAAAAAAAAAGTCATTCTCACATATAGAAAATGCATTTC----ATTACA-TTTGTGTTTATCACCATATGTTCTAATTCTCCTA----TACTTGTTATCACTTGCT-TACTGTATTAATCCAAATGA-G-------CTGCTGCCACTA------TATGCAA------CATCA-----AACCGCAGGGAC---T--TAACCCACTACGTATCA------------------------------------------------------------ACTTTTAGAACTAAATA--------CTACTTTTG-AGATGATCTGTCATTCACAACTATGAC-TTCTCATAATATT-CGTAATGTATTCATTGTT-CCAATGTGACCATTCAACTTTTCCTGA----------CTACTC------------------------------ATTAATATGTAAATATCT-ATCTAAGGCAGTATTGTAAGAGTTTCA---------------CTTCTCATTACC------------------A-----TGCAAAGATTGAAAAACAGAGATACC---TCAAAA-A-GAAAAAT---CATTCTCTCCTTAAAA---A-AGTAGCCA-AACGG---------------CCTTACTCCAACA---------TTTAAATGTGGCGAG-----------------------------------AATTTCATCAGCTAGAATCTAAATTGCTTTGGAATTTAGGTGGGGTG---GAACACATGTGTGAACAAAACACTT--------------------------------------------------------------------------------------------------TAATTAGG---------CTGGGCATAGTGGCTCATGCCTATAATCCCAACACTTTGGGAGGTCGAGGCAGGAGAATCCCTTGAGGCCAAGAGTTTGACA----------------------------CCAACCTGGTCAAAATAGTGAGACCCTGACTCTA-AAAAAAATGTTT---TAAAT--------ACTTTAA--------------------------------TTATCTATTTCTACATATAATA---GAGCCTGAGGTCCA-TA---------TTTTTCTCTTCATTTTTGCCATGG-----CTTTTTAAGATTA-AAAAAGGAGCTCTTTTGACTTAAGAGACATAACAGTCAGATGTAAAACTTTAACCATGAATGGATCCCAGTTTGAA-----AAAAAAAT--TATAAATACTT------GGGGAACAAATGGAGAAATCTGAATATGGATAGGTTATTGGATGA-------------------TATTTGGGAATTA-TGTTAATTTTCTCAGTTGTAATAATGTCATTGTGGGTAGATAGAAAAACGGCCTTATTTTTAGAACGTCTTTGCTGAAGTATTTA--AGGGTGAACTGTCGG------TCATA---TCTGCAACTTTATCTGAAATGGTTC--ACAGATACATAGATGG-AC----AAAGGCAAAATAGTAACAACTGGCGAATCCAGGTAGTGTATATAACTTCCTGTATGCTTGAAATTTTTCAAAATAAATAC----------TT----------------TT----AAAA---AGCTCT-GTTT--CTG--GGGGTGGGGAGGGAAACTTTACTTAGACATGCT------AAATGGTG-ACCTAGGAGAATAATGTATGAGAACTGATATAACCTTC-TGACCTAGAAGTGTACTTTTT--AAACCAGGTT--------ACTTACTGCCCAAGGGT----TCCATAGCTGGGGAAGATA-CAATGAGAAA--TCAAGTACATAACAAAGGTATCAGTGATGGTTATCATC-ACCTCAGCAAACTGCCATACCCTCAGTACACAGTGCCCTCAGCCACCATCTCCAGATCAATGTGGCTGTCAATGACAGATGGCC---------AAAGCATCCCTATTCACTCAGGTCATTCTTAGTTCACACGGTCCAA--CAGGATTT-AGGAGTCTTGTGTCATTAGACTGTCTTT------------------------------------------AGAAAACAACCTAGCCATT---------AACA-------------------------------GCGGAAA----CAGAGTAATGT-TGTATGTCA---GACAGCTCA--------CTGTTGAC--AGTTTAAATACACT-----C--AGAAAGCT---TAAAACA-TGTTGATTTTCTGTGTACTAC-----AATTACATTTTTACTGGCAGAGAA-CGTATCATT----AAAACGT-------------------------------------------------AAATGCATGTTGAAAGC----AAAGCTATAAAAAGACTTTTCTGTCACAAA-----------CTATTTCTAGACCCACC-ATAGCTAGGAAGAAAAA--GTAATATTGTTTAGCACT-GATTT-GATCAAAATTGTAATTGCTGTGGAAAGGAGAAG---GGACTTTTGGCTCAAAT--ATAA--TTTTTAATACAGTTTATACTTCACAG-AATCTGA----TTTGG-GATCCACTTAGTTTAGAGACAGTCACAGTA-AAACA-GGTA----CCTAC---CTTTA-----------CAG-TAATATTTCATGAGAATAT---TAACAATTTCCTAATCATTGCAATATTAA---CCCTT---------------TATTACATGGTCCAATATTTTCACTATTA--ATCATTCAGC-TTGTCCCTTGAGTTATCTAAGGT-AAGGTA-TTACCA--CTTTTGCC--CAAAAGGTAT-------------AAATGCTCAAGCAACACAA--AGCAATACTGAC---------G--------AGGCCCT-----ATATTTACTACAG-GTAAATA-TTCTTCTCTATTTC-------AGTTATT-AAATAAATCCTACTCACTAGGAATTAAGATCTAAGC--AAATATAGTTTTATGAATAGCC-----------------AATAAATTAGTT--ATGG---------------------------------AT--GCATAGGGA-AATC------CATT-------TAATTTCAAGCAAGACCTTGAAATACATTTAGCCATT-TGTGTCTATGACATACAAATAACAGACTTATTACTATCACAGGGCAAATTTCTTCTTGCTCAAG---TACTACTGACTTCATTATCTGAGGATTGGACTTGGCCCAAAGTTTATTGACTCACAATATTTTCCTTCATAGCAGTATTTCCATGAACAGTTGCCTTTAAAT-TGAAAAAAACAGATCCATAGTTGTTA-GGGGAG----GC----AGAAGAGGATGGT-------TT--AGCATTGGTGAG-CGATGTGGTCAC-T-GAATACAATGACCCTGTTCTGG---TCAAAG-AAAA-------------GTCACGAATA-----------CTTCATTTAGAAAGACACTTTAAA-----TAT-TTTCTAAG--AAGAA---TGAAAAATAATTTATTTA-----GAGAGACACATCTC-------TCAAAT-TTCAAAAATAAATTG-TAGCATTTAT----ATAATAGTTGCTATAATGCT--TC-----CTCACTAACAAGACAGAGAACT-CAAAAATAAAAGAATCTTGGGCTCTAGAAA-AAGCAGTGGGAAACCTCTGGCTCTT-AGTTTAATTT--CTTCTAGCTAGACCATGAAAAGTTTTCTAAAACTAAGTG--TCCTTT-GTGCCTCCCTTCTCTACCATTAAGAGCAACAAATACAGCTGTGCAAACAGCAGGAA-TG-----------TGTGGTAAGACACACGTCCTGACTCTTCCTGGAGGAATTCTTTTCCAGA---CATGTCCACAATCTTC--T-GAGTCAGTAGGCTCA---AAGAAGGATGAGGAGATTGTGGGCAAGGGTAAACTCCGGCCTGAATCCATAAGAGAAGATATAAAGCAAATTGGTTGGGATTCTTGGGCAACAGAAAGAAAACTTTCTGACAGCTGG-CAAGAA---------------------------------------------------AGAAG--------------------------------------------CTGAG-------------AAAGCAAGAAA--------TACTGC--TATTCCTCCTGTCTATTTT--TCT---TTTTCTCCTCT----------GTCACCTTC-----------------------------------------TTTTTTG---ATTATAAGAACATAGGCCTTGGAGTCA-TCGTCAGGGTTTGAATCTCAGTCCATTATGTATTCATTGTTTGATTTGGGTAATTTATCTAATATAT----GATTTGGTCTCCTACTTTTTATATTTTGTGTATCCATTGTATGTTTTTTGGTTTGAGGTTACAATGAGGTTTACAAATACTATCTTAAAACCCATTTATTTTAGTTTGATAAAAATTTAACAGTGTTTGCATAAACAAGCAGACAAGCAAAAAGAAAACTAATAGGCTAGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAAAATGGTGAAACCCCGGCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGTGTGCAGCTGTAATCCCAGTTACTCGGGAGGCTGAGGCAGGAGAATCTCTTGAACCCAGGCGGCAGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGACTGGGTGACAGAGCAAGACTCCATCTCAAAAG------------------AAAAGAAAAGAAAACTAATAAAAACTCTATAGCTTAACTTTATTTCCCCACTTTTTAACTTATTTTTGTTTCTATTTATTTATTTTTTGAGACAGGGTTTTGCTCTGTTGCCCGGGTTGGAGTGCAATGGCAAAATGGGTGGAATGA----TATCTCATGGAGTT-----TAAGGATTGAATAAAATAATATTAAATACATAGCAGGTGTCTGGTTCATGGTAGGTACTTGAAA-AATATGTTAGCA---TTTTTCTTC------TTTTA---------------------------TTTTTAGTCTTGATTTCTTCTT-TGCAA-CTTTTTTCACATCTGATAGAACTTTGGATCCTGAGACCAGGCATGGTGGCTCATGCCTGTAATCCCATCCCTTTAGGAGTCCAACACTGCAGGACTTCTTGGGGCTAGGAGTTCAAGACCAGCCTGGGCAACATAGCAAGACCCCATCTCTACAAAAAGTTTTTTTAAATTAGCAGGGCGTGGTGGCATGTGCCTATAGTCCTAGGTACTTGGGAGGCTGAGGCAGGAGGATTGCTTGAGCTCAGGAGGTCGAGGGTGCAGTGAGCTATGATCATGCCACTGCACTCCAGCGTGGGCAACACCACAAACAAACAAACAAACAAACAAGTTTGGATCCTTTTCTCTATTACTTATTTTCTATGGATCAGTGACATTGGAT--AGAAAAATTTCTCAATACTC---GGTGTAAGTGGGATATTCAACCATAAGGGCTGATGG-CTTCATGTTTG-TCTGAATCCCAAAAGACTGAGTTTCCTGTTGATCTG-ATGAAGAACTATTTTCATAACAAGAAG--TTTCAGAGAACCTGGGAAT-------TAGAAAAGAAGAATGACTGGCTCTT--GT---CTTTCTGTTTTTGTTTGTTTGTTTGTTTGTTTTTTGAGGCGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCACGATCTTGGCTCACTGCAATCTCTACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCGTTCTGAGTAGCTGGGATTATAGGCATGCGCCACCACGCCCAGCTGATTTTTTTTAATTTTTAGTAGAGACGGGGTTTCATCATGTTGGCCAGGCGGGTCTTGAACTCCTGACCCCAGGTGAACCACCTGCCTTGGCCTCCCAAAGTGCAGGGATTACAGGCACGAGCCACC----------------------------------------------------------------------------------------------ACACCCAGCCA--------------------------------------------------------------------------------------------------------------------------------------------CCTGGCTC------TTCTTAATTAACGATTGT--TAT--GCTTGCATT-GCCTCTGAAACAA---TGATACAGAATTTAAGTAGAGACTCCAAGTGGCTGAACAGACTTCAATGCAGCCTGAGCCCTGGTATAGGTCGTGTATCCTC-TCC----TCAAAA----------TGAGATTTGGGCTCTGGA-----G----------------------------------GACTGTCTTATGAAA------AGCAAGTTTTAAGAGCAGAGAAGCGTGTCTGAACCGGA----TC-TGTAGAGAA-----AAA--TTCTGT---GTTGAAA----GCAAAATGAATCTTAGCTCAAGT-----TTCAGCA----------T---GTTACTTTTGAACTA-----GCA---ATGC--A-----AGTACTGT-------------------GTTTTT------------------TAAGGATATGG------------AAGGAACCCAAAATTCATTGC------------------AGAAAGGAATCA-T---------GATT-TAAAA-----------AAAAAAAAAAGAAT--AAAAG-GG--TAGGAGAAAGA----GAATAAGAGGAAGACA-G---AGGGAGAAGGAAACA------------TTACTCAAGTGGAAG------TGTTCTCTT----------------------CCTA-GCCTCCAAGAGA------------------------------------------------------------------GCACC-----------CGTTCTGGGT----GGGCAGCCTGGGGAAGAGCACTTCA------------------------------------------------------------------------------------------------------AGAG--CAGTTTG-CTACAGCAAGCAATG----TTGCTGACT---GT---TC----CCTCCTTGGAACT-CTTGGCCCTTTGGGTTTCTGGACACCCC--TATTCTAGTCCTC--------------CTCCT---CCTGTGCCCTCCCTGATTATTACCCAGGGCTCACTCCTTAGAGCTTTCTCTTCTCATT-CAGAAGCTCTAGATTAACAAGTTTATTTATTTCTGTGGCTTCTCCTACCCCTTAAATGATTGCAACTCCCAAACGTACCTTTTTAAA-CCATTCTCTCTTTTAAAACCCACAGGCCAAACTGGCCATCAGTAACTGATTGGTGATCATTTCTAAAATCAAAGTTA-TC---TCCATTCCTCCTAAACCTCTTTCCA--CCA---TCCATACTCTATCTTCCAGTTCCCAAAGTCAAAGCAGTTCTGAAGTCATTCTTCATTATTTCTTCTAATTCAACTACCAAATCCAATCTATCACCAAGTGCTATTGAATGTACTTCTAGAATCTCTTTCTAATCTGTACCTATCT--TCCAATCCTACTGCCACTGTTTTTTGGGATTTTTTGGT-----------TTGTGT----------TTCTTTGTTT-TG----TTCTGTTTTTTTGAGATTGGATCTCATTTTGTCACCCAGGCTGGAATGCAGTGGCGATCATAGGTCACTATAACCTCGAACTCCTGGGCTCCAGGGATCCTCTCACCTCAGCCTTCAAAGTAGCTGGGACTACAGGTGTGAGCCACCATGCCCAACTAATTTTTTAAAAAAAAAATTTTGTAGAGATGGAGTCCTGCTATGTCTAGGCTGGTCTCAAACTCCTGGGCTCAAACAATCTTCCCACCTTGGACTCCCAA a score=9890.6 s hg18.7 27000165 10932 + 158821424 ctactgccactgtcttatacaaagctttcatcatctcctccctggattcc----taactt--tcatttctgatctttttttctggccaatctttg-taccaaagtgaactttctaaagcataaatctaatattttcttttttactaac-tttaata--acctttaatgggttccctctgattc--------tcaaaataaaaatccaaa---tccaaac--aaggttttttataacattgatgaagtgttccttgacatcctc-atctcttacaatttccccc---tctgca-ctcacaaaccttatttcaaaccctgcagtttggccacaaccggttatgtgcc--actccccaagcacagcatgtttcttcatgattcctt-------gc------acgttttgtttcctctata---tgaaatgttgttccctgcctggtgagctccttcata--ctctaagattaagctc-caatgtcactcctctgtaaagctttccctcactg-cccaATAGATTACTTATACC-T-ACCT-GTG-------GGATTATT--AGTCCTT----ACCTCTA-TT-GGGGAACCTTTAAAGAT----ACACTG-CAAGTACTGGTTTATGTATTTTTCTCCCTGAACAAATGAGACTGACATTGTGAGCTTGTAAAAGA----TAGGCATTGGCTCTTATTCCTTTTGATGTTCCCAGCTGTTTACCAAATACTCAAGAAATGTTAAT-GATGTCAAGAGAATTCAGCTTTCCACACAAAGAAAGAACCCCAGGA-CCCTCCAGAAAGTGCCACCCTTTCCCAGAGAGAACTCTTTAGG-CCCATG-TAG-----TCTTGCCCTGTGACTTAGCCCATAGCTAGAATAAGGGCAGAATATATTCCTT--------CAGCTTAAAAGAGAGACC---------G-ATGGGAACAGGG--CAG---------AGAGACAG--AA--AGAC--------AGAAGGA----AGGAGGAAG--AGATAGACGACCA-----CTCCTTTGATAATTCAGTGCACTTTTCCCC-CCT---AGAAAAAGGAA------CCTTGTTCCTTGATCAC-AAAATTGGAAAAGAAATAG--AACCTTCCCACAATGCTCTGTATTTAGAGG-ATACTT-AAAGAGCACTTGAatttatttatttatttatttatttattCAAGTGTTCTTTA------AGTATACAGGTGAATGCT---------CTCCAGTTGGTGG--GAAATTTGTACTAG-----A-----A-ATAAGGAA-CTCAGCATCTCACTCACCTTAGTTTG---TCCTTCACCA------------------------GCCCGTCTTTCTCT--TTCTGAG------------AGC--------------CTTT------GTCTC---CCTC--TC------------------------------------------------------TTCATGTCCAACAAGCAGAGAAAAATTAA-AGTGGC-AC----CAGGAAATT-TTT----------------CTAGCCTC--TATATCCA------AATAACCTCT------TA-A-AAAC-ACACTTGATTTACAACTACAACATATGCAACTGAGTATCTAAACTGTAAATCGAATGTAACCATTGTTCCTT--T--GG-ACA-TTTCCTTAATTTAA--TGAGTGATAAATAC--ACCCTTTAAGGACTATCAGTTCTAATCATTT-CCAAATGACTGA-TTTCCAGTGTGCT-GCTACCATACATT-TCCTTTATGTAAATAAATAAATATTTCTAAATTGCTTCCATTAATGTA-TAGAA-AAACATTT-GTTA-TTTATTTGTAAATGGTCATG--GGAG-GA-----TTATAAG--CA------------TAT----TGCC----A-----AATA-----AAATTCT------ATAACAATTCTCTTAGTATATTATGTTTGAAAATGCAATATTTATATAGTAGAAACCAT--AATATTAAAACCCA--ACA----AGCTTCTATAAGTTTGTCCTTTTTAA---A--TTTAAGCTA--TTAAA-----ATA-T-TTTT------GAATATGA---------GGAGAAATCTTTTAA--------TGCCAATTCCATATCAAAGGT--TAGGATTTTGCATTTATACAGAGCAGAGTTCATGAACTCCTGCTAATCATGTTAACAATCTACCAGGTTTCTAAAGGCTCAGCAGGG----GTTAGAATTAGAAGGCTCTGCCATCAACATCAATAACAGGAACAGTG---ACACTCA-GAAGAGTTTACCACCGTGCTCTCCTAAGAGGGTTCAG--------------CACATT----CAGGCACTGTAGCCCATA-ACTGAAGGAAATCTAT--AGTTAGTGATTCCAAAAGGGATCTAGAGGGACACATTATTTCAGATTTT-G-TT---TT-AAATAGT--GAG----TCT-------TAAAAA---------T-------------------------------TATATATG----------------------TGTGTAGGTATA--------CATAT------------TGTGTG--CGT----------GCT-AGTATATATACAATA----------------------------------------------------------------------------------------------TTATGA---------------TAGTC---ATA-----C----TTTTTATTT-----------------------------------------------GAAA----GAGC-CTT-ACCACTCAAAAGG-ATT-TTGA----------G-TTCAAATTTTTGTTTTGGT-----AACAAGAAAGACGTGAATGAAATCTCAAATGTTTCTCTGGGAGGCAAG------AAAATGGTTTGAATCCCTAATT-------------------CAGAAT-GCAGCCTGTTGGACAAATGATGACTCAAAC---AATCTCATGTATCC-TGGGCCCAAGGCAGGT----GGCAAATCAAT--TCAGAAACACATAAAAACAAAGTGAATACCTTTGAGTTTACAGATATACATTAAAAGCTAATTTC-AAAGTATTTTTAA---------------------------------------------------AAAT-AAACTTTCCA-CAATATGAATTTGTTATCTA---T-GGAT--TTC-CACAGG-CAGGAAA---ACAT----G----T------CCTCTTCC---ACCCC--TTTTTCA---AATTCTCACCCAATT----------CCCTTTCTTCA--------------CTCCCTTCT----------------------------CCAT-------------------------------------------------------AAAAAACACAATATTCAAATCTTAAGGCCAAGATGGCTAAGGTTTTTGTTGTTGTTGTTGTTTGAGACAGtgtgatgattaatactgagtgtcaacttgattggattgaaggatgcaaagtattgatcctgggtttgtctgtgagggtgttgccaaaggagattaacatctgagtcagtgggctgggaaatgcttaacccttaagcattaacatttgagtcagtgggctggaaaatgcttaaatccttaatctgggtgggcaccatctaatcagctgccagcacagccagaatataaagcaggcagaaaaatgtgaaaaggctagactggcctagcccccagcctacatcttcctcctgtgcaggatgcttcctgcccttgaacatcagactccaagttcttcagctttgggactcaggctggcttccttgctcctcagcttgcagcctattgtgggaccttgtgaccatgtgggttaatactacttgataaactctcctttttatacatatatatcctattagttctgtccctctagagaaccctaatacagattttggtatcaggagtggtcctagagaaacagaatattaaggatggagttcttttgttggttttggggtttctgcagttgactgcttaatatggttagacccaaaaatgctaaggactgtacttctaatagtatggaaaacactgatagtctttggtgtgaactgtttagagagttatacaaaataaatgcatttgacactcctgatttgccactcatgagagacaaggagtttagtgactctgtacataatacctttgactatatatggagaaccagtgaacataatgaagttggttggttgctcctaagatcactggacagtgatgaaagaaaatgatgaactcaaagattctaactcgtggcttcagaagcagatactgagcctcaaatccgctaagattgccctgagtgggagttttatctcctgtagagaaagagcagaaattgtggaaaaacagatagctcttatcaagcaagtggctgacttgcaaagaaaggtgcaggcataacctcaccaggtgtctactgttaaagtgagggcattaactggaaaagagtgggaccctgcaacttggaatggggacgtgtggccctgatgaaggtggggacactgcgcttgtaaattctgatgaaccttttttgctagaagaaacagcttccccatccccagtagtgacaatatcccctccctgacccacactgccatcatcctttccacctttgtctgaggagataaaccctgcagtgcctgaggcaactgcgatggcctcccctgaggcagttgccaggcaagataatgttgattctcttcaggagccacccccaacacccctgtttatttctggacccataattaaagtcctagaggtgaggttcagagtgtgacccatgaggaggtgcactacactcgaaaagaactgcttgagttttctaatttatatacgcagaaatctggagaacagacatgggaatggatattaagggtgtgggataatggtcaaaggaacatagagttagatcaggctgaatttattgatttgggcccactaagtagggattctgcatttaatgttgcagctcatggagttaaaaaaggctaaaatagtttatttgcttggttacctaaaatatggattaaaagatggcccactgtgagtgaggtggaaaagcctgatctcccttggtttaatatagaggaagggatccaaaggtttagggagattgagtttaggtagagtggattagtcactttagacctactcatcccggctgggagggtctagaagatatacccttgaacaatgctttgtgaaacagatttttcagggcagcagttgcaactttgaagagccctgtaattgctcttctctgtatgtcagatctaacagtaggaaccacagtcactcaactacaaaatttaaatactatgggaataattaaatcccgaggtggcaagggccaagtggcagcactcaaccatcaaaggcaagctactgtaatggacagcagaggcaaagcagcaatcagaatagcctgacttctgtagaggtctggcatcggctaattaatcacagtgttcctagaagtaaaattgataggaagcctactgcattcctacttaatttatataagcagaaaacttctacattgaatggacaaaagactaatttgaattataaaaacagagaatcacagcccctcaatcaatttccagacttggcccagtttacagatccagaaccccttgaatgaaggggaggctgggtcctcttgaggaaggatcccactacactaccgacaatttatgctgttaatctttctcccatccttccccatggaggcctccagacttttaccagagtacctgtgcattctggaaaggaaaataattaggctttttggggactactggacactggctctgagctgacgttgattccaagggacccaaaatgtcattgtagtcctctggttaaagtaggggcttatggaggtcaggtaattaatggagttttagctcaggtctgacttacagtgggtccagtgggtccccggactcatcctgtggtcatttcaccagtgccagaatgcataattggcatagacatacttagcagctggcagaacccccacattggctccttgactggtagagtgagggctattatggtgggaaaggccaaatggaagccattagagctgcctgtacctagaaaaatagtaaatcagaaacaacatcacatcctggagggattgtggagattagtgtcaccataaaggacttgaaagatgcaggggggtgattctcaccacatcccctttcaactctcccatttggcctgtgcagaagacagatggatcttggagaatgacagtggattatcgtaagcttaaccaagtggtgactccaactgcagctgctgtaccagatgtggtttcattgcttgagcaaattaacacatctcctggtacctgatatgcagccactaacttggcaaatgcctttttctccattcctgtccataaggcccaccagaagcaatttgccttcagctggcaaggccagcaatatacctttactgtcttgcctcaggggtatatcaactctccagctttgtgtcataatcttattcagagagaccttgatcgctttttgcttccacaagatatcacactggtccattacattgaagacatgatgacattatgctgattggatccagtgagcaagaagtagtaaacacactggacttattggtgagacatttgtgtgcccagaggatgggaaataaatccaactaaaatgcaggatcttctacctcagtaaaatttctaggggtccagtggtgtggggcctgttgagatattctttctagggtgaaggataaattgctgcatttggcccctcctacaaccaagaaagaggcacaaagcctagcgggcctatttggattttggaagcaacacattcctcttttgggaatgttactccaactcatttatcgagtgacccgaaatgctgccagttttgagtggcgtccagaaaaggagaaggctctgcaacaggtccaagctgctgtgcaagctgctctgccacttaggccatataactcagaagatccaatggtgcttgaggtgtcagtggcagatagggatgctgtttggagcatttggcaggccccacaagtgaatcacagcagaggcctctaggattttggagcaaggccctgctgtcttctgcagatactctctttttgagacacagctattggcctgttactgggctttggtggaaactaaatgtttgactacgaatgatcaagtcaccatgtgacctgaactgctcatcatgaactgggtgctttctgacccatctagccataaagtaggtcatgcacagcaggattccatcatcaaatggaagtggtatatatgggatcaggctcaagcaggtcctgaaggcacaagtgagttacatgaggaagtggctcaaatgcccatggtctccactcctgccactctgccttctctccccgagcctgcaccgatggcttcatggggagttccctacgatcagttgacagcggaagagaagactagggcctggttcacagatggttctgcaagatatgcaggcaccaccctaaaggggacagctgcagcattacagcccctttctagcacacccctgaaggacagcagtgaagggaaatcttcccagtggctagaactttgagcagtgcacctgactgtgcactttgcatggaagaaaaaatgaccagatgtgcgattatacgctgattcatgggctgtagccaatggtttggctggatcaccagggacttggaagaagcatgattggaaaactggtgacaaagaaatttggggaagaggtatgtgtatggacctctctgagtggtcaaaaactgtgaagatatttctatcccatgtgagtgctcaccaatgggtgacctcagcagagaaggattttaataattaagtggataggacgacccgttctgtgaacaccactcagccactttccccagccaccctgtcatcgtccagtgggcccatgaacaaagtggccatggtggcagggatggaggttaagcatgggctcagcaacatggacttccactcaccaaggctgacctggctatggcgactgctgagtgcccaatttgccagcagcggagaccaacactgagccctcgatatgacaccattcctcagggtgatcagccagctacctggtggcaggttgattacattggacctcttccaccatggaaatggcagaagtttgtcctcactggaatagagacacttactctggatatgggtttgcctatcctgcatgcaatgcttctgccaagactaccatccatggactcatggaatgttttatccaccatcatggtgttctatacagcattgcctctgaccaaggcactcactttacagctaaagaagtgtggcagtgggctcacgctcctgtaattcactggtcttaccaagctccccatcatcctgaagcagctggattgatagaacagtggaatagccttttgaagtcacaattacaacatcaactaggtgacaatacctggaagggctggggtaaagttctccagaaggctgtatatgctctgagtcagtgtccaacatatggtactgtttctcccatagccaggattcacaggtccaggaatcaaggggtggaagtggaagtggcaccactcactaccacccctagtgatccactagcaaaatttttgcttcctgttcccacagcattacatcctgctggcctagaggtcttagttccagagggaggaacactaccaccaggaaacaccataacaattctattaaactggaaagttacaattgcatctggacactttgggctcctcctgcctttaagtcaacaggctaagatgggagttagagtgttggctggggagattgaccccgactatcaagatgaaatcagtctactactccacagcagagataaagaagagtatgcatggaatacaggagatgcattagggcgtctcttggtattaccatgccctgtgattaagatcaatgggaaactacaacagcccagtccaggcaggactacaacaaatggccccaaacccttccggaatgaaggcatgggtcaccccaccatggaaaataccacaacctgctgaggtacttgctgaaggcaaagcagatacacagaatgggtagtagaagaaggcagtcatcaataccagctactaccatatgaccagttgcagaaacaagtactgtaattgtcatgagtatttcctccttcttttattaaaaacatgtttgtgcatgtacacactttttaata-ttttttattatactttaagttctagggtacatgtgcacaacatgcaggtttgttacatatgtatacgtgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctccccactccccccaccccacaacaggccctggtgtgtgatgttccccttcctgtgtccatgtgttctcactgttcaattcccacctatgagtgagaacatgcagtgtttggttttttgtccttgtgatagtttgctgagaatgatggtttccatcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtatatgtaccacattttcttaatccagtctatcattgttggacattcgggttagttccaagtctttgctattgtgagtcgtgctgcaataagcatacgtgtgcatgtgtctttatagcagcatgatttatattcctctggggatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcaccacactgacttccacaatggttgaactagtttacggtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcaccggttgtttcctgactttttaatgattgccattttaactagtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccagtggtgatgagcactttttcatgtgactgttggctgcataaatgtcttcttttgagaagtgtctgttcatatccttcgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttcagttctttgtagattctggatattagccctttgtcagatgagtagattgcaaattttttctcccattctgtaggttgcctgctcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtcctggcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaatatttaagtctttaatctatctcgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccatttctcgtttttgtcaggtttgtcagagatcagatagtggtagatgtgtggtattatttctgagggctctgttctgttccattggtctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttcaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggcaatgtggactcttttttggttccatatgaactttaaagtagttttttccaattgtgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcaatatggccattttcacaatattgattcttcttatccatgatcatggaatgttcttccatttgtttgtgtcctcttttatttcgttgagcagtggtttgtagttctccttgaagaggtccttcacatcccttgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttgactctc----tgtctgttatcagtgtatacgaatgtttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagatattgggctgagatgatggggttttctagatatacaatcatgtcatctgcaaacagggacaatttgacttcctcttttcctaattgaataccctgtatttccttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagtgatgagagagggcatccatgtcttgtgccagttttcaaagtgaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagacagctcttattatttttagatacgtcccatcaatacctaatttattgagagtttttagcatgaaggctgttgaattttgccaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgctggattacatttattgatttgcatatgttgaaccagccttgcatcccagggatgaagcccacttgatcatggtggataagctttttgatgtgctgctagattcggtttgccagtattttattgaggatttttgtatcgatgttcagggatattggtctaaaattctctctttttgttgtgtctctgccaggctttggtatcaggatgatgctggcct s panTro2.7 27336756 10927 + 160261443 ---ctgccactgtcttatacaaagctttcatcatctcctccctgaattcc----taactt--tcatttctgatctttttttctggccaatctttg-taccaaagtgaactttctaaagcataaatctaatatttt-ttttttactaac-tttaata--acctctaatgggttccctctgattc--------tcaaaataaaaatccaaa---tccaaac--aaggttttttataacattgatgaagtgttccttgacatcctc-atctcttacaatttccccc---tctgca-ctcacaaaccttatttcaaaccctgcagtttggccacaaccggttatgtgcc--actccccaagcacagcatgtttcttcatgattcctt-------gc------acgttttgtttcctctata---tgaaatgttgttccccgcctggtgagctccttcata--ctctaagattaagctc-caatgtcactcctctgtaaagatttccctcactg-cccaATAGATTACTTATACC-T-ACCT-GTG-------GGATTATT--AGTCCTT----ACCTCTA-CT-GGGGCACCTTTAAAGAT----ACACTG-CAAGTACTGGTTTATGTATTTTTCTCCCTGAACAAATGAGACTGACATTGTGAGCTTGTAAAAGA----TAGGCATTGGCTCTTATTCCTTTTGATGTTCCCAGCTGTTTACCAAATACTCAAGAAATGTTAAT-GATGTCAAGAGAATTCAGCTTTCCACACAAAGAAAGAACCCCAGGA-CCCTCCAGAAAGTGCCACCCTTTCCCAGAGAGAACTCTTTAGG-CCCATG-TAG-----TCTTGCCCTGTGACTTAGCCCATAGCTAGAATAAGGGCAGAATATATTCCTT--------CAGCTTAAAAGAGAGACC---------G-ATGGGAACAGGG--CGG---------AGAGACAG--AA--AGAC--------AGAAGGA----AGGAGGAAG--AGATAGATGACCA-----CTCCTTTGATAATTCAGTGCACTTTTCCCC-CCT---AGAAAAAGGAA------TCTTGTTCCTTGATCAC-AAAATTGGAAAAGAAATAG--AACCTTCCCACAATGCTCTGTATTTAGAGG-ATACTT-AAAGAGCACTTGA----atttatttatttatttatttattCAAGTGTTCTTTA------AGTATACAGGTGAATGCT---------CTCCAGTTGGTGG--GAAATTTGTACTAG-----A-----A-ATAAGGAA-CTCAGCATCTCACTCACCTTAGTTTG---TCCTTCACCA------------------------GCCCATCTTTCTCT--TTCTGAG------------AGC--------------CTTT------GTCTC---CCTC--TC------------------------------------------------------TTCATGTCCAACAAGCAGAGAAAAATTAA-AGTGGC-AC----CAGGAAATT-TTT----------------CTAGCCTC--TATATCCA------AATAACCTCT------TA-A-AAAC-ACACTTGATTTACAACTACAACATATGCAACTGAGTATCTAAACTGTAAATCGAATGTAACCATTGTTCCTT--T--GG-ACA-TTTCCTTAATTTAA--TGAGTGATAAATAC--ACCCTTTAAGGACTATCAGTTCTAATCATTT-CCAAATGACTGA-TTTCCAGTGTGCT-GCTACCATACATT-TCCTTTATGTAAATAAATAAATATTTCTAAATTGCTTCCATTAATGTA-TAGAA-AAACATTT-GTTA-TTTATTTGTAAATGGTCATG--GGAG-GA-----TTATAAG--CA------------TAT----TGCC----A-----AATA-----AAATTCT------ATAACAATTCTCTTGGTATATTATGTTTGAAAATGCAATATTTATATAGTAGAAACCAT--AATATTAAAACCCA--ACA----AGCTTCTATAAGTTTGTCCTTTTTAA---A--TTTAAGCTA--TTAAA-----ATA-T-TTTT------CAATATGA---------GGAGAAATCTTTTAA--------TGCCAATTCCATATCAAAGGT--TAGGATTTTGCATTTATACAGAGCAGAGTTCATGAACTCCTGCTAATCATGTTAACAATCTACCAGGTTTCTAAAGGCTCAGCAGGG----GTTAGAATTAGAAGGCTCTGCCATCAACATCAATAACAGGAACAGTG---ACACTCA-GAAGAGTTTACCACCGTGCTCTCCTAAGAGGGTTCAG--------------CACATT----CAGGCACTGTAGCCCATA-ACTGAAGGAAATCTAT--AGTTAGTGATTCCAAAAGAGATCTAGAGGGACACATTATTTCAGATTTT-G-TT---TT-AAATAGT--GAG----TCT-------TAAAAG---------T-------------------------------TATATATG----------------------TGTGTAGGTATA--------CATAT------------TGTGTG--CGT----------GCT-AGTATATTATCAATA----------------------------------------------------------------------------------------------TTATGA---------------TAGTC---ATA-----C----TTTTTATTT-----------------------------------------------GAAA----GAGC-CTT-ACCACTCAAAAGG-ATT-TTGA----------G-TTCAAATTTTTGTTTTGGT-----AACAAGAAAGATGTGAATGAAATCTCAAATGTTTCTCTGGGAGGCAAG------AAAATGGTTTGAATCCCTAATT-------------------CAGAAT-GCAGCCTGTTGGACAAATGATGACTCAAAC---AATCTCATGTATCC-TGGGCCCAAGGCAGGT----GGCAAATCAAT--TCAGAAACACATAAAAACAAAGTGAATACCTTTGAGTTTACAGATATACATTAAAAGCTAATTTC-AAAGTATTTTTAA---------------------------------------------------AAAT-AAACTTTCCA-CAATATGAATTTGTTATCTA---T-GGAT--TTC-CACAGG-CAGGAAA---ACAT----G----T------CCTCTTCC---ACCCC--TTTTTCA---AATTCTCACCCAATT----------CCCTTTCTTCA--------------CTCCCTTCT----------------------------CCAT-------------------------------------------------------AAAAAACGCAATATTCAAATCTTAAGGCCAAGATGGCTAAGGTTTTTGTTGTTGTTGTTGTTTGAGACAGtgtgatgattaatactgagtgtcaacttgattggattgaaggatgcaaagtattgatcctgggtttgtctgtgagggtgttgccaaaggagattaacatttgagtcagtgggctgggaaatgcttaacccttaagcattaacatttgagtcagtgggctggaaaatgcttaaatccttaatctgggtgggcaccatctaatcagctgccagcacagccagaatataaagcaggcagaaaaatgtgaaaaggctagactggcctagcccccagcctacatcttcctcctgtgcaggatgcttcctgcccttgaacatcagactccaagttcttcagctttgggactcaggctggcttccttgctcctcagcttgcagcctattgtgggaccttgtgaccatgtgagttaatactacttgataaactctcctttttatacatatatatcctattagttctgtccctctagagaaccctaatacagattttggtatcaggagtggtcctagagaaacagaatattaaggatggagttcttttgttggttttggggtttctgcagttgactgcttaatatggttagacccaaaaatgctaaggactgtacttctaatagtatggaaaacactgatagtctttggtgtgaactgtttagagagttatacaaaataaatgcatttgacactcctgatttgccactcatgagagacaaggagtttagtgactctgtacataatacctttgactatatatggagaaccagtgaacataatgaagttggttggttgctcctaagatcactggacagtgatgaaagaaaatgatgaactcaaagattctaactcctggcttcagaagcagatactgagcctcaaatccgctaagattgccctgagtgggagttttatctcctgtagagaaagagcagaaattgtggaaaaacagatagctcttatcaagcaagtggctgacttgcaaagaaaggtgcaggcataacctcaccaggtgtctactgttaaagtgagggcattaattggaaaagagtgggaccctgcaacttggaatggggacgtgtggccctgatgaaggtggggacactgcgcttgtaaattctgatgaaccttttttgctagaagaaacagcttccccatccccagtagtgacaatatcccctccctgacccacactgccatcatcctttccatctttgtctgaggagataaaccctgcagtgcctgaggcaactgcgatggcctcccctgaggcagttgccaggcaagataatgttgattctcttcaggagccacccccaacacccctgtttatttctggacccataattaaagtcctagaggtgaggttcagagtgtgacccatgaggaggtgcactacacttgaaaagaactgcttgagttttctaatttatatacgcagaaatctggagaacaggcatggggatggatagtaagggtgtgggataatggtcaaaggaacatagagttagatcaggctgaatttattgatttgggcccactaagtagggattctgcatttaatgttgcagctcatggagttaaaaaaggctaaaatagttcatttgcttggctacctaaaatatggattaaaagatggtccactgtgagtgaggtggaaaagcttgatctcccttggtttaatagagaggaagggatccaaaggtttagggagattgagtttaggtggagtggattagtcactttagacctactcatcccggctgggagggtctagaagatatacccttgaacaatgctttgtgaaacagatttttcagggcagcagctgcaactttgaagagccctgtaattgctcttctctgtatgtcagatctaacagtaggaaccacagtcactcaactacaaaatttaaatactatgggaataattaaatcccgaggtggcaagggccaagtggcagcactcaaccatcaaaggcaagctactgtaatggacagcagaggcaaagcagcaatcagaacagcctgacttctatagaggtctggcatcggctaattaatcacagtgttcctagaagtaaaattgataggaagcctactgcattcctacttaatttatataagcagaaaacttctacgttgaatggacaaaagactaattcgaattataaaaacagagaatcacagcccctcaatcaatttccagacttggcccagtttacagacccagaaccccttgaatgaaggggaggctgggtcctcttgaggaaggatcccactacactaccgacaatttatgctgttaatctttctcccatccttccccatggaggcctccagacttttaccagagtacctgtgcattctggaaaggaaaataatcaggctttttggggactactggacactggctctgagctgacgttgattccaagggacccaaaatgtcattgtagtcctctggttaaagtaggggcttatggaggtcaggtaattaatggagttttagctcaggtctgacttacagtgggtccagtgggtccccggactcatcctgtggtcatttcaccagtgccagaatgcataattggcatagacatacttagcagctggcagaacccccacattggctccttgactggtagagtgagggctattatggtgggaaaggccaaatggaagccattagagctgcctgtacctagaaaaatagtaaatcagaaacaacatcacatcctggagggattgtggagattagtgtcaccataaaggacttgaaagatgcaggggggtgattctcaccacatcccttttcaactgtcccatttggcctgtgcagaagacagatggatcttggagaatgacagtggattatcgtaagcttaaccaagtggtgactccaactgcagctgctgtaccagatgtggtttcattgcttgagcaaattaacacatctcctggtacctgatatgcagccactaacttggcaaatgcctttttctccattcctgtccataaggcccaccagaagcaatttgccttcagctggcaaggccagcaatatacctttactgtcttgcctcaggggtatatcaactctccagctttgtgtcataatcttattcagagagaccttgatcgctttttgcttccacaagatatcacactggtccattacattgaagacatgatgacattatgctgattggatccagtgagcaagaagtagtaaacacactggacttattggtgagacatttgtgtgcccagaggatgggaaataaatccaactaaaatgcaggatcttctacctcagcaaaatttctaggagtccagtggtgtggggcctgttgagatattctttctagggtgaaggataaattgctgcatttggcccctcctacaaccaagaaagaggcacaaagcctagcggacctatttggattttggaagcaacacattcctcttttgggaatgttactccaactcatttatcgagtgacccgaaatgctgccagttttgagtggggtccagaaaaggagaaggctctgcaacagatccaggctgctgtgcaagctgctctgccacttaggccataaaactcagaagatccaatggtgcttgaggtgtcagtggcagatagggatgctgtttggagcatttggcaggccccacaagtgaatcacagcagaggcgtctaggattttggagcaaggccctgctgtcttctgcagatactctctttttgagacacagctattggcctgttactgggctttggtggaaactaaatgtttgactacgaatgatcaagtcaccatgtgacctgaactgcccatcatgaactgggtgctttctgacccatgtagccataaagtaggtcatgcacagcaggattccatcatcaaatggaagtggtatatatgggatcaggctcaagcaggtcctgaaggcacaagtgagttacatgaggaagtggctcaaatgcccatggtctccactcctgccactctgccttctctccccgagcctgcaccgatggcttcatggggagttccctatgatcacttgacagcggaagagaagactagggcctggttcacagatggttctgtaagatatgcaggcaccaccctaaaggggacagctgcagcattacagcccctttctaggacacccctgaaggacagcggtgaagggaaatcttcccagtggctagaactttgagcagtgcacctgactgtgcactttgcatggaagaaaaaatgaccagatgtgcgattatacgctgattcatgggctgtagccaatggtttggctggatcaccagggacttggaagaagcatgattggaaaactggtgacaaagaaatttggggaagaggtatgtgtatggacctctctgagtggtcaaaaactgtgaagatatttctatcccatgtgagtgctcaccaatgggtgacctcagcggagaaggattttaataattaagtggataggacgacccgttctgtgaacaccactcagccactttccccagccaccctgtcatcgtccagtgggcccatgaacaaagtggccatggtggcagggatggaggttaagcatgggctcagcaacatggacttccactcaccaaggctgacctggctatggcgactgctgagtgcccaatttgccagcagcggagaccaacactgagccctcgatatgacaccattcctcagggtgatcagccagctacctggtggcaggttgattacattggacctcttccatcatggaaatggcagaagtttgtcctcactggaatagagacacttactctggatatgggtttgcctatcctgcatgcaatgcttctgccaagactaccatccatggactcatggaatgctttatccaccaccatggtgttctatacagcattgcctctgaccaaggccctcactttacagctaaagaagtgtggcagtgggctcaggctcctgtaattcactggtcttaccaagctccccatcatcctgaagcagctggattgatagaacggtggaatagccttttgaagtcacaattacaacatcaactaggtgacaatacctggaagggctggggtaaagttctccagaaggctgtatatgctctgaatcagtgtccaaaatatggtactgtttctcccatagccaggattcacaggtcgaggaatcaaggggtggaagtggaagtggcaccactcactaccacccctagtgatccactagcaaaatttttgcttcctgttcccacagcattacatcctgctggcctagaggtcttagttccagagggaggaacactactaccaggaaacaccataacaattctattaaactggaaagttacaattgcatctggacactttgggctcctcctgcctttaagtcaacaggctaagatgggagttagagtgttggctgggatgattgaccccgactatcaagatgaaatcagtctactactccacagcagaggtaaagaagagtatgcatggaatacaggagatgcattagggcgtctcttggtattaccatgccctgtgattaagatcaatgggaaactacaacagcccagtccaggcaggactacaacaaatggccccaaacccttccggaatgaaggcatgggtcactccaccatggaaaataccacaacctgctgaggtacttgctgaaggcaaaggggatacacagaatgggtagtagaagaaggcagtcatcaataccagctactaccacatgaccagttgcagaaacaagtactgtaattgtcatgagtatttcctccttcttttattaaaaacatgtttgtgcatgtacacacttTTTAATAtttttttattatactttaagttctagggtacatgtgcacaacatgcaggtttgttacatatgtatacgtgtgccatgttggtgtgctgcacccattaactcgtcatttacattaggtatatctcctaatgctatccctcccacctacccccaccccacaacaggccctggtgtgtgatgttccccttcctgtgcccatgtgttcccactgttcaattcccacctatgagtgaaaacatgcagtgtttggttttttgtccttgtgatagtttgctgagaatgatggtttccagcttcatccatgtccctacaaaggacatgaactcatcattttttatggctgcatagtattccatggtgtataagtaccacattttcttaatccagtctatcattgttggacatttgggttagttccaagtctttgctattgtgagtagtgttgcaataagcatacgtgtgcatgtgtctttatagcagcatgatttatattcctctgggtatatacccagtaatgggatggctgggtcaaatggtatttctagttctagatccctgaggaatcaccacactgacttccacaatggttgaactagtttacggtcccaccaacagtgtaaaagtgttcctatttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactagtgtgagatggtatctcattgtggttttgatttgcatttctctgatggccattggtgatgagcattttttcatgtgtctgttggctgcataaatgtcttcttttcagaagtgtctgttcatatcctttgcccactttttgatggggttgtttgtttttttcttgtaaatttgtttcagttctttgtagattctggatattagccctttgtcagatgagtagattgcaaattttttctcccattctgtaggttgcctgttcactctgatggtagtttcttttgctgtgcagaagctctttagtttaattagatcccatttgtcaattttggcttttgttgccattgcttttggtgttttagacatgaagtcctggcccatgcctatgtcctgaatggtattgcctaggttttcttctagggtttttatggttttaggtctaatatttaagtctttaatctatctcgaattaatttttgtataaggtgtaaggaagggatccagtttcagctttctacatatggctagccagttttcccagcaccatttattaaatagggaatcctttccccatttctcgtttttgtcaggtttgtcagagatcagatagttgtagatgtgtggtattatttctgagagctctgttctcttccattggtctatatctctgttttggtaccagtaccatgctgttttggttactgtagccttgtagtatagtttgaagtcaggtagtgtgatgcctccagctttgttcttttggcttaggattgacttggcaatgtggactcttttttggttccatatgaactttaaagtcgttttttccaattctgtgaagaaagtcattggtagcttgatggggatggcattgaatctataaattaccttgggcaatatggccattttcacaatattgattcttcttatccatgatcatggaatgttcttccatttgtttgtgtcctcttttatttcgttgagcagtggtttgtagttctccttgaagaggtccttcacatcctgtgtaagttggattcctaggtattttattctctttgaagcaattgtgaatgggagttcactcatgatttgactctctgtttgtctgttatcagtgtatacgaatgtttgtgatttttgcacattgattttgtatcctgagactttgctgaagttgcttatcagcttaaggagattttgggctgagatgatggggttttctagatatacaatcaggtcatctgcaaacagggacaatttgacttcctcttttcctaattgaataccctgtatttccttctcctgcctgattgccctggccagaacttccaacactatgttgaataggagtgatgagagagggcatccctgtcttgtgccagttttcaaagggaatgcttccagtttttgcccattcagtatgatattggctgtgggtttgtcatagatagctcttattatttttagatacgtcccatcaacacctaatttattgagagtttttagcatgaaggctgttgaattttgccaaaggccttttctgcatctattgagataatcatgtggtttttgtctttggttctgtttatatgctggattacatttattgatttgcatatgttgaaccagccttgcatcccagggatgaaacccacttgatcatggtggataagctttttgatgtgctgctagattcggtttgccaatattttattgaggatttttgcatcgatgttca-ggatattggtct-aaattctctctttttgttgtgtctctgccaggctttggtatcaagatgatgctggcct s rheMac2.3 97190611 2541 - 196418989 ---CTGCGACTGTTTTATACAAAGCTTTTATCATATCCTCCCTGGATTCC----TAACTT--TCATTTCTGATC-TTTTTTCCGGCCAATCTTTG-TACCAAAGTGAACTTTCTAAAACATAAATCTAATATTTTCTCTTTTACTAAC-TTTAATA--ACCTCTGATGGGTTCCCTCTGGTTC--------TCAAAATAAAAATCCAAA---TCCAAAC--AACGTTCTTCATTACATTGCTGAAGTGTTCCTTAACATCCTC-ATCTGTTGCAATTTCCCCC---TCTGCA-CTCATAGACCTTATTTCAAACCCTGCAGTTTGACCACAACAGGTTATGTGCC--ACTCCCCAAGCACAGCATGTTTCTTCATGATTCTTT-------GC------ACGTTCTGTTTTCTCTATA---TGAAATGTTGTTCCCTGCCTGGTGAGCTCCTTCATA--CTCCAAGATTAAGCTC-CAACGTCACTCCTCTGTAAAGCTTTCCCTCACTG-CCCAACAGATTACTTATATC-T-ACCT-GTG-------GGATTATT--AGTCCTT----ACCTCTA-TT-GGGGCATCTTTAAAGAT----ATACTG-CAAGTACTGGTTTATGTATTTTTCTCCCTGAACAAATGAGACTGACATCATGAGTTCCTAAAAGA----TAGGCATTGGCTCTTATTCCTTTTGATGTCCCCAGCTGTTCACCAAATACTCAATAAATGTTAAT-GATGTCAAGATAATTCAACTTTCCACACAAAGAAAGAACCCCAGGA-CCCTCCAGAAAGTGCCACCCTTTCCCAGAAAGAACTCTTTAGG-CCCATG-TAG-----TCTTGCCCTGTGACTTAGCCCATAGCTAGAATAAGGGCAGAACATATTCCTT--------CAGCTTAAAAGAGAGACC---------A-ATGGGAACAGGG--CAG---------AGAGAGAG--AA--AGAA------AGAGAAGGA----AGGAGGAAG--AGAAAGATGACCA-----CTCCTTTGATAATTCAGTGCACCTTTCCCC-CC----AGAAAAAGGAA------TCTTGTTCCTTGATGGC-AAAATTGGAAAAGAAATAG--AACCTTCCCACAATGCTCTGTATTTAGAGG-ATACTT-AAAGAGCACTTGA--------ATTTATTTATTTATTCATTCAAGTGTTCTTTA------AGTATACAGGTGAATGCT---------CTCCAGTTGGTGG--GAAATTTTTACTAG-----A-----A-ATAATGAA-CTCAGCATCTCACTCACCTTAGTTTT---TCCTTCACCA------------------------GCCCGTCTTTCCCT--TTCTGAG------------AGT--------------CTTT------GTCTC---CCTC--TC------------------------------------------------------TTCATGTCCAACAAGCAGAGAAAAATTAA-AGTGGC-AC----CAGGAAATT-TTT----------------CTAGCCTC--TATATCCA------AATAACCTCT------TA-A-AAAT-AAACTTGATTTACAACTACAACATATGCAACTGAGTATCTTAACTGTAAATCTAATGTAACCATTGTTCCTT--T--GG-ATG-CTTCCTTAATTTAA--AGAGTGATAAATAT--ACCCTTTAAGGACTATCAGTTCTAATCATTT-CCAAATGACTGA-TTTCCAGTGTGTT-GCTACCATACATT-TCCTTTATATAAATAAA-AAAAGTTTCTAAATTGCTTCCATTAGTGTA-TAGAA-AAATATCT-GTTA-TTTATTTGCAAATGGTGATG--GGAG-GA-----TTATAAG--CA------------TAT----TGCC----A-----GATA-----AAATTCT------ATAACAATTCTCTTAGTATATTATGTTTGAAAATGCAATATTTATATAGTAGAAACTAT--AATATT------------A----AGCTTCTATAAGTTTGTCCTTTTAAA---A--TTTAAACTA--TTAAA-----ATG-T-TTTT------AAATATGA---------GGAAAAACCTTTTAA--------TGCCAATTCCATATCAAAGTT--TAGGATTTTGCATTTATACAGAGCAGAGTTCATGAACTCCTGCTAATCATGTTAACAATCTACCAGGTTTCTAAAGGCTCAGCAGGG----GTTAGAATTAGAAGGCTCTGCCATCAACATCAATAACAGGAACAGTG---ACACTCA-GAGGAGTTTACCACTGTGCTCTCCTAAGAGGGTTCAG--------------CACATT----CAGGCACTGTAACCCATA-ATTGAAAGAGATCTAT--AGTTAGTGATTCCAAAAGAGATCTAGAGGGATACATTATTTCAGATTTT-G-TT---TT-AAATAAT--GAG----TCT-------TAAAAA---------T-------------------------------TACATATG----------------------TGTGTAGGTATA--------CATAT------------TGT------GT----------GCT-AGTATATATACAATA----------------------------------------------------------------------------------------------TTATGA---------------TGGTC---ATA-----C----TTTTTATTT-----------------------------------------------GAAA----GAGC-CTT-ACCACTCAAGAGG-ATT-TTGA----------G-TTCAAATTTTTGTTTTGGT-----AACAAGAAAGATGCGAATGAAATCTCAAATGTTTCTCTGGGAGGCAAG------AAAATAGCTTGAATCCCTAATT-------------------CAGAAT-GCAGCCTGTTGGACAAATGATGACTCAAAT---AATCTCATGTATCC-TGGGCCCAAAGCAGGG----GGCAAATCAAT--TCAGAAACACATAAAAACAAAGTTAATACCTTTGAGTTTACAGATATACATTAGAAGCCAATTTC-AAAGTATTTTTAA---------------------------------------------------AAAT-AAACTTTCCA-CAATATGAATTTGTTATCTA---T-GGAT--TTC-CACAGG-CAGGAAA---ACGT----G----C------CCTCTTCC---ACCCCTATTTTTCGAATAATCCTCACCCAATT----------CCCTTTCTTCA--------------CTCCCTTCT----------------------------CCAT-------------------------------------------------------AAAAAAGGCAATATTCAAATCTTAAGGCCAAGATGGCTAAGGTGGTTGTTGTTGTTGTTGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- # synteny group 0 a score=1540.0 s hg18.7 27011923 2827 + 158821424 ctagtttgattgcactgtggtctgagagacagtttgttataatttctgttctt---ttatatttgctgaggattgcgttattccaactat-----gtggtcaattttggaataggtgtgtgtagtgctgaaaagaatgtatattctgttgatttggggtggagagttctgtagatgtctattaagttagcttggtgcagagctgaattcaattcctggatatccttgttaactttctgtctcgttgatctgtctaatgttgacggtggggtgttaaagtctcccattattattgtgtgggagtctaagtctctttgtaggtctctaaggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatccctttaccattatgtaatgaccttctttgtctcttttgatctttgttggtttaaagtctgttttatcagagactaggattgcaacccttgcctttttttgttttccatttgcttggtagatcttcctccatccctttattttgagcctatgtgtgtctctgcacatgagatgggtttcctgaatacagcacactgatgggtcttgactctatccaatttgccagtctgtgtcttttaattggagcatttagcccatttatatttaaggttaatattgttatgtatgaatttgaccctgtcattatgatgttagctggttattttgctcgttagttgatgcagtttcttcctagcctcaatggtctttacaatttggcatgtttttgcagtggctggtaccggctgttcctttccatgtttagtgcttccttcaggagttcttgtcgggcaggcctggtggtgacaaaatctctcagcatttgcttgtctgtaaaggattttatttctccttcacttatgaagcttagtttggctgcatatgaaattctgggttgaaaattctttctttaagaatgttgaatattggcccccactctcttctggcttgtagagtttctgctgagagatcagctgttagtctgatggacttccctttgtgggtaacccaacctttctccctggctgcccttaacattttttccttcatttcgacttcggtgaatctgacaattatgtgttttggagttgctcttctcgaggggtatcttcgtggcgttctctgtatttcctgaatttgaatgttggcctgccttgctaggttggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattctccccgtcactttcaggtacaccaaacagacgtagatttggtcttttcacatagtcccatatttctcggaggctttgttcatttcttttcattcttttttctctaaacttctcttctcacttcatttcattcatttcatcttccatccctgataccttttcttccagttgatcaaatcggctactgaagcttgtgcatttgtcatgtagttctcgtgccctggttttcagctccatcaggtcatttaaggactcctctgcattggttattctagttagccattcgtctaatcttttttcaaggtttttaacttctttgcaatgggttcaaactttctcctttagctcggagaagtttgattgtctgaagccttcttctctcaactcgtctcgtcaaagtcgttctctgtccagctttgttccattgctggtgaggagctgtgttcctttggaggaggagaggtactctgatttttagaattttcagtttttctgttctgtttttcccccatctttgtggttttatctacctttggtctttgttgatggtgacgtacagatggggttttggtgtggatgtcctttctgtttgttagttttacttttaacagtcaggaccctcagctgcaggtctgttggagtttgctggaggtccactccagaccctgtttgcctgggtatcagcagcagcagaggctgcagaacagcgaatattgctgaacagcaaatgttgctgtctgatcattcctctggaggtttcatctcagaggggtatccagccgtgtgaggtgtcagtctgcccctactgggtggtgcctcccagatacgccacttggggttcagggacccacttgaggaggcagtctgtccattctcagatctcaaactccatgctgggaaaaccactactctcttgaaagctgtcagacagggacatttaagtgtacagaggtttctgctgccttttgtttggctatgccctgctcccagaggtggagtctacagaggcaagcaggccttcttgagctgtggtgggctccacccagttcaagcttcctggctgctttatttacctactcaagcctcagcaatggcgggcacccttcccccagccttgctgccaccttgcagttcgatctcaggctgctgtgctagcaatgagcaaggctctgtgggcatgggaccctctgagctaggcacgggatataatctcctggtgtgccatttgctaagaccattggaaaagcacagtattagggtaggagtgacctgatttttcaggtgccatctgccacagctttgcttggctatgaaggggaattccctgaccccttgcacttcctggatgaggtgatgcctggccctgcttcggctcacgctcagtgtgctgcacccactgtcctgaacccactgtccaacaagccccagtgagatgaacccagtacctcagttggaaatgcagaaatcacctgtcttctgtgttgctcacgctgggagctgtagactggagctattcctattcggccatcttggaaccaccccGATTTTACCTC s panTro2.7 27348482 2830 + 160261443 ctagtttgattgcactgtgttctgagagacagtttgttataattcccctgactaggttatatttgctgaggattgcgttattccaactatcgttagtag--aattttggaataggtgtgtgtggtgctgaaaagaatgtatattctgttgatttggggtggagagttctgtagatgtctattaagttagcttggtgcagagctgaattcaattcctggatatccttgttaactttctgtctcgttgatctgtctaatgttgacagtgggatgttaaagtctcccattattattgtgtgggagtctaagtctctttgtaggtctctaaggacttgctttatgaatctgggtgctcctgtattgggtgcatatatatttaggatagttagctcttcttgttgaattgatccctttaccattatgtaatgaccttctttgtctcttttgatgtttgttggtttaaagtctgttttatcagagactaggattgcaacccttgcctttttttgttttccatttgcttggtagatcttcctccatccctttattttgagcctatgtgtgtctctgcacatgagatgggtttcctgaatacagcacactgatgggtctcgactctatccaatttgccagtctgtgtcttttaattggagcatttagcccatttatatttaaggttaatattgttatgtatgaatttgaccctgtcattatgatgttagctggttattttgctcgttagttgatgcagtttcttcctagcctcaatggtctttacaatttggcatgtttttgcagtggctggtaccggttgttcctttccatgtttagtgcttccttcaggagttcttgtcgggcacgcctggtggtgacaaaatctctcagcatttgcttgtctgtaaaggattttatttctccttcacttatgaagcttagtttggctgcatatgaaattctgggttgaaaattctttctttaagaatgttgaatattggcccccactctcttctggcttgtagagtttctgccgagagatcagctgttagtctgatggacttccctttgtgggtaacccgacctttctccctggctgcccttaacattttttccttcatttcgacttcagtgaatctgacaattatgtgtgttggagttgctcttctcgaggggtatctttgtggcgttctctgtgtttcctgaatttgaatgttggcctgccttgctaggttggggaagttctcctggataatatcctgcagagtgttttccaacttggttccattctccccgtcactttcaggtacaccaatcagatgtagatttggtcttttcacatagtcccatatttcttggaggctttgttcatttcttttcattcttttttctctaaacttctcttctcgcttcatttcattcatttcatcttccatccctgataccttttcttccagttgatcaaatcggctactgaagcttgtgcatttgtcatgtagttctcgtgccctggttttcagctccatcaggtcatttaaggactcctctgcattggttattctagttagccattcgtctaatcttttttcaaggtttttaacttctttgcaatgggttcgaactttcttctttagctcggagaagtttgattgtctgaagccttcttctctcaactcgtctcatcaaagtcgttctctgtccagctttgttccattgctggtgaggagctgtgttcctttggaggaggagaggtactctgatttttagaattttcagtttttctgttctgttttttccccatctttgtggttttatctacctttggtctttgttgatggtgacgtacagatggggttttggtgtggatgtcctttctgtttgttagttttccttttaacagtcaggaccctcagctgcaggtctgttggagtttgctggaggtccactccagaccctgtttgcctgggtatcagcagcag---aggctgcagaacagcgaatattgctgaacagcaaatgttgctgtctgatcattcctctggaggtttcatctcagaggggtatccagccatgtgaggtgtcagtctgcccctactgggtggtgcctcccagatacgccacttgggggtcagggacccacttgaggaggcagtctgtccattctcagatctcaaactccatgctgggaaaaccactactctcttgaaagctgtcagacaggagcatttaagtgtacagaggtttctgctgccttttgtttggctatgccctgctcccagaggtggagtctacagaggcaggcaggccttcttgagctgtggtgggctccacccagttcaagcttcctggctgctttgtttacctactcaagcctcagcaatggtgggcacccttcccccagccttgctgccaccttgcagttcgatctcaggctgctgtgctagcaatgagcaaggctctgtgggcatgggaccctctgagctaggcacgggatataatctcctggtgtgccatttgctaagaccattggaaaagcacagtattagggtgggagtgacctgatttttcaggtgccgtctgccacagctttgcttggctatgaaggggaattccctgaccccttgaacttcctagatgaggtgatgcctggccctgctttggctcacgatcagtgtgctgcacccactgtcctgaacccactgtccaacaagccccagtgagatgaacccagtacctcagttggaaatgcagaaatcacctgtcttctgtgttgctcacgctggtagctgtagactggagctattcctattcggccatcttggaaccaccccGATTTTACCTC s rheMac2.unknown 0 0 + 0 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- # synteny group 0 a score=-2785.8 s hg18.7 27014750 6653 + 158821424 catgtacacacttataccaagaaaatatctccaatttatttccttttccctttgtcatgtgacataagatttattgacttaatatcagcatctaagtattgttaactttatgtaatagcatttgggttggggattgatatatttccggttgtatgaagaatagttgtattatgttaggcataattatgaccttactattatctttatttgaagattatgtatgatctcaggaga-tgtgtatgggttcaagttgacaagaggtagacttgtgatggttaatactgagtgtcaacttgattggattgaaggatgcaaagtattgatcctgggtttgtctgtgagggtattaccaaaggaggttaacatttgagtcagtgggctgggaaaagaagacccacccttaatctggctgggcaccatctattcagctgccagcagagccagaatatatagcaggcagaaaaatgtgaaaacacaggactggcctagcctcccagcctacatctttctcctgtgctggatgcttcctgccctcgaacatcggactccaagttgttcagctttgggacttggactggtttccttgctcctcagcttgcggacagcctactgggggaccttgtgatcgtgtgagttaatactacttaataaactcccctttatatatatacatatata--------tcattagttctgtccctctagagaatcctaactaatacagacagggtctcactctgttgcccaggctggagagcagtggcatgattttggctcactgcaacctccagctccggagttcaagtgattctcatgcctcagcctcccaagtagctaggattacaggtgcatgccaccacacccagctaatttttgtatttttattagatatggggtttcaccatgttggccaggctggtctcgaactcctgatctcaagtgatctgcctgcctcagcctcc--caaagtgctaggattacaggtgAGATGGCTGTTAATCT--------TCTGGTATCTTCTCATTTTGTCTTTGGGAAGCCCTACAAGTA---TAAAATATCTGC-ATTTCCTATTGC-TGCCTGTAG------AAGGAAGACAGCATAACACATCATATCAATTTGTT--CTGAAGCTG-----------------AAG-------------GAAACATGATAGTGATCTCTAAGGCAGTGT----TTATT----TCATGGTAGAGT---CGTCAAGACTATCTATATACATAATTTGCATTT-TAGTCTTCTGGATCTTTAATTTTTATAAAGGTTGAACATTATATATCCATATGTTTATAATG--CCCAAATTT-GTTTTCC-TT-TAAGCTCAGCATCACTGTAGCAGTTACTGCACACTACATAAAGACTTTTGTGAGATTT-------------------------------------------TAAATAATAAGCTCAATTTGAAATCTTTTCAGAAAAA----------ACTAACTCAATAAGGCCAAAAC------------------------AGTGATTTCATAAT----TATCTCAATCT-TATTTG-CCCCCAACTCTAAGAAGTATAACCATGGTAGTCATGGCAATTTACACTAGGAA----GCTAAA-----------TTGTCTCTTTTCTAAATTACCATATGTACAAATTCTGCCTTTGGTGAAAGTGCTA---------------------TGTTACTTGCAATCCATGGAATAGCT-ATTCATGTCTGAAGACATTCAAACTGACA-------AAAAA------GA-AATAA----AAAAGAGAGACGGGTAAATTAATTGGAATATATAGA-AAG--AATTTACC-AGAGTCAGCAATTATTCT-CCATTACTTTCTTTCCATATGCACT-TTACCACAGCAAACGGTC--------ACGAAC----TAAA-CTAAACTGTTGT----CTGACTCAGTTGTTTGACAATTCCC------------TATCTTCTTTA-AGAG-GAACCAATGGGTATATTTCCCTTGTAATTT----------TTGAGG------GTTTTCCTCTTTTTC--AATATTAATATTATAACAGAAA-AATTTGCTTTACTGTATTA--TTAAAATTTTGCTCAACATTTCAA-AAACAGCAtttttt-------------------------------------------------------------------------------------------a-----gttgtagtaaaatctatacataaaatttac--ttataaccatttatag------atataca-gttcagtggt-tttaaataaattcatattagtgtgcaacc--atcaccaccatcaatctacagaactttttcatcttcccaaacttaaatcccatatccattaaacaataactc-------cccaggac------------cccttcc--tccag----------cccctggtaacc---attctactttctatcactatgaatttga----------ctactctaggtatcttgtataagtgaaataattcagtatttgtccttttgtg-------tggcttatttcacttagcataatatcttcaaggttcattcatat-tgt--aatatgcaccagaatt----tccattttaaggctgagcaatattccattgtatgtatatgccacctcttgtttatccatttatctgtctatagacagttcaggtgcttccacaggttagctcttacaaataatgctgctataaacatgag---tgtacaaatatctatttgagtccctgcttttgtttcttttga--gtatatatccagaagtagaattgctggaccatatggtcattttatctctaatt-ttttgaagaaccaccatactggtttccatagtggctgtaccattttatgttcccatcagc-aatgcacaagggttccaaggtatctccacaaatttgccaacacttgttattttctattttgttattattattattattatagccatcttaataggtatgaagtagtatctcgttgtagttttgatttgcatttccctaatgattaaagattttgagc----atcatttcatatgcttattggtcatttgtatattttctttggaaaaatgtttattgaagttctttgtccgttttttaatctggttgtttggttttttaattg----t--tgaactgtaggagttatttatgt---agtctggctatttaaccccttatcagatacaaggtttga-aaatattttcttccattccgtgggttgccttttcactctgttgatagtatcctaactatagtttt----cagctttaataatttcagAAATATAAATGATACAAGCTTCTTAAAAATCATTTGAAAGT----TTATTTAAATGTTTAG-CTTGTTTAGTTTTGTAAATTTTGACTAGTAAATTGTTAATTTTATTTTTTTCTTTCAGCCT-TCTGAAGATGCCAAAACAAAAAACT-AAAATTAAAATATTATAACTCAAAATTCACAAAattagggaggaagtagagcaagatggtggaataaaaggctccacagatcatctcctccacaagaacaccaactgaacaactatctacacagaaaaaaaaaaaaaacaccttcataaaagccaaaaatcaggtaagcactcatagtacctggttttaacttcatatcattgaaagaggcactgaagagacagaaaaaacagtcttgaatccctgatgccacctctccagtcctggcaatggaggtgtggtacagagagcacttctgggcactgggggagggagaacacagcaattgtgacacactgaactcaagtgctgtcctggtagagcagaaaggaaaaccagaccaaactgacactcacccacaaaggaagcatttaaaccagccctagccagaagagaatcactgatcccagtggtcagagcttgagttcccacaaaccttagcactgccgaccagtactctgtgtctccaaataaacctgaaaggcagtctaggcctt----tctgcaacttttagatgagtcctaatgctgaactaggcccagagatagtaaagtggaggggcatgcatcatagtgagacaccaattggggcagccaagggagtgtctaactggtatcatccatcccctaaccccaggctgcacagctcacagcttcaaaagagaccctcctctttctcccgcttgaggagaggagagggaagagtggggaggactttgtcttgcatcttggataccagctcagccacagtagga-aagagcgctggtcagtcatgaggtccccattccaggccctagctcccagatgacatttctacatacaccctgggccagaagggaacatgcttccttgaaggaaaggacccagtcctggcagcattcatcccctgctaactgaagaacccttgggccctgaataaccagtagtgatactcaggtactacatcaagggccttggatgagcctctgagacttgctggcttcaggtaacagcatgaacatgaggggtagagcaccaaagaagctcctggggtccccgattccaggacttgattattggatggcttttctggatctgccctgggccagcggagagtccattgccctgaagggtgagtcccacaccaggcagcattcaccacaagctgacttaagagcctttggtccttaagggaacatcagcagtagtctgacagtattcctggtggcctgtggtggtggtggctatggggtgaggctcctcctttggaaaggggaaggaagagtgggaaggactgcatcttgtggtttaagtgccagctcagccacagtacaataaaacactagatagacttctaaggttttttactctggtccctaactcccagatggcatcactggacccacaggaacttgggggaccttgctgccctgaaggagaggagacaggcgtggctggctttgccactggctgattgtagagccccagggccttgagcaaacacaggcagtttccagaaagtagttacagtggtgggccttgggcaagacccagtgctgtgctggcttcaagcctgacccagcccagtcataatggtggtggccacagaggtgcttgtgtccctccacccatagctttagggggctcagaacagagagagagaaagagagagagagggagagagagactctgtatgtttgggagaaagtaagagaagagatcaagagtctctgcctggtaatccagagaattctcctgatcttgtccaaga-ccatcaaggcggtacctctacaagtctgcaagaaccacagtgttactgggcttggggtgccccctaaagcagatacagcttagatcacaacactcaagtcctttaaaatatctggaaagccttcccaagaaggattggtacaaataaccccagacagtgaagactacaataaatacttaaactcttcaatgcccaaacaccaaagaacatctactagcatcaataccatccaggaaaacatgacctcaccaaatgaactaaataaggcaccagaggccaatcctggagaaacagagatatgagaccttttagacagagaattcaaaatagctgtgttgaggaaacggaaagaaattcaagttaacacagagaagacatttaaaattctatcagataaatttaataaagagattgaaataacaaaaaagaaccaagcagaaattctggagctgaaaaatgcaattggcatactgaagaatgcactagagtcctttaatagcagaactgatcaagcagaagaaagaattagtgagcttgaagacagcctatttgaaaatgcacagaggagacgaaagaaaaaaagaataaaaaacaatgaagcatgcctacaggacctagaaaatagcttcaatagggaaaatctatgagttattggccttaaagaggaggtagagaaagggataggggtagaaagtttattcaaggagataataacagagaatttcccaaacctagagaaaaatatcagtatctacatataagaagcttatacaacaccaagcagatttaaccc----aagactacctcaaggcatttaatagtcaaactcccaaaggtcaaggataaagaaagaattgtaaaagaagtaagagaagagaaacaaatagaataaaatggagctctaatatgtctggcatcagacttttcagtggaaacctcacaacccaggacagagtggcatgacatatttaaagtgctgaag----aaaaaaaaaaaacttttgccctagaatagtatatttgattaaaatatccttcaaacacaaaggagaaataagacttacccagacaaacaaaagctgaggaatttcatcaacaccagacctgtcctacaagaaatgttaaagggagtacttaaatcagaaagaaaaggacattaatgaacaataagcaaccaccagaaggtacaaaactcagtggtaatagtaagtacacaaaaaaacacagaatattataacattgtaactgttatactcttatgctaagtagagagactacacgatgaaccaatcaaaaatagtaactacaacaacttttcaagacatagtgctattatatatatgtaaatatatatgtatat-aaatatatatatatatttatatatatatatatatatatatatatagagagagagagagagagagagagagagagagagaAACAACTggctcagcacaatggctcatgcctgtaatcccagtactttgggaggtcaaggagggtggatcacttgaggccaggagttcaaggccagcttgggcaacatgg-aaaaccctgtctctccaaataattttaagaaataagctgagtgtggtggtgtgcacctgtgtggtctcagctactagggaggatgaggtgggaggattgcttgagccttggaggcagaggttgcagtgagtcaagatcacgccattgcactctagcctgggcaacaaagcaagaccctgtctcaaaaaaataaataaatagaaacaacaaaaagttaaaaagtggggagatgaagttaagccacagagt s panTro2.7 27351312 6608 + 160261443 catgtacacacttataccaagaaaatatctccaatttatttccttttccctttgtcatgtgacataagatttattgacttaatatcagcatctaagtattgttaactttatgtaatagcatttgggttggggattgatacatttccggttgtatgaagaatagttgtattatgttaggcataattatgaccttactattatctttatttgaagattatgtatgatctcaggaga-tgtgtataggttcaagttgacaagaggtagacttgtgatggttaatactgagtgtcaacttgattggattgaaggatgcaaagtattgatcctgggtttgtctgtgagggtattaccaaaggaggttaacatttcagtcagtgggctgggaaaagaagacccacccttaatctggctgggcaccatctattcagctgccagcagagccagaatatatagcaggcagaaaaatgtgaaaagacaggactggcctagcctcccagcctacatctttctcctgtgctggatgcttcctgccctcgaacatcggactccaagttcttcagctttgggacttggactggtttccttgctcctcagcttgcggacagcctactgggggaccttgtgatcgtgtgagttaatactacttaataaactcccctttatatatatacatatata--------tcattagttctgtccttctagagaatcctaactaatacagacagggtctcactctgttgcccaggctggagagcagtggcatgattttggctcactgcaacctccagctccggagttcaagtgatgctcatgcctcagcctcccgagtagctaggattacaggtgcatgccaccacacccggctaatttttgtatttttattagatatggggtttcaccatgttggccaggctggtctcgaactcctgatctcaagtgatctgcctgcctcagcctcc--caaagtgctaggattacaggtgAGATGGCTGTTAATCC--------TCTGGTATCTTCTCATTTTGTCTTTGGGAAGCCCTACTAGTA---TAAAATATCTGC-ATTTCCTATTGC-TGCCTGTAG------AAGGAAGACAGCATAACACATCATATCAATTTGTT--CTGAAGCTG-----------------AAG-------------GAAACATGATAGTGATCTCTAAGGCAGTGT----TTATT----TCATGGTAGAGT---CGTCAAGACTATCTATATACATAATTTGCATTT-TGGTCTTCTGGATCTTTAATTTTTATAAAGGTTGAACATTATATATCCATACGTTTATAATG--CCCAAATTT-GTTTTCC-TT-TAAGCTCAGCATCACTGTAGCAGTCACTGCACACTACATAAAGACTTTTGTGAGATTT-------------------------------------------TAAATAATAAGCTCAATTTGAAATCTTTTCAGAAAAA----------ACTAACTCAATAAGGCCAAAAC------------------------AGTGATTTCATAAT----AATCTCAATCT-TATTTG-CCCCCAACTCTAAGAAGTATAACCATGGTAGTCATGGCAATTTACACTAGGAA----GCTAAA-----------TTGTCTCTTTTCTAAATTACCATATGTACAAATTCTGCCTTTGGTGAAAGTGCTA---------------------TGTTACTTGCAATCCATGGAATAGCT-ATTCATGTCTGAAGACATTCAAACTGACA-------AAAAA------GA-AATAA----AAAAGAGAGACGGATAAATTAATTGGAATATATAGA-AAG--AATTTACC-AGAATCAGCAATTATTCT-CCATTACTTTCTTTCCATATGCACT-TTACCACAGCAAACGGTC--------ACGAAC----TAAA-CTAAACTGTTGT----CTGACTCAGTTGTTTGACAATTCCC------------TATCTTCTTTA-AGAG-GAACCAATGTGTATATTTCCCTTGTAATTT----------TTGAGA------GTTTTCCTCTTTTTC--AATATTAATATTATAACAGAAA-AATTTGCTTTACTGTATTA--TTAAAATTTTGCTCAACAGTTCAA-AAACAGCAtttttt-------------------------------------------------------------------------------------------a-----gttgtagtaaaatctatacataaaatttac--ttataaccatttatag------atataca-gatcagtggt-tttaaataaattcatattagtgtgcaacc--atcaccaccatcaatctacagaactttttcatcttccctaacttaaatcccatatccattaaacaataactc-------cccaggac------------cccttcc--tccag----------cccctggtaacc---attctactttctatcactatgaatttga----------ctactctaggtatcttgtataagtgaaataattcagtatttgtccttttgtg-------tggcttatttcacttagcataatatcttcaaggttcactcatat-tgt--aatatgcaccagaatt----tccattttaaggctgagcaatattccattgtatgtatatgccacctcttgtttatccatttatctgtctatagacagttcaggtgcttccacaggttagctattacaaataatgctgctataaacatgag---tgtacaaatatctatttgagtccctgcttttgtttcttttga--gtatatatccagaagtagaattgctggaccatatggtcattttatctctaatt-ttttgaagaaccaccatactggtttccatagtggctgtaccattttatgttcccatcagc-aatgcacaagggttccaaggtatctccacaaatttgccaacacttgttattttctattttgttattattattattattatagccatcttaataggtatgaagtagtatctcgttgtagttttgatttgcatttccctaatgattaaagattttgagc----atcatttcatatgcttattggtcatttgtatattttctttggaaaaatgtttattgaagttctttgtccgttttttaatctggttgtttggttttttaattg----t--tgaactgtaggagttatttatgt---agtctggctatttaaccccttatcagatacaaggtttga-aaatattttcttccattccgtgggttgccttttcactctgttgatagtatcctaactatagtttt----cagctttaataatttcagAAATATAAATGATACAAGCTTCTTAAAAATCATTTGAAAGT----TTATTTAAATGTTTAG-CTTGTTTAGTTTTGTAAATTTTGACTAGTAAATTGTTAATTTTATTTTTTTCTTTCAGCCT-TCTGAAGATGCCAAAACAAAAAACT-AAAATTAAAATATTATAACTCAAAATTCACAAAattagggaggaagtagagcaagatggtggaataaaaggctccacagatcatctcctccacaagaacaccaactgaacaactatctacacag--aaaaaaaaaaaacaccttcataaaagccaaaaatcaggtaagcactcatagtacctggttttaacttcatatcattgaaagaggcactgaagagacagaaaaaacagtcttgaatccctgatgccacctctccagtcctggcaatggaggtgtggtacagagagcatttctgggcactgggggagggagaacacagcaattgtgacacactgaactcaagtgctgtcctggtagagcagaaaggaaaaccagaccaaactgacactcacccacaaagtaagcatttaaaccagccctagccagaagagaatcactgatcccagtggtcagagcttgagttcccacaaaccttagcactgccgaccagtactctgtgtctccaaataaacctgaaaggcagtctaggcctt----tctgcaacttttagatgagtcctaatgctgaactaggcccagagatagtaaagtggaggggcatgcaacatagtgagacaccaattggggcagccaagggagtgtctaactggcatcatccgtcccctaaccccaggctgcacagctcacagcttcaaaagagaccctcctctttctcccgcttgaggagaggagagggaagagtggggaggactttgtctcgcatcttggataccagctcagccacagtagga-aagagtgctggtcagtcatgaggtccccattccaggccctagctcccagatgacatttctacatataccctgggccagaagggaacacgcttccttgaaggaaaggacctagtcctggcagcattcatcccctgctaactgaagagcccttgggccctgaataaccagtagtgatactcaagtactacatcaagggccttggatgagcctctgagacttgctggcttcaggtaacagcatgaacatgaagggtagagcaccaaagaagctcctggggtccccgattccaggacttgattattggatggcttttctggatctgccctgggccagcggagagtccattgccctgaagggtgagtcccacaccaggcagcattcaccacaagctgacttaagagcctttggtccttaagggaacatcagcagtagtctgacagtattcctggtggcctgtggtggtggtggctatggggtgaggctcctcctttggaaagggaaaggaagagtgggaaggactgcatcttgtggtttaagtgccagctcagccacagtacaataaaacactagatagacttctaaggttttttactctggtccctaactcccagatggcatcactggacccacaggaacttgggggaccttgctgccctgaaggaaaggagacaggcatggctggctttgccactggctgattgtagagccccagggccttgagcaaacacaggcagtttccagaaagtagttacagtggtgggccttgggcaagacccagtgctgtgctggcttcaagcctgacccagcccagtcataatggtggtggccacagaggcgcttgtgtccctccacccatagctttagggggctcagaacagagagagagaaagagagagagagg--gagagagactctgtatgtttgggagaaagtaagagaagagatcaagagtctctgcctggtaatccagagaattctcccgatcttgtccaaga-ccatcaaggcggtacctctacaagtctgcaagaaccacagtgttactgggcttggggtgccccctaaagcagatacagcttagatcacaacactcaagtcctttaaaatatctggaaagccttcccaagaaggattggtacaaataaccccagacagtgaagactacaataaatacttaaactcttcaatgcccaaacaccaaagaacatctactagcatcaataccatccagcaaaacatgacctcaccaaatgaactaaataaggcaccagaggccaatcctggagaaacagagatatgagaccttttagacagagaattcaaaatagctgtgttgaagaaacggaaagaaattaaagttaacacagagaagacatttaaaattctatcagataaatttaataaagagattgaaataacaaaaaagaaccaagcagaaattctggagctgaaaaatgcaattggcatactgaagaatgcactagagtcctttaatagcagaactgatcaagcagaagaaagaattagtgagcttgaagacagcctatttgaaaatgcacagaggagacgaaagaaaaaaagaataaaaaacaatgaagcatgcctacaggacctagaaaatagcttcaatagggaaaatctatgagttattggccttaaagaggaggtagagaaagggataggggtagaaagtttattcaaggagataataacggagaatttcccaaacctagagaaaaatatcagtatctacatataagaagcttatacaacaccaagcagatttaaccc----aagactacctcaaggcatttaatagtcaaactcccaaaggtcaaggataaagaaagaattgtaaaagaagtaagagaagagaaacaaatagaataaaatggagctctaatatgtctggcatcagacttttcagtggaaacctcacaacccaggacagagtggcatgacatatttaaagtgctgaag-----aaaaaaaaaaacttttgccctagaatagtatatttgattaaaatatccttcaaacacaaaggagaaataagacttacccagacaaacaaaaactgaggaatttcatcaacaccagacctgtcctacaagaaatgttaaagggagtacttaaatcagaaagaaaaggacattaatgaacaataagcaaccaccagaaggtacaaaactcagtggtaatagtaagtacacaaaaaaacacagaatattataacactgtaactgttatactcttatgctaagtagagagactaaacgatgaaccaatcaaaaatagtaactacaacaacttttcaagacatagtgcaattatatatatgtaaatatatatgtatat-aaatata----------tatatagagagagagagagagacagacagacagagagagagagagagagagagagagagagaAACAACTggctcagcacaatggctcatgcctgtaatcccagtactttgggaggtcaaggagggtggatcacttgaggccaggagttcaaggccagcttgggcaacatgg-aaaaccctgtctctccaaataattttaaaaaataagctgagtgtggtggtgtgcacctgtgtggtctcagctac-agggaggatgaggtgggaggattgcttgagccttggaggcagaggttgcagtgagtcaagatcacgccattgcactctagcctgggcaacaaagcaagnccctgtctcTTGAGAAGTAATAAATAGAAACAACAAAAAGTTAAAA----------------------------- s rheMac2.3 97198918 6566 - 196418989 CATGTATATACTTATACCAGGAAAATATCTTCAATTTATTTCCTTTTCTCTTTGTCATGTGACATAAGAATTGCTGACTTAATATTAGCATCTAAGTATTGTTAACTTTATGTAATAGCATTTGGGTTGGGGATTGATACGTTTCCAGTTGTACAAAGGACAGTTGTATAATGTTAGGCGTAATTATGACCTTACTATTGTCCTTATTTGAAGATTATGTATGATCTCAGGAGATTGTGTATGGGTTCAAGTTGACAAGAGGTAGACTTGTGATGGTTAATACTGAGTGTCAACTTGATTGGATTGAAGGATGCAAAGTATTGATCCTGGGTT----TTTGAGGGTATTACCAAAGGAAGTTAACATTTGAGTCAGTGGGCGAGGAAAAGCAGACCCACCCTTAATCTGGCTGGGCACCATCTATTCAGTGGCTAGCACAGCCAGAATATATAGCAGGCAGAAAAACATGAAAAGACAGGACTGGCCTAGCCTCCCAGCCTACATCTTTCTCCTGTGCTGGATGCTTCCTGCCCTCGAACATCAAACTCCAAGTTCTTCAGCTTTGGGACTTGGACTGGTTTCCTTGCTCCTCAGCTTGCAGACAGCCTATTGGGGGACCTTGTGATCATGTGAGTTAGTACTACTTAATAAACTCCCGTATATATATGTGCGTGTATATACATGTCTTATTAGCTCTGTCCCTCTAGAGAACCCTAACTAATACAGACAGGTCCTCACTCTGTTGCCCATGCTGGAGAGCAGTGGCATGATTTTGGCTCACTGCAACCTCCAGCTCCGGAGTTCAAGTGACTCTCATGCCTCAGCTTCCTGAGTAGCTGGGATTACAGGTGCATGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGATATGGGGTTTCACCATGTTGGCCAGTCTGGTCTCAAACTCCTGATCGCAAGTGATCTGCCCACCTCAGCCTCC--CAAAGTGCTGGGATTACAGGGGAGATGGCTGTTAATCG--------TCTGGTATCTTCTCATTTTTTCTTTGGGAAGCCCTACTAGTA---TAAAATATCTGC-ATTTCCTATTGC-TGCCTGTAG------AAGGCAGACAGTGTAACACATCATATCAACTTGCT--TTGAAGCTG-----------------AAG-------------GAAACATGATAGTGATCTCTAAGGCAGTGT----TTATT----TCATGGTAGAGT---CGTCAAGACTATCTATATACATAATTTGCATTT-TAGTCTTCTGGATCTTTAATTTTGATAAAGGTTGAACATTATATATCCATATGTTTACAATG--CCCAAATTT-GTTTTCC-TT-TAAGCTCAGCATCACTGTAGCAGTTACTGCACAC----TAAATACTTTTGTGAGATTT-------------------------------------------TAAATAATAAGTTCAATTTGAAATCTTTTCAGAAAAA----------ACTAACTCAATAAGGCCAAAAC------------------------AGTGATTTCATAAT----AATCTCAATAT-TATCTG-CCCGCAACTCTAAGAAGTATAACCATGGCAGTCATGGCAATTTACACTAGGGA----GCTACA-----------TTGTCTTTTTTCTAAATTACAATACATACAAATTCTGCCTTTGGTGAAAGTGCTGTTACTTGCAATCCAAAGGTGCTGTTACTTGCAATCCATGGAATAGCT-ATTCACGTCTGAAGACATTCAAACTGACA-------AAAAA------GA-AATAA----AAAAGAGAGAGGGATAAATTAATGGGAATATATAGA-AAG--AATTTACC-AGAGTCAGCAACTGTTCT-CCATTACTTTCTTTCCATATGCACT-TTACCACAGCAAACGGTC--------ACGAAC----TAAA-CTAAACCGTTGT----CTGACTCAGTTGTTTGACAATTCCC------------TATCTTCTTTA-AGAG-GAACCAATGTATATATTTCCCTGGTAATTT----------TTGAGG------G-TTCCCCCTTTTTC--AATATTAATATTATGACAGAAA-ACTTTGCTTTACTATATTA--TTAAAAATTTGCTCAACATTTCAA-AAATAGCATTTTTT-------------------------------------------------------------------------------------------A-----GTTGTAGTAAAATCTGTACATAAAATTTAC--CTATAACCATTTATAG------ATATACA-GTTCAGTGGT-TTTAAATAAATTCACACTAGTGTGCAACCTTATCACCACCATCAATCTGCAGAACTTTTTCATCTTCCCAAACTTAAATTCCATATCCATTAAACAATAACTC-------CCCAGGAC------------CCCTTCC--TCCAG----------CCCCTGGTAACC---ACTCTACTTTCTATTGCTATGAATTTGA----------CTACTCTAGGTATCTCGTATAAGTGAAATAATTCAGTATTTGTCCTTTTGTG-------TAGCTTACTTCACTTAGCATAATATCTTCAAGGTTCATCCATAT-TGT--AATATGCACCAGAATT----TCCTTTTTAAGGCTGAGCAATATTCCATTGTATGTATATGCCACATCTTGTTTATCCATTTATCCGTGTATAGACAGTTCAGGTGCTTCCACATTTTAGCTATTACAAATAATGCTGCTATAAACATGAG---TGAACAAATATCTATTTGAGTCCCTGCTTTTGCATCTTTTGG--GTATATATCCAGAAGTAGAATTGCTGGGCCATATGGTTATTCTATCTCTAATT-TTTTGAAGAACTACCATACTGGTTTCCATAGTGGCTGCACCATTTTATGTTCCCATCAGC-AATGCACAAGTGTTCCAAGGTATCTCCACAAATTTGCCAACACTTGTTATTTTCTATTTTG---TTATTATTATTATTATAGCCATCTTAGTAGGTATGAAGTAGTATCTCTTTGTAGTTTTGATTTGCATTTCCCTAATGATTAAAGATTTTGAGC----ATAATTTCATATGCTTATTGGTCACTTGTATATTTTCTTTGGAAAAATGTTTATTCAAGTTCTTTGTCCATTTTTTAATCTGGTGGTCTGGTTTTTCAATTG----T--TGAACTGTAGGAGCTATTTACAT---ATTCTGGCTATTTAACCCCTTATCAGATACAAGATTTGC-AAATATTTTCTTCCATTCCATGGGTTGCCTTTTCACTCTGTTGATAGTATCCTAACTATAGTTTT----CAGCTTTAATAATTTCAGAAATATAAATGATACAAGCTTCTT--AAATCATTTGAAAGT----TTATTTAAATGTTTAG-CTTGTTTAGTTTTGTAAATTTTGACTAATAAATTGCTAATTTTATTTTTTTCTTTCAGCCT-TCTGAAGATGCCAAAACAAAAAGCT-AAAATTAAAATTTTATAACTCCAAATTCACAAAATTAGGGAGGAAGTAGAGCAAGATGGTGGAATAAAAGGCTTCACAGATTATCCCCTCCACAAGAACACCAACTGAACAACTATCTACACAG--AAAAAAAAAA---ATCTTCATAAAAGCCAAAAATCAGGTAAGCACTCATAGTACCTGGTTTTAACTTCATATCATTGAAAGAGGCATTGAAGAGATAGAAAACACAGTCTTGAATCCCTGATGCCACCTCCCCAATCCTGGCAGTGGAGGTGTGGTACAGAGAGTGTTTCTGGGCACTAGGGGAGGGAGAGCACAGCAATTGTGAGGCACTGAACTC-AGTGCTGTCCTGGTAGAGCAGAACGGAAAACTAGACCAAACTGACACTCACCCACAAAGGGAGCATTTAAACCAGCCCTAGCCAGAAGAGAATCACTGATCCCAGTGGTCAGAACTTGAGTTCCCACAAACCTCGCCACTGCCGACCAGTACTCTGTGTCTCCAAATAAACCTGAAAGGCAGTCTAGGCCATAAAGACTGCAACTTGTAGATGAGTCCTAATGTTGAACTAGGCCCAGAGATAGTAAACTGGAGGGGCATGCAACATAGTGAGACACCAGCTGGGGCAGCCAAGCGAGTG-----CTGGCATCATCCATCCCCTAACCCCAGGCTGCACAGCTCACAGCTCCAAAAGAGATCCCCCTCTTTCTTCTGCTTGAGGAGAGGAGAGGGAAGAGTGGGGAGGACTTTGTCTCACATCTTGGATACCAGCTCAGCCACAGTAGGACAGGAGCGCTGGTCAGTCATGAGGTCCCCATTCCAGGCCCTAGCTCCCAGATGACATTTCTACATACACCCTGGGCCAGAAGGGAAACCACTTCCTTGAAGGAAAGGACCCGATCCTGGCAGCGTTTATCACCTG-TAACTAAAGAGCCCTTGGGCCCTGAATAACCAGCAGTGATACTCAGGTACTACATCAAGGGTCTTGGATGAGCCTCTGAGACTTGCTGGCTTCAGGTAACAGCATGAACATGAGGGGTAGAGCACCAAAGGAGTTCTTGGGGTCCCTGATTCCAGGACTTGATTCTTGGATGGCTTTTCTGGATCTGCCCTGGGCCAGCAGGGAGTCCACTGCCCTGAAGGGTGAGTCCCACACCAGGCAGCATTCACTACAAGCTGACTCAAGAGCCTTTGGTCCTTAAGAGAACATCAGCAGTAGTCTGACAGTATTCCTGGTAGCCTGTGGTGGTGGTGGCTACGGGGTGAGGCTCCTCCTTTGGAAAGGGGAAGGAAGAGTGGGAAGGACTGCATCTTGTGGTTTGAGTGCCAGCTCAGCCACAGTA-AATAAAACACCAGATAGACTTCTAAGGTTTTTTACTCTGGTCCCAAACTCCCAGATGGCATCACTGGACCCACAGGAACTTGGGGAACCTTGCTGCCCTGAAGGAAAGGAGACAGGACTGGCTAGCTTTGCCACTGGCTGATTGTAGAGCCCCAGCGCCTTGAGCAAATATAGGCAGTTTCCAGAAAGTAGTTATAGTGGTGGGCCTTGGGCAAGACCCAGTGCTGTGCTGGCTTCAAGCCTGACCCAACCCAGTCATAATGTTGGTGGCCACAGAGGTGCTTGTGTCCCTCCACCGATAGCTTTAGGAGGCTCAGAACAGAGAGAGAGAGA--------------GAGAGAGACTCTGTACGTTTGGGAGAAAGTAAGAGAAGAGATCAAGAGTCTCTGCCTGGTAATCCAGAGAATTCTCTCGATCTTGTCCAAGACCCATCAAGGGGGTACCTCTACAAGTCTGCAAGAACCATAGTGTTACTGGGCTTGGGGTACCCCCTAAAGCAGATACAGCTTAAATCACAACACTCAAGTCCTTTAAAATATCTGGAAAGCCTTCCCAAGAAGGATGGGTACAAGTAACCCCAGACAGTGAAGACTACAACAAATACTT-AACTCTTCAATGCCCAGACACCAAAGAACATCTACTAGCATCAATACCATCCAGGAAAACATGACCTCACCAAATGAACCAAATAAGGCACCAGAGACCAATCCTGGAGAAACGGAGATATGAGACCTTCCAGACAGAGAATTCAAAATAGCTGTGTTGAGGAAACTCAAAGAAATTCAAGTTAACACAGAGAAGACATTCAAAATTCTATCAGATAAATTTAATAAAGAGACTGAAATAACAAAAAAGAACCAAGCAGAAATTCTGGAGCTGAAAAATGCAATTGGCATACTGAAGAATGCACTAGAGTCCTTTAATAGCAGAACTGATCAAGCAGAAGAAAGAATTAGTGAGCTTGAAGACGGCCTATTTGAAAATATACAGAGGAGACAAAAGAAAAAAATAATAAAAAACAATGAAGCATGTTTACAGGACCTAGAAAATAGCTTCAGTAGGGCAAATCTATGAGTTATTGGCTTTAAAGAGGAGGTAGAGAAACAGATAGTGGTAGAAAGTTTATTCAAGGAGACAATAACGGAGAATTTCCCAAACCCAGAGAAAAATATCGATATCTACATATAAGAAACTCATACAACACCAAGCAGATTTAACCCAAAGAAGACTACCTCAAGGCATTTAATAGTCAAACTCCCAAAAGTCAAGGATAAAGAAAGAATTGTAAAAGAAGTAAGAGAAAAGAAACAAATAGAATAAAATGGAGTTCTAATATGTCTGGCATCAGACTTTTCCATGGAAACCACACAACCCAGGACAGAGTGACATGACATATTTAAAGTGCTGAAGAAAAAAAAAAAAAAAACTTTTACCCTAGAATAGTATATTTGGTTAAAATATTGTTCAAACACAAAGGAGAAATAAGACTTTCCCAGACAAACAAAAGCTGAGGAATTTCATCAACACCAGACCTGTCCTACAAGAAACGTTACAGGGAGTACTTAACTCAGAAAGAAAAGGACATTAATGAACAATAAGCAATCACCAGAAGGTACAAAACTCAGTGGTAATAGTAAGTACACAAAAAAGCACAGAATATTATAACACTGTAACTGTTATACTCTTATGCTAAGTAGAGAGACTAAACAATGAACCAATCAAAAATGGTAACTACAACAACTTTTCAAGACATAGTGCAATTATATATA-------------------------------------TATAT--------------------------------------------------------AAACAACTGGCTCAGCACCGTGGCTCATGCCTGTAATCCCAGTACTTTGGGAGGTCAAGGAGGGTGGATCACTTGAGGCCAGGAGTTCAAGACCAGCCTGGGCAACATGGCAAAACCCTGTCTCTCCAAAGAATTTTTAAAAATAAGCTGAGTGTGGTGGTGTGCAGCTGTGTGGTCTCAGCTACTGGGGAGGATGAGATGGCAGGATTGTTTGAGCCTTGGAGGCAGAGGTCGCAGTAAGTCAAGATCATGCCATTGCACTGTAGCCTGGGCAACAGAGCAAGACCCTGTCTCAAATAAATAAATAAATAGAAACAACAAAAAGTCAAAAAGTGGGGAGATGAAGTCAAGTCAAAGAGT # synteny group 0 a score=217.4 s hg18.7 27021403 565 + 158821424 ttttcttttctt--ttttttttttttttgaaatggagtctcactctgtcacccaggctggaatgcagtggcacgatctcagctcactgcaacctccgcctcccaggttcaagagattctcctgcctcagcctcccgagtagctgggattacagctgcacaccaccaggcctggctaatttttgtatttttagtagagccggggtttcgccatgttggccaggctggtctcaaactcctgacctcaagtgatccgcccacctcagcctcccaaagtgctgggattataggcatgagccaccacacccagcctattagttttctttttgcttgtctgcttatttatgcaaacactgttaaatttttatcaagctaaaataaatgggttataagatagtatttgtaaacctcattttaacctcaaaccaaaaaacatacaatggatacacaaaatataaaaagtaagagtccaaatcatatcaccagagaaaatcaccttcactaaaagaggaaggaaagaaagaaggaagagaagaccacaaaacaaccagactacaaatagcaaaatg s panTro2.7 27358324 565 + 160261443 ttttattttatt--ttattttattttttgaaatggagtctcactttgtcacccaggctggaatgcagtggcacgatctcagctcactgcaacctctgcctcccaggttcaagagattctcctgcctcagcctcccgagtagctgggattacagctgcacaccaccaggcctggctaatttttgtatttttagtagagccggggtttcgccatgttggccaggctggtctcaaactcctgacctcaagtgatccacccacctcagcctcccaaagtgctgggattataggcatgagccaccacacccagcctattagttttctttttgcttgtctgcttatttatgcaaacactgttaaatttttatcaacctaaaataaatgggttataagatagtatttgtaaacctcattttaacctcaaaccaaaaaacatacaatggatacacaaaatataaaaagtaagagtccaaatcatatcaccagagaaaatcaccttcactaaaagaggaaggaaagaaagaaggaagagaagaccacaaaacaaccagactacaaatagcaaaatg s rheMac2.3 97205484 45 - 196418989 -----TTTTATTAATTTCCTTTTTTTTTGAAATGGAGTCTCACTGTGTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- # synteny group 0 a score=-3919.6 s hg18.7 27021968 3965 + 158821424 atagcagtaagtccttacttattataataacattgaatgtaaatggactaaactgtcttatgaaaatacgtacactggctagatgaaaaaacaagacccatcgatctgttgcctacaaaaaaacaaaac-aacagcaacaaaaaacacttcacctgtaaaaacacacatagactgaaaataaagggatggaaaaagatattccatgacaatggaaactaaaaaagaacaggagttgctacacttatatcagacaaaatagattttaagaccaaaactctaagaagagacaaagaaagccactatacaatgagaaaggagtcaactcagcaaaataatataacaattttaaatatatatgcacccaacagtgaagcacccagatatataaagaaaatattactagtggtaaagagagagatacaccccaacacaataatagctagagacttcaacgccccactttcagcattga-tagatcttccagacaaaaaatcaacagacaccattagtcttactctgcactagagaccaagtggatctaatagatatttacagaacacttcatccaacagctgtagaatatgcattcgtttcctcagcacatggatcattctcaaggatagagtatatgttaggtcacaaaacaagtctgaaaacattcaaaaattgaaataatatcaagcatcttctctgaccacagtggaatataactagaaattaataacaagaggaattttggaaactatacaaatacatggaaattaaacaaagtgctcctgaatgaccagtgggtcaatgaagacattttaaaaaattgaaaaatttcttcaaacaaatgataatggaaaaacaaaatactaaaacctctgggatacagcaaaagcagtactgagagggaagtttatagctgtaagtgcccacatcaaaaaagggtaaaaacctcaaataaacaatctagtgatgcatcttaaaggaatagaaaagcaagagcaagccaaacccaaaattagtagaagaaaagaaatactaaggaccagaacagaaataaatgaaattgagatgaag---aaaaaaatacaaaagatcaataaaacaaaaagttggttttttaaaaagttaaacaaaattgacaaacctctagccaaactaaaagacagaaaatccaaataaataaaatcagaaatgaaaaaggagacatttacaactgatactgcagaaattcaaagtatcatcagtggttactacaagcaactatatgacaataaattggaaaatctagaagaaatggacaaatgtctatatacataaaaccaaccaagactgaatcagaaagaaattcaaaacctaaacagaccaagaacaagtaatgagatcgaagccataataaaaagtcttccagtaaagaaaagcccaggacctgatggctttactgctgaattctaccaaacatttaaagaagaactaataccaatccttctcgaattattccaaaaaatagaagaaaaagtaatacttccaaattcattctacaaggccaatattaccctgataccaaaaccagacaaagacacatcaaaaaaagaaaaaccactgatgaatattgatgc-aaaaatcctcaagaaaatactagcaaaccgaattcaacaatacgttagaaagatcattcatcatggctaagtggaatttatccctggatgcaagaatggttcaacacatgcaaatcaatcaatgtgatacatcttatcaacagaatgaaggataaaaaccacaggattatttcaattgatcctgaaaaagcatttgataaagttcaacgtcctgttatgataaaatccctcaaaaacctggggatagaaggaacatatctcaacataataaaagctacatatgacagacccacggtatcatactgaatggggaaaaactgaaagcctttcctctaagatctggaatatggcaaggatgcccactgtcaccactgttatttaacatagtactggaaatcctaactagagcaatcagacaagagaaagctataaagggcacccaaattagaaaggaagaagtcaaattatccttgtttgcagatgatataatcttataattggaaaaacctactaaagactccacaagaaaactattagaactgagaaacaaattcagtaaatttgcaggatacaaaatcaacacacaaaaatcagtagcatttctatatgccataggtgaacaatatgaaaaagaaatttaaaaagtaatcccacttatacacataaaattaaatacccggaaatttactt-gccaaagaagtgaaagatctctataatgaaaactacaaaatactgaaagaaattgaaggggacaccaaaaaatggaaaaatattccatgttcatggattggaagaaccaatattgttacaatgtccataccacccaaagcaatctacagattcaatgcaatccctatcaaaatactaatgatatccttccccagaatacaaaaaaattctaaaatttatatggaaccacaaaagtcccagaataaccaaagctatcctaagcaaaaggaacaaaactggaggaattacattacctgactttgaattatactacagagctatagtaaccaaaacagcatggtactggcacaaaaaaagacaatagctctatggaacagaatagagaacccagaaacagatccacacgcctagagtgaagtcatgtttgacaaaagtaccaagagcatacactggggaaaagacagtctcttcaatagatggcactgggaaaactggatatccatatgcagaagagtgaaactagacccctatctctcaccatataaaaaaatcaaataaaaagagtggattaaaagacttaaatctggctgggcaaggtggctcacacctataatcccagcactttgggaggccaaggcaggtgggtcactggaggtcaggagttcaagaccagcctgaccaacatgatgaaactctgtctctactaaaaatccaaaaaaattagctaggcatggtggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcagaggttgcggtgagccaagattgtgccactgcactccagcctgggtgacagagtgagtctctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaa-------------------------acttaaatctaagacctgaaactatgaaactgcttcaagtcaaaattggagaaaatctctagggcattggtctgggcaaaaatttcttgagtcccacaagtacaggcaaccaaaacaaacatggacaaatgagataacatcaagttaaaaagcttctgcacagcaaagaatacaatcaacaaaatgaagagacaacccacagaatgggagaaaatctttgcaaaatactcctctgataggggattaacaaccagaatatataaggaactcatacaactctataggaaaaaaaatctaacaacccaatcaaaaaatgggcaaaacatttgaacagacatatctcaaaagaagacatacaaatggcaaagaagcatatgaaatggtgctcaacattactgatcatcagagaaatgcaaatcaaaactacaatgagataccatctcacccctgttaaaatggcttatatacaaaagacaggcaataacaaatgtttgtgaggatgtggataaaagggaacccttgtattctgttggtaggaatgtaaattagtacaatcactagggagaatttggaggttcctcaaaaaactgatcattgagctaccataggatccagcaattccactgctgggtatatcccccaaagaaaggaaatcattatatcaaagagatatttccactcctatgtttgctgcagcactgtttacaatagctaggatttggaagcaacctaagtgtccatcaacagatgaatggataaagaaaatgtggtac s panTro2.7 27358889 3964 + 160261443 atagcagtaagtccttacttattataataacattgaatgtaaatggactaaactgtcttatgaaaatacgtgcactggctagatgaaaaaacaagacccatcgatctgttgcctacaaaaaaacaaaac-aacagcaacaaaaaacacttcacctgtaaaaacacacatagactgaaaataaagggatggaaaaagatattccatgacaatggaaactaaaaaagaacaggagttgctacacttatatcagacaaaatagattttaagaccaaaactctaagaagagacaaagaaagccactatacaatgagaaaggagtcaactcagcaaaataatataacaattttaaatatatatgcacccaacagtgaagcacccagatatataaagaaaatattactagtggtaaagagagagatacaccccaacacaataatagctagagacttcaacgccccactttcagcattgaatagatcttccagacaaaaaatcaacagacaccattagtcttactctgcactagagaccaagtggatctaatagatatttacagaacacttcatccaacagctgtagaatacacattcgtttcctcagcacatggatcattctcaaggatagagtatatgttaggtcacaaaacaagtctgaaaacattcaaaaattgaaataatatcaagcatcttctctgaccacagtggaatataactagaaattaataacaagaggaattttggaaactatacaaatacatggaaattaaacaatatgctcctgaatgaccagtgggtcaatgaagacattttaaaaaattgaaaaatttcttcaaacaaatgataatggaaaaacaaaatactaaaacctctgggatacagcaaaagcagtactgagagggaagtttatagctgtaagtgcccacatcaagaaagggcaaaaacctcaaataaacaatctagtgatgcatcttaaaggaacaaaaaagcaagagcaagccaaacccaaacttagtagaagaaaagaaatactaaggaccagaacagaaataaatgaaattgagatgaag---aaaaaaatacaaaagatcaataaaacaaaaagttggttttttaaaaagttaaacaaaattgacaaacctctagccaaactaaaagacagaaaatccaaataaataaaatcagaaatgaaaaaggagacatttacaactgatactgcagaaattcaaagtatcatcagtggttactacaagcaactatatgacaataaattggaaaatctagaagaaatggacaaatgtctatatacataaaaccaaccaagactgaatcagaaagaaattcaaaacctaaacagaccaagaacaagtaatgagatcgaagccataataaaaagtcttcccgtaaagaaaagcccaggacctgatggctttactgctgaattctaccaaacatttaaagaagaactaataccaatccttctcgaattattccaaaaaatagaagaaaaagtaatacttccaaattcattctacaaggccaatattaccctgataccaaaaccagacaaagacacatcaaaaaaagaaaaaacactgatgaatattgatgc-aaaaatcctcaagaaaatactagcaaaccgaattcaacaatacgttagaaagatcactcatcatggctaagtggaatttatccctggatgcaagaatggttcaacacatgcaaatcaatcaatgtgatacatcttatcaacagaatgaaggataaaaaccacagaattatttcaattgatcctgaaaaagcatttgataaagttcgacgtcctgttatgataaaatccctcaaaaacctggggatagaaggaacatatctcaacataataaaagctacatatgacagacccacggtattatactgaatggggaaaaactgaaagcctttcctctaagatctggaatatggcaaggatgcccactgtcaccactgttatttaacatagtactggaaatcctaactagagcaatcagacaagagaaagctataaagggcacccaaattagaaaggaagaagtcaaattatccttgtttgcagatgatataatcttatatttggaaaaacctactaaagactccacaagaaatctattagaactgagaaacaaattcagtaaattagcaggatacaaaatcaacacacaaaaatcagtagcatttctatatgccataggtgaacaatatgaaaaagaaatttaaaaagtaatcccacttatacacataaaattaaatacccggaaatttactt-gccaaagaagtgaaagatctctataatgaaaactacaaaatactgaaagaaattgaaggggacaccaaaaaatggaaaaatattccatgttcatggattggaagaaccaatattgttacaacatccataccacccaaagcaatctacagattcaatgcaatccctatcaaaatactaatgatatccttccccagaatacaaaaaaattctaaaatttatatggaaccacaaaagtcccagaaaaaccaaagctatcctaagcaaaaggaacaaaactggaggaattacattacctgactttgaattatactacagagctatagtaaccaaaacagcatggtactggcacaaaaaaagacaatagccctatggaacagaatagagaacccagaaacaaatccatatgcctagagtgaagtcatgtttgacaaaagtaccaagagcatacactggggaaaagacagtctcttcaatagatggcactgggaaaactggatattcatatgcagaagagtgaaactagacccctatctctcaccatataaaaaaatcagataaaaagagtggattaaaagacttaaatctggctgggcaaggtgactcacacctataatcccagcactttgggaggccaaggcaggtgggtcactggaggtcaggagttcaagaccagcctggccaacatggtgaaactctgtctctactaaaaatccaaaaaaattagctaggcatggtggtgggcacctgtagtcccagctacttgggaggctgaggcaggagaattgcttgaacccaggaggcaaaggttgcggtgagccaagattctgccactgcactccagcctgggtgacagagtgagtctctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaa---------------------------cttaaatctaagacctgaaactatgaaactgcttcaagtcaaaattggagaaaatctctagggcattggtctgagcaaaaatttcttgagtcccacaagtacaggcaaccaaaacaaacatggacaaatgagataacatcaagttaaaaagcttctgcacagcaaagaatacaatcaacaaaatgaagagacaacccacagaatgggagaaaatctttgcaaaatactcctctgataggggattaacaaccagaatatataaggaactcatacaactctataggaaaaaaaatctaacaacccaatcaaaaaatgggcaaaacatttgaacagacatatctcaaaagaagacatacaaatggcaaagaagcatatgaaatggtgctcaacattactgatcatcagagaaatgcaaatcaaaactacaatgagataccatctcacccctgttaaaatggcttatatacaaaagacaggcaataacaaatgtttgtgaggatgtggataaaagggaacccttgtattctgttggtaggaatgtaaattagtacaatcactagggagaatttggaggttcctcaaaaaactgatcattgagctaccataggatccagcaattccactgctgggtatatcccccaaagaaaggaaatcattatatcaaagagatatctgcactcctatgtttgctgcagcactgtttacaatagctaggatttggaagcaacctaagtgtccatcaacagatgaatggataaagaaaatgtggtac s rheMac2.3 97205951 3777 - 196418989 ATAGCAGTAAGTCC-------TTATAATAACATTGAAAGTAAATGGACTAAACTGTCTTACGAAAATACGTAGACTGGCTAGATGAAAAAACAAGACCCATCAATCTGTTGCCTACAAAAAAACAAAACAAACAAACAAAAAAAACACTTCACCTGTAAAAACACACATAGACTGAAAATAAAGGGATGGAAAAAGATATTCCATGATAATGGAAACTAAAAAAGAACAGGAGTTGCTACACTTATATCAGACAAAATAGATTTTAAGACCAAAACTTTAAGAAGAGACAAAGAAGGCCACTATACAATGAGAAAGGAGTCAACTCAGCAAGATAATATAACAATTTTAAATATATATGCACCCAACAGTGGAGCACCCAAATATATAAAGAAAATATTATTAGTGGTAAAGAGAGAGATACACCCCAACACAATAATAGCTAGAGACTTCAATGCCCCACTTTCAGTATTGAATAGATCTTCCAGACAAAAAATCAACAGACACCATCAGTCTTACTCTGCACTAGAGACCAAGTGAATCTAATAGATATTTATGAAACATTTCATCCAACAGCTGTAGAATACACATTCATTTCCTCAGCACATGGATCATTCTCAAGGATAGAGTATCTGTTAGGTCACAAAACAACTCTGAAAACATTCAAAAATTGAAATAATATCAAGCATCTTCTCTGACCACACTGGAATATAACTAGAAATTAATAACAAGAGGAATTCTGGAAACTATACAAATACATGGAAATTAAACAATATGCTCCTGAATGACCAGTGGGTCAATGAAGAAA-TTTAAAAAATTGGAAAATTTCTTCAAACAAATGGTAATGGAAAAACAAAATACTAAAACCTCTGGGATACAGCAAAAACAATACTGAGAGGGAAGTTTATAGCTATAAGTGCCCACATCAAAAAAGGGCAAAACCCTCAAATAAACAATCTAGTAATGCATCTT-AAGAAACAGAAAAGCAAGAGCAAACCAAACCCAAAATTAGTAGAAGAAAAGAAATACTAAGGACCAGAACAGAAATAAATGAAATTGAGATGAAGAAAAAAAAAATACAAAAGATCAATAAAACAAAAAGTTGGTTTTTTAAAAAGTTAAACAAAACTGACAAACCTCTAGCCAGACTAAAAGACAGAAGATTCAAATAAATAAAATCAAAAATGAAAAAGGACACATTTACAATTGATACTGCAGAAATTCAAAGTATCATCAGTGGTTACTATAAGCAACTAGATGACAATAAATTGGAAAATCTAGAAGAAATGGACAAATGTCTATATACATAAAACCAACCAAGACTGAATCAGAAAGAAATCCAAAACCTAAACAGACCAAGAACAAGTAATGAGAAAGAAATCACAATAAAAAGTCTTCCAGTAAAGAAAAGCCCAGGACCTGATGGCTTCACTACTGAATTCTACCACACATTTAAAGAAGAATTAATACCAATCCTTCTCAAATTATTCCAAAAAATAGAAGACAAAATAATACTTCCAAACACATTCTAGAAGGCCAGTATTACCTTGATACCAAAACCAGACAAAGACATATCAAAAAAAGAAAAACTACTGATGAATATTGATGCAAAAAATCCTCAAGAAAATACTAGCAAACAGAATTCAACAATATATTAGAAAGGTCATTGATCATGGCTAAGTGGAATTTATCCCTGGATGCAAGAATGGTTCAACACATGCAAATCAATCAATGTGATACATCATATCAACAGAATGAAGGATAAAAACCACATGATTATTTCAATTGATCCTGAAAAAGCATTTGATAAAGTTCAACATCCCTCTATGATAAAATCCCTCAAAAACCTGGGGATAGAAGGAACATATCTCAACATAATAAAAGCTATATATGACAGACCCACAGTATCATACTGAATAGGGAAAAACTGAAAGCCTTTCCTCTAAGATCTGGAATATGGCAAAGATGCCCACTGTCACCACTGCTATTTAACATAGTACTGGAAATCCTAACTAGAGCAATCAGACAAGAGAAAGATATAAAGGGCATTCAAATTAGAAAGGAAGAAGTCAAATTATCCTT-TTTGCAGATGATATAATCTTATATTTGGAAAAACCTCCTAAAGACTCCACAAGAAAACTATTAGAACTGAG----AAATTCAGTAAATTTGCAGGATACAAAATCAACATACAAAAATCAGCAGCATTTCTACATGCCATAGGTGAACAATGTGAAAAAGAAATTTAAAAAGTAATCCCACTTATACACATAAAAT----GACCCAGAAATTAACTTAGCCAAAGAAGTGAAAGATCTCTATAATGAAAACTACAAAATACTGAAAGAAATTGAAGGGGACACCAAAAAATGGAAAAATATTCCATGTTCATGGATTGGAAGAATCAATATTGTTACAATGTCCATACCATCCAAAGCAATCTACAGATTCAATGCAATCCCTATCAAAATACTAATGATATCCCTCCCCAGAATA-AAAAAAATTATAAAATTTATATGGAACCACAAAAGCCCCAGAATAGCCAAAGCTATCCTAAGCAAAAGGAACAAAACTGGAGGAATTACATTACCTGACTTTGAATTACCCTACAGAGCTATAGTAACCAAAACAGCATGCTACTGGCACAAAAAAAGACAATAGCCCAATGGAACAGAATAGAGAACCCAGAAACAAATTCACACGCCTAGAGTGAAGTCATGTTTGACAAAAGTACCAAGAACATACACTAAGGAAAAGACAGTCTCTTCAATAGATGGCACTGGGAAAACTGGATATCCATATGCAGAAGAATGAAACTAGACCCCTATCTCTCACCATACAAAAAAATCAAATAAAAAGAGTGGATTAAAATACTTAAATCTGGCCGGGCGAGGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGGTCACTGGAGGTCAAGAGTTCAAGACCAATCTGACCAATATGGTAAAACTCTGTCTCTACTAAAAATACAAAAAAATTAGCTAGGCATGGTGGTGGGCACCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCTTGAACCTCGCAGAAGGAGCTTGTGGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGTGACAGAGTGATTCTCCATCTCAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAATAAAAAGACTTAAATCTAAGACCTGAAACTATGAAACTGCTTCAAGTCAAAATTGGGGAAAATCTCTAGGACATTGGTCTGGGCAAAAATTTCTTGAGTCCTACAAGTACAGGCAACCAAAACAAACATGGACAAATGAGATAACATCAAGTTAAAAAGCTTCTGCACAGCAAAGAATACAATCAACAAAATGAAGAGACAACCCACAGAATGGGAGAAAATATTTTCAAAATACTCCTCT-ATAGGGGATTAATAGCCAGAATATATAAGGAGCTCATAAAACTCTATAGG--AAAAAATCTAATAATCCAATCAAAAAATGGGCAAAACATTTGAACAGACATATCTCAAAAGAAGACATACAAATGGCAAAGAAGCATATGAAATGGTGCTTAACATTACTGATCATCAGAGAAATGAAAATCAAAACTATGATGAGATACCATCTCACCCCTGTTAAAATGGCTTATATACAAAAAACAGGCAATAACAAATGCTTGTGAGGATGTGGATAAAAGGGAACCCTTGTATTCTGTTGGTGG------------------------------------------------------------------------------------------------------------GAATGTAAATTA----------------------------------------------GTACAATCACTAGG--------------------------------------------GAGAATTTGNNNN a score=-588.4 s hg18.7 27025933 940 + 158821424 ttggccgggaacagtggctcacacctgtaatcccagcactttgggaggctgaggcgggtggatcacgaggtcaggaattcgagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaattagtagccgggcatggtggctcatgcttgtaatcccagctactcgggaggctgagacaggagaatcgcttgaacccaggagggagaggttgtggtgagctgagatcacaccattgcactgcagcctgggcaacaaatgtgaaactctgtctcaaaaaaaaagaaagaaaaaagaaaatgtgatacttatacacaatgaagtactattcagccataaagaaggatgataaccagtcatttgcaacatggatggaactggagatcattatgttaaggaaaacaagccaggcacagaaagacaaacatcgtatgttctcact--tacttgtgggatctaaacatcaaaacaattgaactcatggacacagagagtagaaaaatagttgccagaggctgggaaagatagtgggggaatcgggggagatgaggatggttaatgagtgccaaa----------aaaatggaacaaatgaataagacctactatttgataggacaacagggtgactatagtctataataa-cttaaatgtatattttaaaataacgtatgaagtgtatcgtattgttt-gtaactcaaataacaaatgcttgaaggg-atggatTTTTTAAAAAAGAATCTCATCCACTGGGG--AAAAAATTTCACTAAATTAA-GTAA-GTATGAAATACATTTAAATAAGTATTTAAAGGGTGTTTTTATAAGTCTGTAGCATTTATGCTTCTGAAATTATTAAAACTTAAAACTACACTAAGACTTTTGGGACACTGTGTTTTAACTGTACAATCCCCGTCATGGATGTATGGGTACACTACATAACT s panTro2.7 27362853 816 + 160261443 ttggccgggaacagtggctcacacctgtaatcccagcactttgggaggccgaggcaggtggatcacgaggtcaggaattcgagaccagcctggtcaacatggtgaaaccccatctctactaaaaatacaaaaattagtagccgggcatggtggcgcatgcttgtaatcccagctacttgggaggctgagacaggagaatcgcttgaacccaggagggagaggttgtggtgagctgagatcacaccattgcactgcagcctgggcaacaaatgtgaaactctgtctcaaaaaaaaagaaagaaaaaagaaaatgtgatacttatacacaatgaagtactattcagccataaaaaaggatgataaccagtcatttgcaacatggatggaactggagatcattatgttaaggaaaacaagccaggcacagaaagacaaacattgtatgttctcact--tacttgtgggatctaaacatcaaaacaattgaactcatggacacagagagtagaaaaatggttgccagaggctgggaaagatagtgggggaatggggagagatgaggatggttaatgagtgccaaa----------aaaatggaacaaatgaataagacctactatttgataggacaacagggtgactatagtctataataaacttaaatgtatattttaaaataacgtatgaagtgtatcgtattgttttgtaactcaaataacaaatgcttgaaggggatggatTTTTTAAAAAAGAATCTCATCCACTGGGGGAAAAAAATTTCACTAAATTAAGGTAAGGTATGAAATACATTTAAATAAGTATTTAAA----------------------------------------------------------------------------------------------------------------------------------- s rheMac2.3 97209837 932 - 196418989 TTGGCTGGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGTGGATCACGAGGTCAGGAGTTCGAGACCAGCCTGGTCAACATGGTGAAATCCCATCTCTACTAAAAATACAAAAATTAGTAGCCGGGCGTGGTGGTGTATGCTTGTAATCCCAGCTACTCGGGAGGCTGAGACAGGAGAATCGCTTGAACCCATGAGGCAGAGGCTGTGGTGGGCTAAGATTGCACCATTGCACTACAGCCCGGGCAACAAATACAAAACTCCGTCTCAAAAAAA---AAAAAGAAAAGAAAATGTGGTACTTACACAAAATGAAGTACTATTCAGTCATAAAAAAGAATGATATCCAGTCATTTGCAACATGGATGGAACTGGAGATCATTACGTTAAGGAAAACAAGCCAGGCACAGAAAGACAAACATTATATGTTCTCACT--TATTTCTGGGATCTAAACATCAGAACAATTGAACTCATGGACACAGAGAGTAGAAAAATGGTTGCCAGAGGCTGGGAAAGATAGTGGGGGAATGGGGGGAGATGAGGATGGTAAATGAGTGCAAAA----------AAAATGGAACGAATGAATAAGACCTACTATTTGAC-GCACAACAGGGTGACTATAGTCAATAATAA-CTTAAATGTTCATTTTAAAATAACTTATGAAGTATAATGGATTGTTT-GTAACTCAAAGAACAAATGCTTGAAGGG-ATGTATTTTTTAAAAAAGAATCTCATCCACTGGGG-AAAAAAATTTCACAAAATTAA-ATAA-GTATGAAATACATTGAAA----TATTTAAAGGGTGTTTT-ATAAGTTTGTAGCATTTATGCTTCTGAAATTATTAAAACTTAAAACTATACTAAGACGTTTGGGGCACTGTGTTTTAACTGTACAATCCTGGTCATGGATGTATGGGTACACGACACAACT a score=209.0 s hg18.7 27026873 417 + 158821424 ACACAGttttgtttttttttttt-gagatggagtgttgctcagttgcccaggctgaagtgcagtggcgcaatcttggctcactgcaacttctgccttcagggttcaagcgattcttgtgcctcagtctcccgagtagctgggattacaggtatgagccaccaggcctggctacttttttgtatttttagtagagatgggttttcgctattgatatggtttggctgggtctccacccaaatctcatcttgaattgtagctcccataattctctcgtatagtgggacagacccagtgggagataactgaatcatgggggtggtttcccccatactgttctcgtggtagtaaataagtctcacaagagctgatggttttataagaggaaacccctttcacttggctgtcattctcttctct s panTro2.7 27363898 418 + 160261443 ACACAGttttttttttttttttttgagatggagtgttgctcagttgcccaggctggagtgcagtggcgcaatcttggctcactgcaacttctgccttcagggttcaagcgattcttgtgcctcagtctcccaagtagctgggattacaggtatgagccaccaggcctggctacttttttgtatttttagtagagatgggttttcgctattgatatggtttggctgggtctccacccaaatctcatcttgaattgtagctcccataattctctcgtatagtgggacagacccagtgggagataactgaatcatgggggtggtttcccccatactgttctcgtggtagtaaataagtctcacaagagctgatggttttataagaggaaacccctttcacttggctgtcattctcttctct s rheMac2.3 97210769 23 - 196418989 ACACAATTTTTTTTTTTTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=2970.8 s hg18.7 27027290 2723 + 158821424 tgtctgctgccatgtgagacgtgcctttcaccttctgccatgattgtgaggcctccccagccacatggaactgtgagtccattacacctctttcttttgtaaactgcccagtcccaggtatgtctttatcagcagtgttaaagcagactaatacagctatgttggccaggctggtttcaaactcttggcctcaagtgatctgcctgcctcagcctcccaaagtgctgagattacaaatgtgaaccactgtgcccagtcTACACAATTCTTTGGACTCT-TTTGGACATT-------TGAAATTTTTC--ACAATAAAATATT-CGAAAAAA------------GTCGGGTCAAGAGATATAATTTAATTATGAGAAATTAATAAAGATATAT-GAAAAAGGCTAAGCATAGAAGCAAAGTGATTATCAA-CATTATTATACCCA--------AGAC--AAATTCTTGCTACAGTTTAGTCCTCCTTTCAG-GAACTTTTTTCCAAGATCTATATTTATGACCAAGAAGTGTGTCTTATATCCAGGAAGCTtttttttctttctttctttcttttttGCCGTAAAGAATGACTGCAACACTTCCTAAGATGCTTGGGCATGTTAGATAGCTACTTTGTGAactcattcagctgttcgtcatgtattcagtaagtatttcctatgtgccaggca-----cagtacacagcagtggagatacgatcataaaacacacaatctttaaccaactg-actttatagtctagctgaagagagagaggagggcagaa----aaatagagtcttatgacaaagt--------gtaaagtgctat-atagcatgttc--------agcattatagcac----------------------------------------------------------------------------------------tattgtattacagcata----------------------------------------ttatg---------------------------------------gaaccac------aaaagaatagaatgcaatccaaccttgcaaatacaataatggcctccctgaataagtgagaggtgttagc-----ggtggggagaaggta---------tagaaattaaccaggtaaagaggggattgatgaatgtctcaattagagggaatcccataagcaaagtctcagaggtgcctggtaatatggtacatctgagaaagaacaaggaACTACTGGTGAAAGCAAGT---AGATGTCTGGAATAGGATGCTGATGCCCTGGTAAGAGAAGAAATTTAAGACATTCACAAAAGTAATCCATTCCCAGCTGAAAGTGGAAAAAAAAGCCAACGTATTTATTT--GATTATTTCAGTTA----------AAAATAAAGGTTTTTTAAATTTTATTTGGCTTCACTTTATG-AATGCTTTGAAACAAAATTTTAAAGTTTGAATTATCCAAATTCAGTATAATTGCTTTAACTTGCTATTGCATTCCGCAAATGGGAAAATAGGGTGAATGATGAAAAA---------CACTAAATACACAC--GGATGACATGGATACACAATGAGTGAGGTACATAAGGAAACTTTTTACcagtgatcctcaaacttcagtgagcacaagtggactactttaaaagccattttctatctttcatccttgagactctgacttaaaagatctgtggtggagtccaggaatctgaatttttaacaagaccacaaatgattc---tTTTAACTATTTGCAATagaaattttaaacctaaactaaattagagagaata--ctataacatcacccgcatactcctcactcaccttccataaataaaca---tatggccagtcttgtttcatctacatt-gccactcatttacccttcatc-ctaatttctttttaaaataatcccaaatatcttgacattttatc-cactaacacttcagtttgtatctctaaaa-agaatgaatatt-tttagc-attatcacaatacaataatcacacctaaagaCCCAAGGTGATCC-------------------------------------------------------------TAATGTAACTGGTC--C--AGTCTCAGAAAAACTGGA--------------------------CTTGAGAAAGAGGGTAACAAGTCAGTGTCTAAGTGGACTACTTGGGAAGACATAACTTAA-TTTAGTTCATCATAGATT--CAAAC---TCTTT--GTTCAAGAACAAGCAAGCTATTCAGTTATGTTTCTGAAACTGT--------TACC-TT-AAATATTC-AAAAA--------ATGTATTTATGGAAAGC-ATAAAATTAACATA----CTGAATTGAA-----TTAAAAAAA--AC-------------TTTTTCAG------GGTTA-----------TTGATC-------------------AAA--A--------------TTTTT-A-----------------------------------------AGGAAAA--------------A-G-------AAGTTG-TTT------TGTT-AAATA-CATTTTTACACCTTA---TCAAACCTCAA------------AGAGGAAAGAACAAATTG----------------------------------CTC-AATTTGCTTT-TC-CTCCAGAGTTACTTGGATTTCAC--------AGAGTTTAAAAATATTTTT--CTCAATGAACCTCAGAAAAGT--TTCTCA----------------GAGTAATGAAGAACACAAAATGTGCCCT-GATAACTTCCTCACAATTTAATTA----ACTCCAAATGCTA--AAGAATCTTGCTATTT---A-----TAATCATATCTATAGAATACA----------------------------------------------------------AT----------------TTGA----ATATCAAGGTTAGAGAAATC--TGATTCC-------------------------------------------------------------TTCAGTCAT-------------------ACTTCAGCTCC---TT----TCTTTTACC-TGCTT---TATCATCCCCAATCAGAACCAAT-ATTTATAAAGTTCAAGTCAG-TATTTCCTTGACATTTT---TATCTCCTTTCATCTGTTGCTT--------------TAAAAACAAAAGGGA-----ACAAA----ACTTAATACAGAAAAAT--AAAAGAAAGGAGAAGCAGCTGCAATGCTGAGCAGAAGAGGCAGGAACC------------------AGAACTGG------AGCAGTAGCTGGGTCGGCACCATGGCTGGG---ATCGCC-ACCATGGAGGAAGTGAAGTGCAAGATCCAGGTTCTGCAGCAGCAGGCAGAT----GATGCAGAGGAGAGAGCTGAGCGCCTCCAGTGAGAAGT---T---GAGGAAGAAAAGTGGGCCGGGAACAAG s panTro2.7 27364316 2725 + 160261443 tgtctgctgccatgtgagacgtgcctttcaccttctgccatgattgtgaggcctccccagccacatggaactgtgagtccattacacctctttcttttgtaaattgcccagtcccaggtatgtctttatcagcagtgttaaagcagactaatacagctatgttggccaggctggtttcaaactcttggcctcaagtgatctgcctgtctcagcctcccaaagtgctgagattacaaatgtgaaccactgtgcccagtcTACACAATTCTTTGGACTCT-TTTGGACATT-------TGAAATTTTTC--ACAATAAAATATT-CGAAAAAA------------GTCGGGTCAAGAGATATAATTTAATTATGAGAAATTAATAAAGATATAT-GAAAAAGGCTAAGCATAGAAGCAAAGTGATTATCAA-CATTATTATACCCA--------AGAC--AAATTCTTGCTACAGTTTAGTCCTCCTTTCAG-GAACTTTTTTCCAAGATCTATATTTATGACCAAGAAGTGTGTCTTATATCCAGGAAGCTtttttttctttctttctttcttttttGCCGTAAAGAATGACTGCAACACTTCCTAAGATGCTTGGGCATGTTAGATAGCTACTTTGTGAactcattcagctgttcgtcatgtattcagtaagtatttcctatgtgccaggca-----cagtacacagcagtggagatacgaccataaaacacacaatctttaaccaactg-actttatagtctagctgaagagagagaggagggcagaa----aaatagagtcttatgacaaagt--------gtaaagtgctat-atagcatgttc--------agcattatagcac----------------------------------------------------------------------------------------tattgtattacagcata----------------------------------------ttatg---------------------------------------gaaccac------aaaagaatagaatgcaatccaaccttgcaaatacaataatggcctccctgaataagtgagaggtgttagc-----ggtggggagaaggta---------tagaaattaaccaggtaaagaggggattgatgaatgtctcaattagagggaatcccataagcaaagtctcagaggtgcctggtaatatggtacatctgagaaagaacaaggaACTACTGGTGAAAGCAAGT---AGATGTCTGGAATAGGATGCTGATGCCCTGGTAAGAGAAGAAATTTAAGACATTCGCAAAAGTAATCCATTCCCAGCTGAAAGTGGAAAAAAA-GCCAACGTATTTATTT--GATTATTTCAGTTA----------AAAATAAAGGTTTTTAAAATTTTATTTGGCTTCACTTTATG-AATGCTTTGAAACAAAATTTTAAAGTTTGAATTATCCAAATTCAGTATAATTGCTTTAACTTGCTATTGCATTCTGCAAATGGGAAAATAGGGTGAATGATGAAAAC---------CACTAAATACACAC--GGATGACATGGATACACAATGAGTGAGGTACACAAGGAAACTTTTTACcagtgatcctcaaacttcagtgagcacaagtggactactttaaaagccattttctatctttcatccttgagactctgacttaaaagatctgtggtggagtccaggaatctgaatttttaacaagaccacaaatgattc---tTTTAACTATTTGCAATagaaattttaaacctaaactaaattagagagaata--ctataacatcacccacatactcctcactcaccttccataaataaaca---tatggccagtcttgtttcatctacatt-gccactcatttacccttcatc-ctaatttctttttaaaataatcccaaatatcttgacattttatc-cactaacacttcagtttgtatctctaaaa-agaatgaatatt-tttagc-attatcacaatacaataatcacacctaaagaCCCAAGGTGATCC-------------------------------------------------------------TAATGTAACTGGTC--C--AGTCTCAGAAAAACTGGA--------------------------CTTGAGAAAGAGGGTAACAAGTCAGTGTCTAAGTGGACTACTTGGGAAGACATAACTTAA-TTTAGTTCATCATAGATT--CAAAC---TCTTT--GTTCAAGAACAAGCAAGCTATTCAGTTATGTTTCTGAAACTGT--------TACC-TT-AAATATTC-AAAAA--------ATGTATTTATGGAAAGC-ATAAAATTAACATA----CTGAATTGAA-----TTTTAAAAA---C-------------TTTTTCAG------GGTTA-----------TTGATC-------------------AAA--A--------------TTTTT-A-----------------------------------------AGGAAAA--------------A-G-------AAGTTG-CTT------TGTT-AAATA-CATTTTTACACCTTA---TCAAACCTCAA------------AGAGGAAAGAACAAATTG----------------------------------CTC-AATTTGCTTT-TC-CTCCAGAGTTACTTGGATTTCAC--------AGAGTTTAAAAATATTTTT--CTCAATGAACCTCAGAAAAGT--TTCTCA----------------GAGTAATGAAGAACACAAAATGTGCCCT-GATAACTTCCTCACAATTTAATTA----ACTCCAAATGCTA--AAGAATCTTGCTATTT---A-----TAATTATATCTATAGAATACA----------------------------------------------------------AT----------------TTGA----ATATCAAGGTTAGAGAAATC--TGATTCC-------------------------------------------------------------TTCAGTCAT-------------------ACTTCAGCTCC---TT----TCTTTTACC-TGCTT---TATCATCCCCAATCAGAACCAAT-ATTTATAAAGTTCAAGTCAG-TATTTCCTTGACATTTT---TATCTCCTTTCATCTGTTGCTT--------------TAAAAACAAAAGGGA-----ACAAA----ACTTAATACAGAAAAAT--AAAAGAAAGGAGAAGCAGCTGCAATGCTGAGCAGAAGAGGCAGGAACC------------------AGAACTGG------AGCAGTAACTGGGTGGGCACCATGGCTGGG---ATCGCC-ACCATGGAGGAAGTGAAGTGCAAGATCCAGGTTCTGCAGCAGCAGGCAGATAGATGATGCAGAGGAGAGAGCTGAGCGCCTCCAGTGAGAAGT---T---GAGGAAGAAAAGTGGGCCGAGAACAGG s rheMac2.3 97211290 2692 - 196418989 TGTCTGCCGCCATGTGAGACATGCCTTTCACCTCCTGCCATGATTGTGAGGCCTCCCCAGTCACATGGAACTGTGAGTCCATTAAACCTCTTTCTTTTGTAAATTGCCCAGTCCCAGGTATGTCTTTATCAGCAGTGTTAAAACGGACTAATACAGCTATGTTGGCCAGGCTAGTTTCAAATTCTTGGCCTCAAGTGATCTGCCTGCCTCAGTCTCCAAAAGTGCTGAGATTACAAATGTGAACCACCGTGCCCAGTCTACACAACTCTTTTGACTCT-TTTGGACATT-------TGAAATTTTTC--ACAATAAAATATT-CAAAAAAA------------TTTGGGTCAAGAGATATAATTTAATTATGAGAAATTAATAAAGATACAT-GAAAAAGGCTAAGCATAGAAGCAAAGTGATTATCAG-TATTAATATACCCA--------AGAC--AAATTCTTGCTACAGTTTAGTCCTCCTTTCAG-GAACTTTTTTCCAAGATCTA----TATGACCAAGAAGTGTGTCTTATATCCAGGAAGCTTTTTTCTCTTTCTTTC-----TTTTTGCCTTAAAGAATGACTGTGACACTTCCTAAGATGCTTGGGCATGTTAGGTAGCT-TTTTGTGAACTCATTCAGCTGTTCGTCATGTATTCAGTAAATATTTCCTATGTGCCAGGCA-----CAGTACACAGCGGTGGAGATATGATCATAAAAAACACAATCCTTAACCAACTG-ACTTTATAGTCTAGCTGAGGAGAGAGAGGAGGGCAGAA----AAATAGAGTCTTATGATAAAGT--------GTAAAGTGCTAT-ATAGCATGTTC--------AGCATTGTAGCAC----------------------------------------------------------------------------------------CATCGTATTACAGCATA----------------------------------------TTATG---------------------------------------GAACCAC------AAAAGAATAGAATGCCATCCAACCTTACAAATACAATTATGGCCTCCCTGAATAAGTGAG-GGTGTTAGC-----GGTGGGGTGAAGGTA---------TAGAAATTAACCAGGTAAAGAGGGGATTGATGAATGTTTCAATTAGAGGGAATCCCATGGGTAAAGTCTCAGAGGTGCCTGGTAATATGGTACATCTGAGAAAGAACAAGGAACTACTGTTGAAAGCAAGT---AGATGTCTGGAATAGGATGCTGATGCCCTGGTAAGAGAAGAAATTTAAGACATTCACAAAAGTAATCCATTCCCAGCTGAAAGTGGAAAAAAA-GCCAACGTATTTATCT--GATTATTTCAGATAAATACAGCTTAAAATAAAGGTTTTTAAAATTTTATTTGGCTTCACTTTATG-AACCCTTTGAAACAAAATTTTAAAGTTTGAATTATCCAAATTCAGTATAATTGCTTTAATTTGCTATTGCATTCTGCAATTGGAAAAATAGGGTGAATGATGAAAAC---------CACGAAATATACACGTGGATGACATGAATACACAATGAGTGAGGTACACAAGGAAATTTTTTACCAGTGATCCTCAAACCTCAGTGAGCAAAAGTGGACTACTTTAAAAGCCATTTCCTATCTTTCATCCTTGAGACTCTGACTTAAGAGATCTGTGGTGGAGTTCAAGAATCTGAATTTTCAACAAGACCACAAGTGATTC---TTTTAACTATTTGCAATAGAAATTTTAAACCTAAACTAAATTAGAGAGAATA--CTATAATATTACCCACATACTCCTCATCCACCTTCCATAAATAAACA---TATGGCCAGTCTTGTTTCATCTACATT-GCCACTCGCTTACCCTTCATC-CTAATTTATTTTTAAAATAATCCCAAATATCTTGACATTTTATC-CACTAACACTTCAGTTTGTATCTATAAAA-AGAATGAATATT-TTTAGC-ATTATCACAATACAATAATCACACCTAAAGACCCAAAGTGATCC-------------------------------------------------------------TAATGTAACTGGTC--T--AGTCTCAGAAAAACTGGA--------------------------CTTGAGAAAGAGGGTAACAAGTCAGTGTCTAAGTGGACTACGTGGGAAGACA-----TAA-TTTAGTTCATCATAGATT--CAAAC---TCTTT--GTT------CAAGCAAGCTATTCAGTTATGTTTCTGAAACTGT--------TACC-TT-AAATATAC-AAAAA--------ATGTATTTATAGAGAGG-ATAAAATTAACACA----CTGAATTGAAT-TTTTTTTAAAAATAAC-------------TTTTTCAG------GGTTAAAAAAACTTCTTTAATA-------------------AAA--AACTTTAAAAAACCTTTTTT-A-----------------------------------------AGGAAAA--------------A-G-------AAGTTGCCTT------TGTT-AAATA-CATTTTTACACCTTA---TCAAACCTCAG------------AGAGGAAAGAACAACTTA----------------------------------CTC-AATTTGCTTT-TC-CTCCAGAGTTACTCGGATTTCAC--------AGAGTTCAAAAATATTTTT--CTCAATGAACCTCAGAAAAGT--TTCTCA----------------AAGTAATGAAGAACACAAAATGTGCCCT-GATAACTTCCTCACAAT----TTA----ACTCCAAATGCTA--AAGAATCTTGCTACTT---A-----TAATTATATCCACAGAATGCAC--------------------------------------------------------CAT----------------TTGA----AAATCAAGGTTAGAGAAATC--TGATTCC-------------------------------------------------------------TTCAGTCAT-------------------ACTTCAGTTCC---CT----T-TTTTATC-TGCTT---TATCATCCCCACTCAGAACCAAT-ATTTATAAAGTTCAAGTCAG-TATTTCCTTGACATTTT---TATCTCCTTTCATCTGTTGCTT--------------TAAAAACAAAAGGAA-----ACAAA----ACTTAATACAG-AAAAT--AAAAGAAAGGAGAAGCAGCTGCAATGCTGAGCAGAAGAGGCAGGAACC------------------AGAGTGCG------AGCAGTAGCTAGGTGGGCACCATGGCTGGG---ATCACC-ACCATGGAAGAAGTGAAGTGCAAGATC------------CAGCAGGCAGAT----GATGCAGAGGAGAGAGCTGAGCACCTCCAG------------------------------------------ a score=-2.8 s hg18.7 27030013 417 + 158821424 GAG---GCTGAGGTGGCCTCCTTGAATCGTAGGATCCAGCAGGTTTGAAGAGGAGCTGGACCATGCTCAGGAGCGCCTGACCACTGCCCTGCAAAAGCTGGAAGAAGAGGAGAAAGCTGCTGATGAGAGTGAAAGAGATATGAAGGTTATTG----AAAACCAGGCCTTgccgaggcccgggaatggc----------------gtgac--------------ccc-------cgg------------gaggcggagc---ttgcagtgag------------------ccg--agatcgtgccactgc--------------actccagcctgggcaa-caaagtgagactccgtctc---------------------aaaacaaacaaataaaaCCAGGCCTTAAAAGATGAAGAAAAGggcccagc-gcagtgg-ttcaaacct---gtaatcccagcactttg-----ggaggccaagccaggcgaatcacgag---gtcaagagtttgagactatcctggccaacac-ggtgaatccctg s panTro2.7 27367043 416 + 160261443 GAG---GCTGAGGTGGCCTCCTTGAATCGTAGGATCCAGCAGGTT-GAAGAGGAGCTGGACCATGCTCAGGAGCGCCTGACCACTGCCCTGCAAAAGCTGGAAGAAGAGGAAAAAGCTGCTGATGAGAGTGAAAGAGATATGAAGGTTATTG----AAAACGAGGCCTTgccgaggcccgggaatggc----------------gtgac--------------ccc-------cgg------------gaggcggagc---ttgcagtgag------------------ccg--agatcgcgccactgc--------------actccagcctgggcaa-caaagtgagactccgtctc---------------------aaaacaaacaaataaaaCCAGGCCTTAAAAGATGAAGAAAAGggcccagc-acagtgg-ttcaaacct---gtaatcccagcactttg-----ggaggccaagccaggcgaatcacgag---gtcaagagtttgagactatcctggccaacat-ggtgaatacctg s rheMac2.unknown 0 0 + 0 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ a score=-202.8 s hg18.7 27030430 158 + 158821424 tctctactaaaa-----atacaaaaaatt------agctgggcgtgatggcacacg--------cctgta-------gttcc------agctactcgggaggctgaggcaggagaatcgcttgaacccaggag-gcgg-----------------------aggttgcagtgagct------------------------------------------------------------ga---gatcgcgcc--------------------accgcactccagcctggc---------------gagacagtg s panTro2.7 27367459 147 + 160261443 tctctactaaaataaaaatacaaaaaatt------agctgggcgtggtggcacacg--------cctgta-------gttcc------agctactcgggaggctgaggcaggagaatcgctcgaacccaggag-gcgg-----------------------aggttgcagtgagct------------------------------------------------------------ga---gatcgcgcc--------------------accgcactcca------------------------------- s rheMac2.3 97214100 143 - 196418989 TCTCCACTAAAA-----ATACAAAAAATT------AGCTGGGTGTGGTGTCACACG-------CCCTGTA-------GTCCC------AACTACTTGGGAGGCTGAGGCAGGAAAATCGCTTGAACCCGGGAG-GCGG-----------------------AGGTTGCAGTGAGCT------------------------------------------------------------GA---GATCGCACC--------------------ACTGCACTCCA------------------------------- a score=2769.4 s hg18.7 27030588 1143 + 158821424 agactctgtcttaaacaaacaaacaaaaaGATGGAACTCCAGGAAATCCAACTCAAAGAAGCTAAGCATATTGCAGAAGAGGCAGATAGGAAATATGAAGAGGTGCCTCGTAAGTTGGTGATCATTGAAGGAGACTTGGAATGCACAGAGGAACGAGCTGAGCTGGCAGAGTCCCGCTGCCAAGAGACAGATGAGCAGATCA--GACTGATG--GACCAGAACCTGAAGTGTCT------------AAGTGATGCTG---AAGA--------AA-AATA--------CTCTCAAAAAGAAGACATATAT-------------GAGGAAGAGATCAAGATTCTC-ACTGACAAACTCAAGGAGGCAGAGACCCGTG--CTGAGTTTACTGA---GAGATTGGTAGC-CAAG-------CTGGAAAAGACAACT------------GATGAC-TTGGAATATAAACTGAAATGCAACAAAGAGGAGAACCTCTGTACACAAAGGATG-CTGTACCAGACTCTGC-----TTGAC-CTGAATGAGATGTAG-----------AACACCCCAG--TCCTACCCTGCTGCTGCTCCTCCCTTTGTCCCT---------------------------GACTCCACCTG--AGGCCGGCCTG-------CCTGAA-GCTGATCTT---T-AACTGAGGGCTGA--TCTTTAATTTGGGGGCTGCTT---------TCTACTTTCGCAGCCCCCTCCTTCCCTGTT--TCTTTTTTGCCAAA---------CTGT--CTCTGCCTCTT--CCTGGAGATTC----CAGCTGGGCTAAAGGCTGAGCACCTTTGGAAACAACAT--TTAAGGGAATGTGAGCACAATGCA-TAGTGTCTTTAAAAGCATG-TTATGATGTGCAAGTGTCTTTAAAAGCATGTTACGATGCGCACATTTTGTAATTACCTTTTTTGTTGTTTTGTAGCAACCATTTGCAAAACATTCCAAATAATTCCACAGCTCTGAAGCAGCAATCTAATCCCTTTCTCACTTTCGGAAGGTGACTTTTCAGCTAAATGCATATTGCCCTCTCCATAGAGGAGAGGAAAAAGTATAGGCCTGCCTTACTGAGAGCCAAACAGAGCCCAGGAAAAGACTCCACTATGAGAAACCTCGTTGCTCTGTACAAAATACCAGCCAAACCAGAAAGGTGATTCCAGGAGGAGTTAGCCAAACAACAACAAAAAAAAAACAAAAAAGATATTTTAAAGCTGAAAACCTggctgggtgccgtggctcacgcctgtattcccaccagtttg s panTro2.7 27367622 1113 + 160261443 agactccgtcttaaacaaacaaacaaaaaGATGGAACTCCAGGAAATCCAACTCAAAGAAGCTAAGCATATTGCAGAAGAGGCAGATAGGAAATATGAAGAGGTGCCTCGTAAGTTGGTGATCATTGAAGGAGACTTGGAATGCACAGAGGAACGAGCTGAGCTGGCAGAGTCCCGCTGCCAAGAGACAGATGAGCAGATCA--GACTGATG--GACCAGAACCTGAAGTGTCT------------AAGTGATGCTG---AAGA--------AA-AATA--------CTCTCAAAAAGAAGACATATAT-------------GAGGAAGAGATCAAGATTCTC-ACTGACAAACTCAAGGAGGCAGAGACCCGTG--CTGAGTTTACTGA---GAGATTGGTAGC-CAAG-------CTGGAAAAGACAACT------------GATGAC-TTGGAATATAAACTGAAATGCAACAAAGAGGAGAACCTCTGTACACAAAGGATG-CTGTACCAGACTCTGC-----TTGAC-CTGAATGAGATGTAG-----------AACACCCCAG--TCCTACCCTGCTGCTGCTCCTCCCTTTGTCTCT---------------------------GACTCCACCTG--AGGCCGGCCTG-------CCCGAA-GCTGATCTT---T-AACTGAGGGCTGA--TCTTTAATTTGGGGGCTGCTT---------TCTACTTTCGCAGCCCCCTCCTTCCCTGTT--TCTTTTTTGCCAAA---------CTGT--CTCTGCCTCTT--CCTGGAGATTC----CAGCTGGGCTAAAGCCTGAGCACCTTTGGAAACAACAT--TTAAGGGAATGTGAGCACAATGCA-TAGTGTCTTTAAAAGCATG-TTATGATGTGCA------------------------------CATTTTGTAATTACCTTTTTTGTTGTTTTGTAGCAACCATTTGCAAAACATTCCAAATAATTCCACAGCTCTGAAGCAGCAATCTAATCCCTTTCTCACTTTCAGAAGGTGACTTTTCAGCTAAATGCATATTGCCCTCTCCATAGAGGAGAGGAAAAAGTATAGGCCTGCCTTACTGAGAGCCAAACAGAGCCCAAGAAAAGACTCCACTATGAGAAACCTCGTTGCTCTGTACAAAATACCAGCCAAACCAGAAAGGTGAATCCAGGAGGAGTTAGCCAAACAACAACAACAAAAAAACAAAAAAGATATTTTAAAGCTGAAAACCTggctgggtgccgtggctcacgcctgtattcccaccagtttg s rheMac2.3 97214259 1111 - 196418989 AGACTCCATCTCAAACAAACAAAAAAAAAGATGAAACTCAAGGAAATACAACTCAAAGAAGCTAAGCATATTGCAGAAGAGGCAGATAGGAAGTATGAAGAGGTGGCTCGTAAGTTGGTGATCATTGAAGGAGACTTGGAATGCACAGACGAATGAGCTGAGCTGGCAGAGTCCCACTGACAAGAGACAGATGAGCAGATCA--GACTGATG--GACCAGAACCTGAAGTGTCT------------ACGTGATGCTG---AAGA--------AA-AGTA--------CTCTCAAAAAGAAGACATATAT-------------GAGGAAGAGATCAAGATTCTC-ACCGATGAACTCAAGGGGGCAGAGACCCCTG--CTGAGTTTACTGA---GAGACTGGTAGC-CAAG-------CTGGAAAAGGTAACT------------GATGACTTTGGAAGATAAACTGAAACGCAACAAAGAGGAGAACCTCTCTGCACAAAGGATG-CTGTACCAGACTGTGC-----TTGAC-CTGAATGAGATGTAG-----------AACACCCCAG--TCCTACCCTGCTGCTGCTCCTCCCTTTGTCCCT---------------------------GACTCGGCCTG--AGGCTGGCCTG-------CCTGGA-GCTGATCTT---T-AACTGAGGGCTGA--TCTTTAACTTAGGGGCTGCTT---------TCTACTTTCGTGGCCCCCTCCTCCCCTGTT--TCTTTTTTGCCAAA---------CTGT--CTCTGCGTCTT--CCTGGAGATTC----CAGCTGGGCTAAAGGCTGAGCACCTTTGGAAACAACAT--TTAAGGAAATGTGAGCACAATGCA-TAGTGTCTTTAAAAGCATG-TTGTGATGTACA------------------------------CATTTTGTGATTACC-TTTTTGTTGTTTTGTAGCAACCATTTGAAAAACATTCCAAATAATTCCACAGCTCTGAAGCAGCAATCTAACCCCTTTCTCACTTTCAGAAGGTGACTTTTCAGCTTAATGCATATTGCCCTCTCCGTAGAGGAGAGGAAAAAGTATAGGCCTGCCTTACTGAGAGCCAAACAGAGCCCAGGAAAAGACTCCACTATGAGAAACCTCGTTGCTCTGTACAAAGTACCAGTCAAACCAGAAAGATGATTCCAGGAGGAGTTAGCCAAACAACAACAAC--AACAACAAAAAAGATATCTTAAAGCTGAAAACCCAGCTGGGCACCGTGGCTCACGCCTGTAATCCCACCAGTTTG a score=3239.8 s hg18.7 27031745 2411 + 158821424 gtggatcacgaggtcaggagtttgagaccagccggaccaacgtggtaaaacctcgtctctactaaaaatacaaaaattagccaggcgtggtggcgtgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaagtttcagtgagcctagatcatg-tactgtactccagcctgggcgacaga------gtgagactctgt----------------------ctcaaaaaaaacaaagaaaGATATCTTTGGACAACG------------TTATTTCAA-----ATTTTTTTCATTAGAAGTGACCAAA-TTAAGATGGT---AAGACCTCTGAGACCAAATTTTTGTCCT----------------------CCCAACTGCTTACAGAATGGATCACGTGCCCCTTAGGTTGAGGTGACTACTTAATTGCTTTCCTACCTTCTTGAAAGAAAGA----AAGATTATGTTTTCGCCACTGATTTAGCCATGTGAAACTCATCTCATTAGCCTTTTCTGGGTTTGAAGTTGCTATCTCTAAAAGTGCCATCTCATTGTGCTTTGTATCAGTCAGTGCTGGAGAAACCTTGAATACCttatatacaaaa-tttttttaaattttgtattattttGAAACTTTGCTTCCTTGGGTTTGTGGCACCCTGGCCACCCCCATCTGGCTGTGACAGCCTCTGCAGTCCGTGGGCTGGCAGTTTGCTGATCTTTTAAAGTTTCTTTCCCTACCCAGTCCCCATTTTCTGGTAAGGTTTCTATGAGGTCTGTTAGGTGTACATCCTGCAGCTTATTGGCTTGAAATGTACTCTCCTTTGATGTGGTCTCTTTGGGGCCGATTGGGAGAAAGAGAAATCAATAGTGCAACTGTTTTGATACTGAATATTGATAACTGTCTTTCTGATAT-AAAAAACCAGTCCCTCCAAAACAACACCTGAGTTTATAGCTGAATATCAG---AAGCAATATTAAGTTTTCTTTCTTAACCACGCAGATCAGAA-------AA-TCTTTTGCAACAT---TAACAT---TTTAAAA-----TATCAggctgagcacagaggctcttgcctgtaatcccagcactttgggaggccaagatgagagcatcacttaagcccaggagctcaagaccagcctgggcaacatagggagaccccatttctacaaaaaataaaaaattagctaggtgtggtggcatgcaactatggtcctagctacttagcacgctgagatgggaggatcgcttgagacaaggaaattgaggctacagtgagccataa--tgatgccactgcactccagccttggcaacagagtgtg--actctactcatctc------aaaaaacaaaacaaaacaaaaaaaa-----CTTACATTTCACTGTCAATCCC-----TAAAATCA-CATTTGTGTAACACTG-GTGTAAATTATATATTTGCGTTTTTCAGCTATATTCCATTTTTTAAAGTA----CAGT----GATGATCTGT----GAT----AG-----C----TTACAAGCTAT----TTCT---TATTTATCAACAGTAT-GAAACCATG--AATCC------------ATATCAAAACTATGACATAAAATCCTACATATGTG---AT--T-----------ATTAA-CCT-----TAGAATGC-CTAAGATGAAACTG-TTCCTTGATA---------------------------------------------------------CTGTCA------------------------TT--------AAAAG---AAGCATTTAAT--AAAGTACTAAACATC-----ACATGTTTAA---GGTATTTAA-TTTCTTTTTT-AAACTCTTT-ACC-CTTTGCT-----GAG----G---TTTTTTA-TTTGACATGTGTCC-AAGGTAA-AAAGACAAATC--------TACTCTTTT----GCT-CTTTGATAAGGTGTCAGAGCTT-ACT--TAAAGGTTT----------AGGAATAGAGT-------------TGTTG-AACTA---AT---TTTTTT--G----T--ACTGCA----AGTT--ATA-TATGAGAATTGGTAGCAGTCTGTT-------------------------------------GAAAGAAGTTTACCTGTGGTTAATAGCA-----CTTATCTCACTTCTATCTATCATGCCATC-AATTTC-TTTATTACAAGAGTTTACCTTTGGGCAGCTCATACA-----CCAGCTGTCAATCTGTCCTCAC--CCCGAGACTTTGCAGTAAACC---AAGCTCAGGTGTGTTGAGGTTTCACCAT-GCTAG------------------TTG----TTTTCCTTCTTTCTC----CAACT--AGAACA----GGTGTAGTC-A-AAATGCA----A-GCCTCTGGCACTCCAGATGTG-CCCCATCACAAGACAGAGCCAGAACTTCTT-C--ATTCCTGCCTCCTAGA--------TCACA-ACTTCGTATCTGGAGA---TTTTCTAGATGTTGCTTCTTGTCTTAA-TTTTACCTTTCCTGCC----------------CCttcactg-a---------------agca-ttttaagtgg-tagcttta-----------------------------------aa----------aaga----ctaaaa-aac-----------------------tccaatgtccatcaataaagga--------c----------------------------------------------------------------------------------------------------------------------------------------------------------------------tggtccaat-aaagta---ta-ct---ccacgaaacgaattactatacc----------ttgtaaaaaa---tgagaaaggaaa------------------------------aaa-----tga----------------------------aaatgctctctaagtagtaat-atggaaaga-tttcc--------------------------------------------------------------------------------------------------------------------aaga---tacaataag-ttaaaaaagtaagatgcagaatagtattaccttttgtatttt-----aaaaa---aaa-tcataattgcttc-tatattcataaagaa--acttg s panTro2.7 27368749 2409 + 160261443 gtggatcacgaggtcaggagtttgagaccagcctgaccaacgtggtaaaaccccgtctctactaaaaatacaaaaattagccaggcgtggtggcgtgtgcctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccaggaggcggaagtttcagtgagcctagatcatg-tactgtactccagcctgggcgacaga------gcgagactctgt----------------------ctcaaaaaaaacaaagaaaGATATCTTTGGACAACG------------TTATTTCAA-----ATTTTTTTCATTAGAAGTGACCAAA-TTAAGATGGT---AAGACCTCTGAGACCAAATTTTTGTCCT----------------------CCCAACTGCTTACAGAATGGATCACGTGCCCCTTAGGTTGAGGTGACTACTTAATTGCTTTCCTACCTTCTTGAAAGAAAGA----AAGATTATGTTTTTGCCACTGATTTAGCCATGTGAAACTCATCTCATTAGCCTTTTCTGGGTTTGAAGCTGCTATCTCTAAAAGTGCCATCTCATTGTGCTTTGTATCAGTCAGTGCTGGAGAAACCTTGAATACCttatatacaaaa-tttttttaaattttgtattattttGAAACTTTGCTTCCTTGGGTTTGTGGCACCCTGGCCACCCCCATCTGGCTGTGACAGCCTCTGCAGTCTGTGGGCTGGCAGTTTGCTGATCTTTTAAAGTTTCTTCCCCTACCCAGTCCCCATTTTCTGGTAAGGTTTCTATGAGGTCTGTTAGGTGTACATCCTGCAGCTTATTGGCTTAAAATGTACTCTCCTTTGATGTGGTCTCTTTGGGGCCGATTGGGAGAAAGAGAAATCAATAGTGCAACTGTTTTGATACTGAATATTGATAACTGTCTTTCTGATAT-AAAAAACCAGTCCCTCCAAAACAACACTTGAGTTTATAGCTGAATATCAG---AAGCAATATTAAGTTTTCTTTCTTAACCACGCAGATCAGAA-------AA-TCCTTTGCAACAT---TAACAT---TTTAAAA-----TATCAggctgagcacagaggctcttgcctgtaatcccagcactttgggaggccaagatgagagcatcgtttaagcccaggagctcaagaccagcctgggcaacatagggagaccccatttctacaaaaaataaaaaattagctaggtgtggtggcatgcaactatggtcctagctacttagcacgctgagatgggaggatcgcttgagccaaggaaattgaggctacagtgagccataa--tgatgccactgcactccagccttggcaacagagtgtg--actctactcatctc------aaaaaacaaaacaaaacaaaaaaaa-----CTTACATTTCACTGTCAATCCC-----TAAAATCA-CATTTGTGTAACACTG-GTGTAAATTATATATTTGCGTTTTTCAGCTATATTCCATTTTTTAAAGTA----CAGT----GATGATCTGT----GAT----AG-----C----TTACAAGCTAT----TTCT---TATTTATCAACAGTAT-GAAACCATG--AATCC------------ATATCAAAACTATGACATAAAATCCTACATGTGTG---AT--T-----------ATTAA-CCT-----TAGAATGC-CTAAGATGAAACTG-TTCCTTGATA---------------------------------------------------------CTGTCA------------------------TT--------AAAAG---CAGCATTTAAT--AAAGTACTAAACATC-----ACATGTTTAA---GGTATTTAA-TTTCTTTTTT-AAACTCTTT-ACC-CTTTGCT-----GAG----G---TTTTTTA-TTTGACATGTGTCC-AAGGTAA-AAAGACAAATC--------TACTCTTTT----GCT-CTTTGATAAGGTGTCAGAGCTT-ACT--TAAAGGTTT----------AGGAATAGAGT-------------TGTTG-AACTA---AT---TTTTTT--C----T--ACTGCA----AGTT--ATA-TATGAGAATTGGTAGCAGTCTGTT-------------------------------------GAAAGAAGTTTATCTGTGGTTAATAGCA-----CTTATCTCACTTCTATCTATCATGCCATC-AATTTC-TTTATTACAAGAGTTTACCTTTGGGCAGTTCATACA-----CCAGCTGTCAATCTGTCCTCAC--CCCGAGACTTTGCAGTAAACC---AAGCTCAGGTGTGTTGAGGTTTCACCAT-GCTAG------------------TTG----TTTTCCTTCTTTCTC----CAACT--AGAACA----GGTGTAGTC-A-AAATGCA----A-GCCTCTGGCACTCCAGATGTG-CCCCATCACAAGACAGAGCCAGAACTTCTT-C--ATTCCTGCCTCCTAGA--------TCACA-ACTTCATATCTGGAGA---TTTTCTAGATGTGGCTTCTTGTCTTAA-TTTTACCTTTCCTGCC----------------CCttcactg-a---------------agca-ttttaagtgg-tagcttta-----------------------------------aa----------aaga----ctaaaa-aac-----------------------tccaatgtccatcaataaagga--------c----------------------------------------------------------------------------------------------------------------------------------------------------------------------tggtccaat-aaagta---ta-ct---ccacaaaacgaattactatacc----------ttgtaaaaaa---tgagaaaggaaa------------------------------aaa-----tga----------------------------aaatgctctctaagtagtaat-atggaaaga-tttcc--------------------------------------------------------------------------------------------------------------------aaga---tacaataag-ttaaaaaagtaagatgcagaatagtattaccttttgtattta-----aaaaa---aaa-tcataattgcttc-tatattcatgaagaa--act-- s rheMac2.3 97215384 2368 - 196418989 GTGGATCATGAGGTCAGGAGTTTGAGACCAGCCTGACCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCGTGGTGGCATGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGTAGTGAGCCCAGATCATGTTACTGCACTCCAGCCTGGGCGACACA------GCAAGACTCTGT----------------------CTCAAAAAA---AGAGAAAGATATCTTTGGACAACG------------TTATTTCAA---TTTTTTTTTTCATTAGAAGTGACCAAA------------------------------------------------------------------------CTTATAGAATGGATCATGTGCCCCTTAAGTTGAGGTGACCACTTAATTGCTTTCCTACCTCCTTGAAAGAAAGAAAGGAAGATTATGTTTTTGACACTGATTCAGCCATGTGAAACTCACCTCATTAGTCTTTTCTGGGTTTGAAGCTGCTGTCTCTAAAAGTGCCATCTCATTGTGCTTTGTATCAGTCAGTGCTGGAGAAATCTTGAATACCTTATATACAAAACTTTTTTTAAATTTTGTATTATTTTGAAACTTTGCTTCCTTGGGTTTGTGGCACCCTGGCCACCCCCTTCTGGCTGTGACAGCCTCTACAGTCCGTGGGCTGGCAGTTTGCTGATCTTTTAAAGCTTCTTTCCCTACCCAGTCCCCATTTTCTGGTAAGGTTTCTATGAGATCTGCTAGGTGTACATTCTGCAGCTTATTGGCCTAAAATGCACTCTCTTTTGATGTGGCCTCTTTGGGGCTGATTGGGAGAAAGAGAAATCAATAGTGCAACTGTTTTGATACTGAATATTGATAAGTGTCTTTCTGAAATAAAAAAACCAGTCCCTCCAAAACAACCCTTGAGTTTATAGCTGAATATCAG---AAGCGATATTAAGTTTTCTTTCTTAACCAGGCAGATCAGAA-------AA-TCCTTTGCAACGT---TAACAT---TTTGAAA-----TATCAGGCTGAGCATGGAGGCTCTCGCCTGTAATCTCAGCACTTTGGGAGGCCAAGATGAGAGGATCGCTTAAGCCCCGGGGCTCAAGACCAGCCTGGGCAACATAGGGAGACTCCATTTCTATAAAAAATTCAAAATTAGCTAGGTGTGTTGGCATGTAGCTATGGTCCTAGCTACTTAGCAGGCTGAGATGGGAGGATCGCTTGAGCCAAGGAAATTGACGCTACAGTGAGCCACGA--TGATGCCACTGCACTCCAGCCTTGGCAACAGAGTGTG--ACTCTTCTCATCTCA-----AAAAAACAAAACAAAACAAAAAAAT-----CTTACATTTCACTGTCAATCCC-----TAAAATCA-CATTTGTGTAACACTG-TTATAAATTATATATTTGCGTTTTTCAGCTATATTCCATTTTTTAAAGTA----CAGT----GATGATCTAT----GAT----AG-----C----TTACAAGCTAT----TTCT---TATTTATCAACTGTAT-AAAACCATG--AATCC------------ATATCAAAACTATGACATAAAATCCCACATATGTG---AT--T-----------ATTAA-CCT-----CAGAAAGC-CTAAGATTAAACTG-TTCCTTGACA---------------------------------------------------------CTGTCA------------------------TC--------AAAAG---AAGCATTTAAT--AAAGTACTAAATATC-----ATAGGTTTAA---GGTATTTCA-TTTCTTTTTT-AAACACTTT-ACC-CTTTGCT-----GAG----G---TTTTTTA-TTTGACATGTGTCC-AAGGTAC-AAAGACAAATC--------TACTCTTTT----GCT-CTTTGATAAGGTGTCAGAGCTT-ACT--TAAAGGTTT----------AGGAATAGAGC-------------TGTTG-AACTA---AT---TTTTTT--C----T--ACTGCA----AGTT--ATA-TTTGAGAATTGGTAGCAGTCTGTT-------------------------------------GAAAGAAGTTTACCTGTGGATAATAGCG-----CTTATCTCACTTCTATCTATCATGCCATC-AATTTC-TTTATTACAACAGTTTACCTTTGGGCAGTTCATATA-----CCAGCTGTCAATCCGTCCTCAC--CCCGAGACTTTGCAGTAAACC---AAGCTCAGGTGTGTTGAGGTTTCACCAC-GCTAG------------------TTG----TTTTCCTTCTTTCTC----CAACT--AGAACA----GGTGTAGTC-A-AAATGCA----A-GCCTCTGGCACTCCAGATGTG-CCCCATCACAAGGCAGAGCCGGAACCTTTT-C--ATTCCTGCCTCCTAGA--------TCACA-ACTTCGTATCTGGAGA---TTTTCTAGATGTCGCTTCTTGTCTTAG-TTTTACCTTTCCTGCC----------------CCTTTACTG-A---------------AGCA-TTTTAAGTGG-TAGCTTTA-----------------------------------AA----------AAAA----CTAAAA-AAC-----------------------TCCAATGTCCATCAATAAACGA--------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCCAAT-ACAGTA---TA-CT---CCACAAAATGAATTACTATATC----------TCGTAAAAAA---CAAGAAAGGAAA------------------------------AAA-----TGA----------------------------AAATGCTCTCTAAGTAGTAAT-ATGGAAAGA-TTTCC--------------------------------------------------------------------------------------------------------------------AAGA---TACAGTAAG-TTAAAAAAGTAAGATGCAGAATAGTATTACCTTTTGTGTTT-------AAAA---AAA-TCATAATTGCTTC-TATATTCATAAAGAA--ACT-- a score=-137.0 s hg18.7 27034156 111 + 158821424 ccaggagcagtggctcatgcctgtaa-------------------tcccagcactttgggaggc----------cgaggcggacagat---cacgaggttagcagatcgagaccatcctggctaa-cacggtgaaatccc--gtct s panTro2.7 27371160 107 + 160261443 ccaggcacagtggctcatgcctgtaa-------------------tcccagcactttgggaggc----------cgaggcgggcagat---cacgaggttagcagatcgagaccatcctggctaa-cacggtgaaatccc------ s rheMac2.3 97217754 106 - 196418989 CCGGGTGCGGTGGCTCACGCCTGTAA-------------------TCCCAGCACTTTGGGAGGC----------CAAGGTGGGTGGAT---CACGAGGTCAGCAGATCGAGA-CATCCTGGCTGA-CACGGTGAAACCCC------ a score=2009.2 s hg18.7 27034267 3234 + 158821424 ctactaaaaatacaaaaaattagacagttgtggtggcg------ggcgcctatagtcccagctactcgagaggttgtggcaggagaatcgcttgaacccgagaggcg------gagcttgcagtgagccgagatcgcgccactgc--------actccagcctgagcgacagagcaagac-----------tcagtcttgaaaaaaaaaaagaaactctgaaaagatagaatacaaactaagaatactgattattggggtt-ggggtgtttaggaactaagcatgat----gaa----aggagtggaaaggaGAATTTTCATG--ACATGCCTTCTTATTCTT-----TTTATTTTTG--------AACTATATTGCCTATTCAAAATAT-T------------------CAATTTA-----------AAAAGAAAGAGATAATAGCTTCATTCAGTGC-----------------AAGGAGGCTA----------AAAGAAAGAAGAACTACACTAAGTAAGAAAGTCTCATTC--TTACTCAGGCTATTGGCACTATAGTTTGGGGGAAAGAATA----AAT--TATCAGGAAACTGAA------------------AAAT--AAAATTTAG-------------------------AAAAT--CACCAGTAAAAGCAGCTAGGACTGG---TTCTGGTTGAAGGACAGGCTAAAAGAC---AAA-AACATTAGCTACCAATCTTATG---GCTTTGCTGATT--CATCTGTGTTTTAACAGTGAGCAAAAAGTAT--TTTGAAGACAAAT-AACATTACAGCAGGATCAAATGC----TCTCTCCTTAAGCAT-------------TTTCTTCAGT---------------TTTCTAAAAGATATCCCATGTGCTGCTT----CTCTCACATCCCAGATTACAAAGGCagcatggtgaagaggcaagcactggagcc-ctggtgcaatgctga------ctagcctcagttccagctttaaca----cttaggtgctgtatggcctgtacacattatttaaccacatcgtgctttgtttcttcacctgtacagtggcgataagaagagtatctacctcataaagtcactgtgaggattaatc---aagttaatacac---caaaacatgtagaacagcgcctggctcacagtaagaa--ctctgta-aatgtttgctcttTTACTTGCTCTTCA----ACTGTTT--TGCTGTT---------------TGTCTTTC--TT-TAAAAGTGCAGCCTCCAA--GGCCTAAA-----ACTTACCCT--TTCCACTTCCCATTAACCC------TTGTTCTTT--------TTTTT-TCTC--CATTTTCCTTCTAC---TTTTCTTTTTTAAAGAGG------------------------------------G-----ATACAA-------TCGGTCA-------------CT----------------------AAAATACTCCCACAGCATTTTTGAGACAAGATCATCTCAAAGAAAAATATTCATAAAGGAAATAGAAA---------------GTG--TGGTGTTT-----GCCAGAAAAATTCAGAATTTAAAGCATTGGCATAAAGATAATTCCTTACATTTCTATATCACTCTATATAGTGatataggtt-atctcatttgatccttacaacaaccttttg--agACCATTAGGG---------------CAGTAAAAGAAT-ACAA-GGCAAATGA-GATTAAAA--GGGTTGCCTG-----AGGCTAAATTG---------------GTGACAATATCTGACCAGCTCAGTTCGACAACAATTTATTGAACACCTGCCACAGCTTGGCCACTTGTGCTGACCTCCAAATTCT-A-AATGCTCTCTG--------CTACAAAGAGTCTACATGGTATAAAACACCTCTCAAGAGCTTCACTCAACTTGATAATCATGCTACCT-AAA-----AGC----CACTATAggccgggcacagtggctcatgcctgtaatcccagcattttgggaggccgaggcaggcagatcatgaggtcaggagtttgagacagcctgactaatacaagtaaaaccccgtctctactaaaaatacaaaatttagccgggtgtggtggcacaggcctgtaatcccagctactcaggaggct-gagacaggagaattgctagaaccagggaggaggaggttgcagtgagccgagatagtgccactgcactccagcctgggtgacagggtgagactccgtctcaaaaaacaagaaaagaaaagagaagagaagagaaaagaaaagaaaagaaaagaaaaaaaagagaaaaAGCTGCTAT-AGTATCAGATAGCAGAAAGGAACAG-G----GATTCCCTGGCAAAAGTATATTGGgctgcatgatcttgggcaaattacttaactactctatgccagttttctc-ttcttttttgttaaattctttttcttttatagagataggatctcctatgttgcccaggctgttttcaaactcctgggctcaagtgatccctctgcctcagcctcccaaaatgctgggattacaagcatgagccaccTCAACCACCAGctaagccagttttctcatacctaaatatatgtattatact-taccacca---ggtggttgt-aagggttaaatgagagaatgaatataaa--ATCTG-TTGTAAACTGT---------AACATCCCATC--GGGTATTAGTT---TTTTTGGTG-----TTAATCTGATTTAGCAGTGGAATGCAAGATGGAACCTAGGCGGGGGGCGGAGGGAAAAAAAGTCTGATAGAAAAACATCTTTAGGTACTCAGCCCTTAAAA-GACCTCCC--AGGGAGAGTAGCAACATTACAAAAA-CTCACACTGTTTCCCCTGTGGAGGGTACCCA-CTGAGCTAACAGAGGTAGGCCTCATGGGTCAGCCCCA-TTCTACCAAATGTA--TTCT---TTCCCATTTGCTCCAGC----TGGTGGTAACAGGTACAGAG--------------GGAGCAAA------CCAGACAGCTGGTGCCACATGAAACAGAAAGATC----TGTGCTTCGCCGTAAGG---------------------------------------------------------------------------------------------AA----------AAAAAAAAACTGTGGGAAA--CAGTGCAAGAACAAAAATAAGCAGGCAAG-T-GTTTGGGGCATTTCAGCTG--------GTAAGT----------GAG----------------A--------GAGAG---AAGCAGCCCCAAGACAGATGCAGTCCACG-CCCTCCATCTGTAACCAGAGAGTGGCTCACATGTCA---------------G-AAAAA----------------------AGTTTGTCCTCCCTTAGGGGAATCTTGAAGGCTGTCAATGTTCTAACCATGAGGAATC-ACAAAA-TCTATACGGAACATTCCAACATGTGCAGGC---CTGAT--AGGTC-TCAGAGCA---ATGTTCTATGGGAGT-CTGAGTTTTGCAGG---------CTTCTCACTTGGTGGA---CTGGGAATGTCAGTGAGA------------------------------------------------------------------------GGCGTGCTTTA-----CAAG---GGAGGGGAA--GTG---------GTGTCTGAATCTGCTCAGAGACA----GGCCCACTACTTA--ATTTAAGAAGGCAGTAG-----AAggccgg------gcgcagtggct------------------------------------------cacgcctgtaaccctagcactttgggaggccaaggagggcggatcacctgaggtcaggagttcaaaaccagcctagccaacatggtgaaaccccgcctctactaaaaatacacaaaaattagctgggtatggtggtgggcgcctgtaatcccatctactcggcagctgaggcagga s panTro2.7 27371271 3233 + 160261443 ctactaaaaatacaaaaaattagacagttgtggtggcg------ggcgcctatagtcccagatactcgagaggttgtggcaggagaatcgcttgaacacgagaggcg------gagcttgcagtgagccgagatcgcgccactgc--------actccagcctgagcgacagagcaagac-----------tcagtcttgaaaaaaaaaaagaaactctgaaaagatagaatacaaactaagaatactgattattggggtt-ggggtgtttaggaactaagcatgat----gaa----aggagtggaaaggaGAATTTTCATG--ACATGCCTTCTTATTCTT-----TTTATTTTTC--------AACTATATTGCCTATTCAAAATAT-T------------------CAATTTA-----------AAAAGAAAGAGATAATAGCTTCATTCAGTGC-----------------AAGGAGGCTA----------AAAGAAAGAAGAACTACACTAAGTAAGAAAGTCTCATTC--TTACTCAGGCTATTGGCACTATAGTTTGGGGGAAAGAATA----AAT--TATCAGGAAACTGAA------------------AAAT--AAAATTTAG-------------------------AAAAT--CACCAGTAAAAGCAGCTAGGACTGG---TTCTGGTTGAAGGACAGGCTAAAAGAC---AAA-AACATTATCTACCAATCTTATG---GCTTTGCTGATT--CATCTGTGTTTTAACAGTGAGCAAAAAGTAT--TTTGAAGACAAAT-AACATTACAGCAGGATCAAATGC----TCTCTCCTTAAGCAT-------------TTTCTTCAGT---------------TTTCTAAAAGATATCCCATGTGCTGCTT----CTCTCACATCCCAGATTACAAAGGCagcatggtgaagagggaagcactggagcc-ctggtgcaatgctga------ctagcctcagttccagctttaaca----cttaggtgctgtatggcctgtacacattatttaaccacatcgtgctttgtttcttcacctgtacagtggagataagaagagtatctacctcataaggtcactgtgaggattaatc---aagttaatacac---caaaacatgtagaacagcgcctggctcacagtaagaa--ctctgta-aatgtttgctcttTTACTTGCTCTTCA----ACTGTTT--TGCTGTT---------------TGTCTTTC--TT-TAAAAGTGCAGCCTCCAA--GGCCTAAA-----ACTTACCCT--TTCCACTTCCCATTAACCC------TTGTTCTTT--------TTTTT-TCTC--CATTTTCCTTCTAC---TTTTCTTTTTTAAAGAGG------------------------------------G-----ATACAA-------TCAGTCA-------------CT----------------------AAAATACTCCCACAGCATTTTTGAGACAAGATCATCTCAAAGAAAAATATTCATAAAGGAAATAGAAA---------------GTG--TGGTGTTT-----GCCAGAAAAATTCAGAATTTAAAACATTGGCataaagataatttcttacatttctatatcactctatatagtgatataggtt-atctcatttgatccttacaacaaccctttg--agACCATTAGGG---------------CAGTAAAAGAAT-ACAA-GGCAAATGA-GATTAAAA--GGGTTGCCTG-----AGGCTAAATTG---------------GTGACAATATCTGACCAGCTCAGTTCGACAACAATTTATTGAACACCTGCCACAGCTTGGCCACTTGTGCTGACCTCCAAATTCT-A-AATGCTCTCTG--------CTACAAAGAGTTTACATGGTACAAAACACCTCTCAAGAGCTTCACTCAACTTGATAATCATGCTACTT-AAA-----AGC----TACTATAggccgggcacagtggctcatgcctgtaatcccagcattttgggagtccgaggcaggcagatcatgaggtcaggagtttgagacagcctgactaatataagtaaaaccccgtctctactaaaaatacaaaatttagccgggtgtggtggcacaagcctgtaatcccagctactcaggaggct-gagacaggagaattgctagaaccagggaggaggaggttgcagtgagccgagatagtgccactgcactccagcctgggtgacagggtgagactccgtctcaaaaaacaagaaaagaaaagagaagagaagagaaaagaaaagaaaagaaaagaaaaaaaagagaaaaAGCTGCTAT-AGTATCAGATAGTAGAAAGGAACAG-G----GATTCCCTGGCAAAAGTATATTGCgctgcatgatcttgggcaaattacttaactactctatgccagttttctc-TCCttttttgttaaattctttttcttttatagagataggatctcctatgttgcccaggctgttttcaaactcctgggctcaagtgatccctctgcctcagcctcccaaaatgctgggattacaagcatgagccaccTCAATCACCAGctaagccagttttctcatacctaaatatatgtattatact-taccacca---ggtggttgt-aagggttaaatgagagaatgaatataaa--atctg-ttgtaaactgt---------aaCATCCCATC--GGGTATTAGTT---TTTTTGGTG-----TTAATCTGATTTAGCAGTGGAATGCAAGATGGAACCTAGGCGGGGGTGGAGGGAAAAAAAAGTCTGATAGAAAAACATCTTTAGGTACTCAGCCCTTAAAA-GACCTCCC--AGGGAGAGTAGCAACATTACAAAAA-CTCACA--GTTTCCCCTGTGGAGGGTACCCA-CTGAGCTAACAGAGGTAGGCCTCATGGGTCAGCCCCA-TTCTACCAAATGTA--TTCT---TTCCCATTTGCTCCAGC----TGGTGGTAACAGGTACAGAG--------------GGAGCAAA------CCAGACAGCTGGTGCCACATGAAACAGAAAGATC----TGTGCTTCACCGTAAGG--------------------------------------------------------------------------------------------AAA----------AAAAAAAAACTGTGGGAAA--TAGTGCAAGAACAAAAATAAGCAGGCAAG-T-GCTTGGGGCATTTCAGCTG--------GTAAGT----------GAG----------------A--------GAGAG---AAGCAGCCCCAAGACAGATGCAGTCCACG-CCCTCCATCTGTAACCAGAGAGTGGCTCACATGTCA---------------G-AAAAA----------------------AGTTTGTCCTCCCTTAGGGGAATCTTGAAGGCTGTCAATGTTCTAACCATGAGAAATC-AAAAAA-TCTATACGGAACATTCCAACATGTGCAGGC---CTGAT--AGGTC-TCAGAGCA---ATGTTCTATGGGAGT-CTGAGTTTTGCAGG---------CTTCTCACTTGGTGGA---CTGGGAATGTCAGTGAGA------------------------------------------------------------------------GGCATGCTTTA-----CAAG---GGAGGGGAA--GTA---------GTGTCTGAATCTGCTCAGAGACA----GGCCCACTACTTA--ATTTAAGAAGGCAGTAG-----AAggccgg------gcgcagtggct------------------------------------------cacgcctgtaaccctagcactttgggagaccaaggagggcggatcacctgaggtcaggagttcaaaaccagcctagccaacatggtgaaaccccgcctctactaaaaatacacaaaaattagctgggtatggtggtgggcgcctgtaatcccatctactcggcagctgaggcagga s rheMac2.3 97217863 1688 - 196418989 CTACTAAAAATACAAAAAATTAGCCAGTCGTGGTGGCG------GGCGCCTATAGTCCCAGCTACTCTGGAGGTTGACTCAGGAGAATCACTTGCACCCGAGAGGCG------AAGCTTGCAGTGAGCCAAGATCATGCCACTGC--------ACTCCAGCCTGAGCGACAGAGCGAGAC-----------TCAGTCTAGAAAAAAAAAAA------CTGAAAAGATAGAATACAAACTAAGAACACTGATTATTGGGGTT-GGGGTGTTTAGGAAATAAGCATGAT----GAA----AGGAGTGGAAAGGAGAATTTTCATG--ATATGCCTTCTTATTCTT-----TTTATTTTTG--------AACTATATTGCCTATTCAAAATAT-T------------------CAATTTA-----------AAAAGAAAGAAATAATAGCTTTAATCAGTGC-----------------AAGGAGGCTA----------AAAGAAAGAAGAACTACACTAAGTAAGAAAGTCTCATTC--TTACTCAGGCGATTGGCACTATAGTTTGGGGGAAAGAATA----AAT--TATCAGGAAACTGAA------------------AAAT--AAAATTTAG-------------------------AAAAT--CACCAGTAAAAGCAGATAGGACTGG---TTCTGGTTGAAGGACAGGCTAAAAGAC---AAA-AATATTATCTACCAATCCTATG---GCTTTGCTGATT--CATCTATGTTTTAACAGTGAGCAAAAAGTAT--TTTGAAGACAAAT-AATGTTACAGCAGGATCAAATGC----TCTCTCCTTAAGCAT-------------TTTCTTCCAT---------------TTTCTAAAAGATATCCCATGTGCTGCTT----CTCTCACATCCCAGATTACAAAGGCAGCATAGTGAAGACG-AAGCACTGGAGCC-CTGGAGCAATGCTGA------CTAGCCTCAGTTCCAGCTCTACCA----CTTAGGTGCTGTATGGCCTGTGCACATTATTTAACCACATGGTGCCTTGTTTCTTCACCGGTACAGTGGAGATAAGAAGAGTATCTACCTCATAAGGTCACTGTGAGGATTAATC---AAGTTAATACAC---CAAAACATGTAGAACAGCGCCTGGCTCACAGTAAGAA--CTCTGTA-AATGTTTGC-CTTTTACTTGCTCTTCA----ACTGTTT--TGCTGTT---------------TGTCTTTC--TT-TAAAAGTGTAGCCTCCAA--GGCCTAAA-----ACTTACCCT--TTCCACTTCCCATTAACCC------TTGTTCTTT--------TTTGT-TCTC--CATTTTCCTTCTAT---TTTTCTTTTTTAAAGAGG------------------------------------G-----ATACAA-------TCAGTCA-------------CT----------------------AAAATACTCCCACAGCATTTTTGAGACCAGATAATCTCAAAGAAAAATATTCATAAAGGAAATAGAAA---------------GT-----GTGTTT-----GGCAGAAAAATTCAGAATTTAAAACACTGGCATAAAGATAATTCCTTACATTTCTATATCACTCTGTAAAGC--TATAGGTT-ATCTCATTTGATCCTTACAACAACCCTTTG--AAACCATCAGGG---------------CAGTAAAAGAAT-ACAA-GGCAAACTA-GATTAAAA--GGGTTGCCTG-----AGGCTAGATTGCATATTTCA-GGTTAGTGACAATATCTGACCAGCTCAGTT---CAACAGTTTATTGAACACCTGCCACAGCTTGGTCACTTGTGCTGACCTCCAAATTCC-A-AATGCTCTCTG--------CTACAAAGAGTTTACATGGTATAAAACACTTCTCAAGAGTTTCACTCAACTTGATAATCATGCTACTTAAAA-----AGC----TACTATAGGCCAGGCGCGGTGGCTCATGCCTGTAATCCCAGCATTTTAGGAGGCCGAGGCAGGCGGATCATGAGGTCAAGAGTTTGAGACAGCCTGACTAATAT-GGTAAAACCCCGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=10.2 s hg18.7 27037531 77 + 158821424 cagtgagctgaggtcgcgccactgcactccagcccaggcgacagagtgagactccatctc-----aaaaaaaaaaaaaaaaa s panTro2.7 27374534 78 + 160261443 cagtgagctgaggtcgcgccactgcactccagcccaggcgacagagtgagactccatctcaaaaaaaaaaaaaaaaaa---- s rheMac2.unknown 0 0 + 0 ---------------------------------------------------------------------------------- a score=-560.4 s hg18.7 27037608 2078 + 158821424 GGGcagtagaacagggtggttaagtaagccaactgtcagtcaaacaa-cctgagttcaaatcccaa-atccactacttacttacttaacctatgtgatttagggttgcttaattttgctAAATTGCTTAACTTTAGTAGCAACATTTCCtaactttggtagcaaagttgcttaacc----tgacta------------------ag------------cttcat-tttttgatctgt----aaaataggggcgaatagtag----------aagaatgttgtaa----tga-ataaga-------------tgcttgtaaaacaattaggaagtgcctggtacaaagtgagcagc-----caataaatgctggcta--------ttTCAGTATTGTTTCAAAAGGCAAGTTTATTAGGTTACCTAGT-TCCTAAGGCCTAGAGAACAGGAAGTTAAAAGTGAAAGAAAGTGAAAATGTTTCTGTAGCATCAAAC-----A-GTAG------C--------------------ACATTCACTGGCAAGTGAGATAAGT-TTCAAATGAAAC---CTTATGAACTATTTTA---GATAAGTTAAACATACACGTAGAA-AGACAATGACTAAATACTCAG----TCACTAAAT--A-c-tagaatca----gagctctatttggattcca-gc----tccatctattaatagctctgtgccctt-----------------gg--------ctttatgcctctg-ttccacatttgtaaaatgaggatgataat-----------agta---tatacctcataatgttggagtaaggataaaaataaatgaggcaatgcctg--------------------------------------------------------------------------------tctcagtac-----------------------aggccttagtaca--gtcact-accaatgaaaagtacttaataattagtagg-------tactgttT--CCTTTATTAC-AAA-----AAAAAAATCAG---------AGGGCTATTTGTTAACCAAATTGAAAGCCTAAC-TCTCTGAACAGAGAAAGT------AAAATA-TAGT----------------GTTTTTT-----------GAGA--ATCAGTTCTTGCTCTTACCAGAAGTA-----ACT-TTT--CTATTTG-----------------------------AAGAAAATGTGTCAGTCTTTCCTAGGAAGAACTAATTTAC--------------CCAGGGTAT-CA----------TAACACTTT-------TAGATTGGTCCACCCTAC-----------AATCTTGC-----TCTTACTATTGTGCTCTA------ACTAAACTAAGCA-------G-AAAATTTATCTGAGGTAATT--GAAAAATCTGAATTG--TCTGACAGCTATGATTAAT-ATTCTGCCCATATTTA--------------------TAAT-TAAGTCATAGCCA--TAAAA---------------------------------------------------------------------------------TAAGGCAAA--------TG---TCT-CAAAA--AAT--TCTAGC-AAAAATTAAAC------TA-CATTTGCTTAAAGATTT-----------ATCAGTCTT------ACAAT-TCATTCC----ACATATTTA-----AAAAGTTTGCCAGTTCAGTAAAATTTAGTA---GTAA-CAAAATA-A-AATGT----------ATATTAAGTACATCAGAAATTAAAAATACACCCACTCacttattcattcaaaaaacatttctgaatgcctactatgtgccaaacact--------gccctaTG-TTTTAAATCAAATATAC-------TGTATTT--------------------------GTTGCC--TT-----TTACA-AACTTCTTT-CATTTAT-CA-TT-------TTCCATA--TTTCATTCAAA-CTTTCACATAACCTGAT---AACACTGCAAACTGATTAA-AAGAGTT----AACTA--------TAA------------------------A--------------A-GC----CCTGTCACTTTAAGAATTTGTAAT--TTT-TTCCATTAACATTCCTCTCTGGTTTTATGTACTTGGTCTGT------------GC--TGTGGGATGTAGCATAAATTATCTGCCTTCAGCAAAACGAGCAGCTGAAATGTGA-GGCTG-CCTGACAGTGCTTGTTAAGCCATTAGC-TATTGTG--AGCACACACTAC-------TAGGGA-TG---TCTGGCTCTCATGAGAAGTGTTTAAGTGGTTCAAAATATAGGAGTT--------------------------------------------------------------------------------------------------------TGGTCATGCAGTAC--AAAAAAAACAAGCCC-AGTA-TT----TTAGCACCATGC-----------------------------------------------------------------------------------------------------TTAGGGGT------------------------------------------------------------TAATTAATAAAA----------AGGATG-AAAACAA---------------------------------------------TCCTGGGATGTTTA--TTTTTAA---------AGAAAAGTATT---ACAA---GTGAACACTTTGTG------------ATTTACT--------GAAAGCCAGTAAC---AGGATAGGATGAAACAATA--TTTTTAGC-AAAATCC--TTC-TACCA--CAGTCCAAG--AA--AATA-----A--------GTGTAtttctt-tttttcttttttttttctggagacggaatctcactctctcgcccaggctggagtgcaatggcatgattttggcttactgcaacctccgcctcccgggttcaagcaagtct-ctgcctcagcctccagagtagctgggattacaggcacctgccagcacacccagctaatttttgtattt s panTro2.7 27374616 2081 + 160261443 aGGcagtagaacagggtggttaagtaagccaactgtcagtcaaacaa-cctgagttcaaatcccaa-attcactgcttacttacttaacctatgtgatttagggttgcttaattttgctAAATTGCTTAACTTTAGTAGCAATATTTCCtaactttggtagcaaagttgcttaacc----tgacta------------------ag------------cttcat-tttttgatctgt----aaaataggggcgaatagtag----------aagaatgttgtaa----tga-ataaga-------------tgcttgtaaaacaattaggaagtgcctggtacaaagtgagcagc-----caataaatgctggcta--------ttTCAGTATTGTTTCAAAAGGCAAGTTTATTAGGTTACCTAGT-TCCTAAGGCCTAGAGAACAGGAAGTTAAAAGTGAAAGAAAGTGAAAACGTTTCTGTAGCATCAAAC-----A-GTAG------C--------------------ACATTCACTGGCAAGTGAGATAAGT-TTCAAATGAAAC---CTTATGAACTATTTTA---GATAAGTTAAACATACACGTAGAA-AGACAATGACTAAATACTCAG----TCACTAAAT--A-c-tagaatca----gagctctatttggattcca-gc----tccatctattaatagctctgtgccctt-----------------gg--------ctttatgcctctg-ttccacatttgtaaaatgaggatgataat-----------agta---tatacctcataatgttggagtaaggataaaaataaatgaggcaatgcctg--------------------------------------------------------------------------------tctcagtac-----------------------aggccttagtaca--gtcact-accaatgaaaagtacttaataattagtagg-------tattgttT--CCTTTATTACAAAA-----AAAAAAATCAG---------AGGGCTATTTGTTAACCAAATTGAAAGCCTAAC-TCTCTGAACAGAGAAAGT------AAAATA-TAGT----------------GTTTTTT-----------GAGA--ATCAGTTCTTGCTCTTACCAGAAGTA-----ACT-TTT--CTATTTG-----------------------------AAGAAAATGTGTCAGTCTTTCCTAGGAAGAACTAATTTAC--------------CCAGGGTAT-CA----------TAACACTTT-------TAGATTGGTCCACCCTAC-----------AATCTTGC-----TCTTACTATTGTGCTCTA------ACTAAACTAAGCA-------G-AAAATTTATCTGAGGTAATT--GAAAAATCTGAATTG--TCTGAGAGCTATGATTAAT-ATTCTGCCCATATTTA--------------------TAAT-TAAGTCATAGCCA--TAAAA---------------------------------------------------------------------------------TAAGGCAAA--------TG---TCT-CAAAA--AAT--TCTAGC-AAAAATTAAAC------TA-CATTTGCTTAAAGATTT-----------ATCAGTCTT------ACAAT-TCATTCC----ACATATTTA-----AAAAGTTTGCCAGTTCAGTAAAATTTAGTA---GTAA-CAAAATA-A-AATGT----------ATATTAAGTACATCAGAAATTAAAAATACACCCACTCacttattcattcaaaaaacatttctgaatgcctactatttgccaaacact--------gccctaTG-TTTTAAATCAAATATAC-------TGTATTT--------------------------GTTTCC--TT-----TTACA-AACTTCTTT-CATTTAT-CA-TT-------TTCCACA--TTTCATTCAAA-CTTTCACATAACCTGAT---AACACTGCAAACTGATTAA-AAGAGTT----AACTA--------TAA------------------------A--------------A-GC----CCTGTCACTTTAAGAATTTGTAAT--TTT-TTCCATTAACATTCCTCTCTGGTTTTATGTACTTGGTCTGT------------GC--TGTGGGATGTAGCATAAATTATCTGCCTTCAGCAAAACGAGCAGCTGAAATGTGA-GGCTG-CCTGACAGTGCTTGTTAAGCCATTAGC-TATTGTG--AGCACACACTAC-------TAGGGA-TG---TCTGGCTCTCATGAGAAGTGTTTAAGTGGTTCAAAATATAGGAGTT--------------------------------------------------------------------------------------------------------TGGTCATGCAATACAAAAAAAAAACAAGCCC-AGTA-TT----TTAGCACCATGC-----------------------------------------------------------------------------------------------------TTAGGGGT------------------------------------------------------------TAATTAATAAGA----------AGGATG-AAAACAA---------------------------------------------TCCTGGGATGTTTA--TTTTTAA---------AGAAAAGTATT---ACAA---GTGAACACTTTGTG------------ATTTACT--------GAAAGCCAGTAAC---AGGATAGGATGAAACAATA--TTTTTAGC-AAAATCC--TTC-TACCA--CAGTCCAAG--AA--AATA-----A--------GTGTAtttctt-tttttcttttttttttctggagacggaatctcactctgtcgcccaggctggagtgcaatggcatgattttggcttactgcaacctccgcctcccgggtttaagcaagtct-ctgcctcagcctccagagtagctgggattacaggcacctgccaccacacccagctaatttttgtattt s rheMac2.unknown 0 0 + 0 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- # synteny group 0 a score=93.6 s hg18.7 27039745 206 + 158821424 atccacccgtctcggcctcccaaagtgctgggattacatgggtgagccaccgcgcccagccAAAAATAAGTGTATTTCTAAAACACAAAAGTGGTTGTTTGTTTAACtaaaaattatttttaaaatattaCCTCTT--Tggccgggtttggtggctcacgcctgtaatcccagcattttgggaggccgagggaggtggatcacaaggt s panTro2.7 27377110 206 + 160261443 atccacccgtctcagcctcccaaagtgctgggattacatgggtgagcaaccgcgcccagccAAAAATAAGTGTATTTCTAAAACACAAAAGTGGTTGTTTGTTTAACtaaaaattatttttaaaatattaCCTCTT--Tggccgggtttggtggctcacgcctgtaatcccagcattttgggaggccgagggaggtggattacaaggt s rheMac2.unknown 0 0 + 0 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- # synteny group 0 a score=311.8 s hg18.7 27039951 3582 + 158821424 caggagttcaagaccagcctggccaagatgatgaaaccccatctctactaaaaatacaaaaattagccagatgtggtgtcaggcgcctgtaatcttagctactcgggaagctgaggcaggagaatctcttgaacatgggaggcagaggttgcagtgatccgagatg--------gcaccactgcactctagcctaggcgacagagcaagactccgtctcaaaaataaa---------aata-aaataaaaataaaa---------------------------------------------------------aa-aTAT----ATATATCCTCTTTTATTCTCCCCACATCCATTTGCTTGCACTATCTGCAATAACCTGCTATACC-CCTCCACTGCTCC-CTTATCTCT--ATACCAGG-CCTTATGGAAATCCTTTTCAGTTTTGTACAGCCCAACTCAGAAGCACCCCCTCTTCCATAT-GCCTCCTTACCCTCATC----------TGCCACCCCAGAGTGTTTTCACATGGC---CCTGGCT-GAAAGAGATCTCAGCACCCAGAGAAATCTGGGCACTAATTCATTGTCCTTCTTACCTCTTCTGTACCTTCTCTTAGGCCATCTTGTTTTATACTTACTGGTGTCTATATCTATCTCGTCAACTCGA-----C-TTTGAGTTTATTCAT-TTTGCATTTCA----------CACAATGCCTAGTTC------AAATTCTGTTAAGCGTCAGGTGAATAAGCCTGCTTAATACATTCATActttatgtacctca--atttcctcatctagcaagtgagcctaata----atatctg-ccctgcctaagtagagtttgttatgccatcaaatcagataacatatgtaaaagcgtttttgaaaactactgcacatTtgtcttagtccattcagtctattatttttaaaaataccttagactgggtaatatacaaagaaatttatttctcatagttctagaagctgggaagtccaagatcaaaatgccgacagattcagtgtctggtgatggctttttgcttcacagatgtgtcttcttgctaagtcctcacatagtggaagagcaaaaaggctccctcaagcctcttttataaaagcaccaatcctattcatgagggcagagtcctcatgacctaatcacctccccaaagccccactatttaatattattgcattggagattaggtttcaacatacgaatttggtgagggaacaaaaacattcagaccatagcaCATtctttggcaagcaatttggcaatgtttatcaaaagccttaaatctttttcttttttctttttttctaagagacatggtcagccggacacagtggctcacgcctataatcctagcactttgggaggccgaggcaggtggatctcctgaggtcaggagtttgagaccagcctgaccaacatggcaaaaccctgtctctactaaaaatacaaaaatcacccaggcgtggtggtgcatgcctgtaatcccagctactcaggaggctgagacaggagaactgcttgaacccaggaggccgaggttgcagtgaactgagatcgtgccactgcactccaggctggcaacagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaagacagggtctcactctatcacccaggctggagtacagtggtatgataatagctcactgcagcttcaaactcccgggttcaagcaatcctcccacctcagcctcctgagtagctaggcgtataagcatgcaccatcatgcctggcttttttttaatttttttgtagagatggggtctcactatgtttcccaggctggtcttgaactcctgggctcaagtgatcctcctgcctaggcctcccaaagtgctgggattaaaggcatgagccacactgcacctggtcttattttttcttattcactaattatacttccagtttttaatcctaaggaaaaaaatgtaaacatggaaaaattttaagcacaacaatgttcagatattacatctaataataatgaatgtgaaataatttaaacatccaacaaaggggaatggctaagtaaattactgcatattgacttgatgaaacattatacaataatttttaaattataaacattattttaagagatgatataat---tacagaaatgaggaatgtttaagatgaagtgttaaaagaaaaaatgtagcatcgaaattgtacatctatcttgacaa-tatataaaaaagaaacatcaattcaccaaaaaaaaaatgattgca---agtacactaaaatgctaataaaagttattccaaggtaagag---aatgagtagtttcttttctatattattttatgttttccaaatgttgt----taagtacacattaccttgaaaataaaaagaCTccaggcatagtggctcacacctgtaatcccaacactttgggaggccaaggcaggaggattgcttgaggtcaggtgttcaagactagcctgggcaacacagcaagaccctgtctctacaaaatttttttttaattagctgggtatggtggtgtgtgcctatagtcccagctactccggaggcttgagtcaagaggattgcctgaacccaggagtttgagactgcagcaagctatgattatgccactgcactgaggcctgggtgacagagtgagaccttgtctcttaaaaaaaTTTAAAATAGGACCAGGgggcaggcatggtgactcacgcttgtaatcccagcactttgagagggcaaggagggcggatcatgaggtcaggagttccagaccagcctggccaacacagtgaaaacccgtctctactaaaaatacaaaaattagctgggcatggtggcgggcacctgtaatcccagctacttgggaggctgaggcaggagaattacttgaatccgggaggcggaggttgcagtgagccaaatcacgccactgcactccagcctgggtgacagagctagactcaatctcaagaaaaa-aaaaaaaaaTAGggctgggtgcggtgacacatacctgtaatcccagccctttgggaggccgaggcaggtggattcgagaccagcctggcttacatggtgaaaccccatttctactaaaaaaaataca-aaaaaattagccaggcatgatggcaggcacctgtaatcccagctactagggaggctgaggcaggagaatcacttgaacccgggagggaggcagaggtcgcagtgaaccaagatcgcgccattgcactcctgcttggacaacaagagtgaaactccatctcaaaataataataataataataataataataataataataataataataaggttgggcatggtggctcacgcctgtaatcccaacagtttgggaggccgaggcagatggatcatctgaggtcaggagttcgagaccagactggccaacatggtaaaaccccatctctactaaaaatacaaaaattagccaggtgtggcagcgcacctgtattcccagctactcaggaggctgaggcaggagaatatcttgaactcgggagatggaggctgcagtgagctgagattgtgccactgcactccagcctgggcgacagagtgagactccacctcaaaaa-aagaca--aaataaataaacaaaT-----AATAAAA---AGAAAGATAAACTT-TCAACAGTAATTAAAAAGCTATATAAAT s panTro2.7 27377316 3567 + 160261443 caggagttcaagaccagcctggccaagatgatgaaaccccatctctactaaaaatacaaaaattagccagatgtggtgtcaggcgcctgtaatcttagctactcgggaggctgaggcaggagaatctcttgaacatgggaggcagaggttgcagtgatccgagatg--------gcaccactgcactctagcctaggcgacagagcaagactccatctcaaaaataaa---------aata-aaataaaaataaaa---------------------------------------------------------TATATAT----ATATATCCTCTTTTATTCTCCCCACATCCATTTGCTTGCACTATCTGCAATAACCTGCTATACC-CCTCCACTGATCC-CTTATCTCTCTATACCAGG-CCTTATGGAAATCCTTTTCAGTTTTGTACAGCCCAACTCAGAAGCACCCCCTCTTCCATAT-GCCTCCTTACCCTCATC----------TGCCACCCCAGAGTGTTTTCACATGGC---CCTGGCT-GAAAGAGATCTCAGCACCCAGAGAAATCTGGGCACTAATTCATTGTCCTTCTTACCTCTTCTGTGCCTTCTCTTAGGCCATCTTGTTTTATACTTATTGGTGTCTATATCTATCTCGTCAACTCGA-----C-TTTGAGTTTATTCAT-TTTGCATTTCA----------CACAATGcctagttc------aaattctgttaagcgtcaggtgaataagcctgcttaatacattcatactttatgtacctca--atttcctcatctagcaagtgagcctaata----atatctg-ccctgcctaagtagagtttgttatgccatcaaatcagataacatatgtaaaagcgtttttgaaaactACTGCACATTtgtcttagtccattcagtctattattttttaaaataccttagactgggtaatatacaaagaaatttatttctcatagttctagaagctgggaagtccaagatcaaagagccgacagattcagtgtctggtgatggctttttgcttcacagatgtgtcttcttgctaagtcctcacatagtggaagagcaaaaaggctccctcaagcctcttttataaaagcaccaatcctattcatgagggcagagtcctcatgacctattcacctcccaaaagccccactatttaatattattgcattggagattaggtttcaacatacgaatttagtgagggaacaaaaacattcagaccatagcaCATTCtttggcaagcaatttggcaatgtttatcaaaagccttaaatctttttcttttttctttttttctaagagacatggtcagctggacacagtggctcacgcctataatcctagcactttgggaggccgaggcaggcggatctcctgaggtcaggagtttgagaccagcctgaccaacatggcaaaaccctgtctctactaaaaatacaaaaatcacccgggcgtggtggtgcatgcctgtaatcccagctactcaggaggctgagacaggagaactgcttgaacccaggaggcagaggttgcagtgaactgagatcgcgccactgcactccaggctggcaacagagcaagactctgtctcaaaaaaaaaaaaaaaaaaaaaaa-agggtctcactctatcacccaggctggagtacagtggtatgataatagctcactgcagcttcaaactcccgggttcaagcaatcctcccacctcagcctcctgagtagctaggcgtataagcatgcaccatcatgcctggctttttttaaatttttttgtagagatggggtctcactatgtttcccaggctggtcttgaactcctgggctcaagtgatcctcctgccttggcctcccaaagtgctgggattaaaggcatgagccacactgcacctggtcttattttttcttattcactaattatacttccagtttttaatcctaaggaaaaaaatgtaaacatggaaaaattttaagcacaacaatgttcagatattacatctaataataatgaatgtgaaataatttaaacatccaagaaaggggaatggctaagtaaattactgcatattgacttgatgaaacattatacaataatttttacattataaacattattttaaaagatgatataat---tacagaaatgaggaatgtttaagatgaagtgttaaaagaaaaaatgtagcatcgaaattgtacatctatcttgacaa-tatataaaaaagaaacatcaattcaccaaaaaaaaaatgattgca---agtacactaaaatgctaataaaagttattccaaggtaagag---aatgagtagtttcttttctatattattttatgttttccaaatgttGT----TAAGTACACATTACCTTGAAAATAAAAAGACTccaggcatagtggctcacacctgtaatcccaacactttgggaggccaaggcaggaggattgcttgaggtcaggtgttcaagactagcctgggcaacacagcaagaccctgtctctacaaaatttttttttaattagctgggtatggtggtgtgtgcctatagtcccagctactccggaggcttgagtcaagaggattgcctgaacccaggagtttgagactgcagcaagctatgattatgccactgcactgaagcctgggtgacagagtgagaccttgtctcttaaaaaaaTTTAAAATAGGACCAGGgggcaggcatggtggctcacgcttgtaatcccagcactttgagagggcaaggagggcggatcatgaggtcaggagttccagaccagcctggccaacacagtgaaaacccatctctactaaaaatacaaaaagtagctgggcatggtggcgggcacctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaatccaggaggcggaggttgcagtgagccaaatcacaccactgcactccagcctgggtgacagagctagactcaatctcaacaacaacaaaaaaaaaTAGggctgggtgcggtgacacatacctgtaatcccagccctttgggaggccgaggcaggtggattcgagaccagcctggcttacatggtgaaacccaatttctactaaaaaaaataca-aaaaagttagccaggcatgatggcaggcacctgtaatcccagctactcaggaggctgaggcaggagaatcacttgaacccgggagggaggcagaggtcgcagtgaaccaagaccgcgccattgcactcctgcttggacaacaagagtgaaactccatctcaaaataataataataataatgataataataataataa------------ggttgggcatggtggctcacgcctgtaatcccaacagtttgggaggccgaggcagatggatcacctgaggtcaggagttcgagaccagactggccaacatggtgaaaccccatctctactaaaaatacaaaaattagccaggtgtggcagcgcacctgtattcccagctactcaggaggctgaggcaggagaatatcttgaactcgggagatggaggctgcagtgagctgagattgtgccactgcactccagcctgggcgacagagtgagactccacctcaaaaataaaaca--aaataaataaacaaa------------a---aGAAAGATAAACTT-TCAACAGTAATTAAAAAGCTATATAAAT s rheMac2.3 97224007 1839 - 196418989 CAGGAGTTCAAGACCAGCCTGGCCAAGATGATGAAACCCTGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCTAGCTACTCGGGAGGCTGAGGCAGGAGAATCTCTTGAACATGGGAGGCAGAGGTTGCAGTGAGCCAAGATGGCACCACTGCACCACTGCACTCTAGCCTAGGCGACAGATCAAGACTCCATCTCAAAAAAAAA---------AATATATATATATATAAAAATGTGTGTGTGTATATATATATATAATGTGTATGTGTATATATATATCCTCTTTTATTA-TTAT----ATATATCCTCTTTTATTCTCCCCATATCCATTTGCTTGCACTATCTGGAATAACCCGCTATACA-CCTCCAACAATCC-CTTATCTCT--GTACCAAG-CCTTATGGAAATCCTTTTCAGCTTTGTACAGCCCAACTCAGAAGCACCCCCTCTTCCATAT-GCCTCCTTATCCTCATC----------TGCCACCCCAGAGTGTTTTCACATGGC---CCTGGCT-GAAAGAGATCTCAACACCCAGAGAAATCTGGGCACTAATTCATTGCCCTTGTTACCTCTTCTGTGCCTTCTCTTAGGCAACCTTGTTTTATACTTATGGGTGTCTATATCTATCTCATCAACTCAA-----C-TTTGAGTTTATTCAT-TTTGCATTTCA----------CACAATTCCTAGTTC------AAAT--TGTTAAGTGTCAGGTGAATAAGCCTGCTTAATACATTCACACTTTATGCACCTCA--ATTTCCTCATCTAGCAAGTGAGGCTAATA----GTATCTG-CCCTGCCTAAGTGGAGTCTGTTATGCCATCGAATCAGATAACATATGTGAAAGGGTTTTTGAAAACTACTGCACATTTGTCTTAGTCCATTCAGGCTATTATTTTAAAAAATGTCTTAGACTGGGTAATATACAAAGAAATTTATTTCTCGTAGTTCTAGAAGCTGGGAAGTCCAAGATCAAAGAGCC-ACAGATTCAGTGTCTGGTGATGGCTTTTTGCTTCACAGATGTGCCTTCTTGCTAAGTCCTCACATAGTGGAAGAGCAAAAAGGTTCCCTCAAGCCTCTTTTATAAGAGCACCAATCCTATTCATGAAGGCAGAGTCCTCATGACCTTATCAGCTCCCCAAAGCCCCACTACTTAATATTATTGCATTGGAGATTAGGTTTCAACATATGAATTTGGTGAGGGAACAAAAACATTCAGACCACAGTA---------------------------------------------------------------------------------------------------CACATCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCATCTGAGGTCAGGAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGAGACCAGCCTGGCTTACGTGGTGAAACCCCATTTCTACTAAAAAAAAAATACAAAAAATTAGCCAGGCATGATGGCAGGCACCTGTAATCCCAGCTACTCAGGAGGCTAAGGCAGGAGAATCGCTTGGACCTGGGAGGGAGGCGGAGGTTGCAGTGAACCAAGATCGCACCATTGCACTCCTGCTTGGGCAACAAGAGTGAAACTCTGTCTCAAAA-------------------------AATAAATA------------GGGTAGGCACAGTGGCTCACACCTGTAATCCCAACACTTTGGGAGGCTGAGACAAATGGATCACCTGAGGTCAGGAGTTCAAGATCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGCGGCACACCTGTATTTCCAGCTATTCGGGAGGCTGAAGCAGGAGGATATCTTGAATGCAGGAGATGGAGGCTGCAGTGAGCTGAGATTGTGCCACTGCACTCCAGCTTGGGCGACAGAGCGAGACTCCATCTCAAAAA-AATAAAATAAATAAATAAATAAAT-----AATAAAA---AGAAAGATAAACTT-TCAATAGT-------------------- a score=288.0 s hg18.7 27043533 100 + 158821424 ACATGAATTT-------AAGAGCTATGAATATTGTATCTTTGGATTGCATCACTTCACTAT--------TATATAGGCTCT-AGGATAGCTCATTTTCTTAAATAAAAATAAACTA s panTro2.7 27380883 100 + 160261443 ACATAAATTT-------AAGAGCTATGAATATTGTATCTTTGGATTGCATCACTTCACTAT--------TATATAGGCTCT-AGGATAGCTCATTTTCTTAAATAAAAATAAACTA s rheMac2.3 97225865 100 - 196418989 ACATAAATTT-------AAGAGCTATGAATATTGTATCTTTGGATTGCATCATTTCACTAT--------TATATAGGCTCT-AGGATAGTTCATTTTCTTAAATAAAAATAAACTA a score=743.0 s hg18.7 27043633 709 + 158821424 ACTAAATCA-GACTATGTTGTACTTCAGGCAGTACTTGTTAGACAACaaaaataaaatttaggccaggcacggtggctcacacctgtaatcccagcactttgggaggctgaggtgggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccgtctctactaaaatacaaaaattagctgggtgtggtggtgcacgcctgtaatcccagttacttgggaagctgaggcacgagaatcacttgaacccaggaggcagaggttgcagtgagcagagatggtgcctctgcactccagcctgggcgatagagtgagactctgtatcaaaaataaataatttaatgtaatttaatttaaaCCAGATTTCTTTGGTCCTAACTT-AAAAATAATTTCAATAATTTTAACCAGTGAGTAAAAATG------TCACTCCTTTCCTTTTT-------ATTACTCAAATATATTCTCACTCA---CTGTAAGAACC-TGTCTTCTGTCT-CTATAGGTG------TGTCATAAATGCTAATGTTATCTTTAAGAGTATTTC----AGAATCCAAAGCTACCTTTTCTTTCACTCACTTCTGAACATTAACCTTCTTAAGTAAACTTGCTCTGTTTGAAAGAATCATATTTGCCCATGTGTTCAACAAGCCTAAGCATTTT-TCTAGATCATCATCAAATGTCAAGGTTCACAAGTTTTTCAAATGTAC-TT s panTro2.7 27380983 709 + 160261443 ACTAAATCA-GACTATGTTGTACTTCAGGCAGTACTTGTTAGACAACaaaaataaaatttaggccaggcacggtggctcacacctgtaatcccagcactttgggaggctgaggtgggtggatcacttgaggtcaggagtttgagaccagcctggccaacatggtgaaaccccatctctactaaaacacaaaaattagctgggtgtggtggtgcacgcctgtaatcccagttacttgggaagctgaggcacgagaatcacttgaacccaggaggcagaggttgcagtgagcagagatggtgcctctgcactccagcctgggtgatagagtgagaatctgtatcaaaaataaataatttaatgtaatttaatttaaaCCAGATTTCTTTGGTCCTAACTT-AAAAATAATTTCAATAATTTTAACCAGTGAGTAAAAATG------TCACTCCTTTCCTTTTT-------ATTACTCAAATATATTCTCACTCA---CTGTAAGAACC-TGTCTTCTGTCT-CTATAGGTG------TGTCATAAATGCTAATGTTATCTTTAAGAGTATTTC----AGAATCCAAAGCTACCTTTTCTTTCACTCACTTCTGAACATTAACCTTCTTAAGTAAACTTGCTCTGTTTGAAAGAATCATATTTGCCCATGTGTTCAACAAGCCTAAGCATTTT-TCTAGATCATCATCAAATGTCAAGGTTCACAAGTTTTTCAAATGTAC-TT s rheMac2.3 97226294 709 - 196418989 ACTAAATCA-GACTATGTTGTATTTCAGGCAGTACTTGTTAGACAACAAAAATAAAATTTAGGCCAGGCATGGTGGCTCACACCTATAATCCCAGCATTTTGGGAGGCTGAGGCAGGGGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTAGCCAATATGGTGAAAACCTGTCTCTACTAAAATACAAAAATTAGATGGGTGTGGTGGTGCACACCTGTAATTCCAGCTACTTGGGAAGCTGAGGCACAAGAATCACTTGAACCCAGGAGGGAGAGGTTGCAGTGAGCAGAGATGGTGCCAATGCACTCCAGCCTGGGCGATAGAGTGAGACTCTGTATCAAAAATAAATAATTTAATTTAATTTAACTTAAACCAGATTTCTTTGGTCCTAATTT-TAAAATAATTTCAATAATTTTAACCAGTTAGTAAAAATA------TCACTCCTTTCCTTTTT-------ATTACTCAAATATATTCTCACTCA---CTGTAAGAACC-TGTCTTCTATCT-CTATAGGTG------TGACATAAATGCTAATATCATCTTTAACAGTATTTC----AGAATCCACAGCTACCCTTTCTTTCACTCACTTCTGAACATTATCCTTCTTAAGTAAAGTTGCTCTGTTTGAAAGAATCATATTTGCCCATATGTTCAACAAGCCTAAGCATTTT-TCTAGATCATTATCAAATGTCAAGGTTCACAAGTTTTTCAAATGTAC-TT a score=4257.0 s hg18.7 27044401 3460 + 158821424 ggcatggtgactcacccctgtaatcccagcactttgggacgccaagacaggtggatcgcttgagcccaggagtttgagaccagcctgggcaatatagtgagacttcatctctacaagaaacaatttaaaaagtagcaaagcatagtggcaggtgactgtagtctcagttactgaagaggctgaggtggaaggactgtttgagcccaaaaggtagaggctgcagtgagctgagatcgtgccactgcactccagcctgggtaacagagcaagaccctgtc--------------------aaaaaaaaaaaagaagaggaagaaaagaaa-ATGTCTACTACTT----GTCAGAAAATCTCATTCCATAAAGTCA-TGTTTC-------TAAATGTG-AATGATTT-TGTGTTACCTTAAATATAAAATT-AAAA-TACTTG--------TTTTTCA-----TTTTCTGGTA--ATTTTC---------ATGCACT-TTTTAAAACACATCTCTTA----CCGGA--GTTTGCAATTCCCATTCTCTTTCTAGTAATA---TCTAT-ATTGATTTAATTTACATAGC------AAATAG-TCTTTACCAA-GGAGAAA--AAAATCTAACTTTTAAATTTTTTCCAAA-CCCAAATCTTCCTTTTAGAGAACTT-GAAT-AAAAAAACTGCCTTA--TTTGACTATGTCATTGCTCTTTCCCAAG-------TTAATTTTATGACTATGTCTTTG-------TATTGAA-TTTGTTCACTCACATCTAACTGACCCAAATG-CCTTATCAAGTGCCCAAATCAGGTCAAGGATA--AG----A---------GCTGCTAGTGATGCTATTTTG-AGAAGAAA-CAAAATGTACTGTAA--TATACCAGTTCCCAT-TATGCCAAAATG-CACCATTTCTTTGGCACATA-----------CATGT-----------------TATGTTTTACCAATAAGAGAAACAGTGATGAGCTGAGAAGGTAGTTCATCT----------GTACAGAAT-GGTTTGACTA-TTTTGTCT--ATGGATATTCACTGAAACCTTT-C---T-----AAA-------GTGTGGTTAGTATA-TGAAAGCATATATTTTGATTTACAAATGCAGAATT--------------------TTACTTGCTAC----ATATAGGTGA---------TCAT-TAG----------TCCTTTCAaggacgggaaatgtccctttttt-----------------aattgagatggagttttgctctttt-ggtccaggctggaatgcaatg-------gtgtg-atctcggctcactgtaacgtctgcctcccggattcaagcgattctcctacctcagcct---------------------------cccaagta-gctgggattacagg-catgcaccaccacgccc-------agctagttttgtatttttagtagaggca----gggtttc----tccatgttggtcaggctggtctcgaactcc-----------------------tgacttcaggtga-----------tccgcctgcctcagcctcccaaagtgctgcgattacaggcgtaagccac-cgtgccggaccaagaaatgtatttct-tttaccttt-gtacactgagtat----ctagcccattgcct-gcacattgtaagtgcttaagaagtgt-----ttgttaaac--------cagtgaTACCACAACACAGTTGACTT-------ATTGAAAAGCAACTGCCAA-----GTTGTACCATACTGCAACAG----------------------------------------------------------------------------------------------------------------------GCACTGTGGCTAATTAGCTCAGTTTATTAGTGCAAGGAAG-T-----GAGGTCAAGGACTCAATTCCCAAAAGGATCTTTT--GGCCTTATTCTAGTCACAATT---------TCATACCTTGTTCCATCCAACAAGCCATCTCTCCTATGACTGCAAGGAGAATCAGAC------AAGCAGA------GGCAGAAAGAAATAG--TTTAACACAATTCATCACCATTCTAATACAGATAATTTAGAAATTAAACAGGTA---A--------TAAATGA------------ACTGTGCATCCTTTTGATATG----AAAAAT--TCCAATATT--------------------------------TCAGTATGTGagatttgg----------------------------ttataagggtaaaataaaaagttctggagat-----aatggttacaaaacaatgtgta---tgacact----------------------aaattgtacatttt-------------------------aaatagttaaatggtaaatttaat---------gttatgcatattttgccacaataaaaaaTAAAGTTAAA---------TTATTAAAATGTGAAAAAAA-----------ATTATAAGTTAACACAGCTT----------------------------------------------------------------------------AAATTAACATCCAG-----------------------------------------------------------CAACCTCACATGTAAAATAAACAGGTAAAAAATGAAAAAAAAAGAGTAAAATAATAACATTAACTG-CTG----------------ATCCTTAAAGTAATACAAACTAATATAGAAACCCTGTATCATTTTATTATAACTGTAA---------------AGTTTGTCACAGAGTT---CTTATGAGGATAAT----GTCTTGTGATTGCTATAAAAAGTCATTTAATTCAAAACATTTGGCTAAT-AAAGGAT-----------------TTCTTTTTTTTGGAC----AAGGGAATTTCAAT--------AAAATG---------CTTTGCAAAAT----AA----AGAAA----ATGAATGGATACAAGACATATAGT--------CTTAAAA-ATAAAGCTTTTCTCCAAGGACTCTCAAATAAACTTCTATTATG--AA---CAGAGCCTA-TTTCAGTAGTTTGAACA-CAGGA------------------GAA----TTTTAATTTGTTTTCAAGA-T------Ttcactggctctaat-gtctcaggaaagtaagccagcttct---a--tatacacatttt----ctata-taagtggaaataatactacttactgcttcatatggggtgctatgtgaattaattg-gttaatggtcttaaagcactGCCTAAGTACTAAACGTTATCATTAGTGTGCATTGTATATCTCTTTGCAATTATCTGCCACCTTAAAATGCTGTGGCTTGTAAGGCTGCCTC-TCTCTTGGAATATTTACAA-AAGGTTAAAGAAAGTTC------------------------------------------------AAGAGG----AAAAA---AAGCA-TGTAGG-CTAAGGTAAGGCAGAAG---AAAGG-GAAATTCAAAATCTGACATGTTTTATTACATGCTTTT-TGTTACATCGTAT----------TACATGTTTCTTGAAATTAC----AGATCATTATGCTAGAAGAAAAA-ATT-TAGTCACACA--CATT----TTGAA-TT-CAAAATATGCTACATAG--TTTTAAGAAA------------------TC---AA---TCTA-----TAATAGAAC----TAAGCAAATAAAGTATACATT-----------GCATTAAGATAAAGttata-a------tttattttattataat------ttaattGTTAATCATAATAGTTACATGTTTAATCTTATTAG-----TT-GAAA------------------------GAGCCTATC-TGACATCTGTGAGACCAGATCCAATAATGCCTGTGTTTTTTTTTT-TTCTG-----CTGTTAAAGTCTTCAAATATTTTTTGGAAGATAAATTCTTAAATGCACAGAATAAAATTTCTACTGAATTAATAAGAAAAACAATAGTAGTAGTAGTAATACCTTACACTTACACAGTGAT-TTATAATTATACCAGGTAGcaagaactgtgaa-ggtctgagactttaccttaccag----tctgcaaactagtctgc--tagtttcatgggtgctgacagaagacacaagactcctggatcaaagacaagtgacagtttattactaatagcaatggcagtagccagagcatcttcattt-tcttgtggcagtagcccaagccccagttcccacagggtgac---acaagggctacgagacatgtgcacacacactgggttgtattac---agaagagtaaccctgagcttagaaaacctcagtcttttccctttgctccagagaaagacattctctcttccaaggctgtttgctataccaaaattcatg s panTro2.7 27381751 3466 + 160261443 ggcgtggtgactcacccctgtaatcccagcactttgggacgccaagacaggtggatcgcttgagcccaggagtttgagaccagcctgggcaatatagtgagacttcgtctctacaagaaacaatttaaaaagtagcaaagcatagtggcaggtgactgtagtctcagttactgaagaggctgaggtggaaggactgtttgagcccaaaaggtagaggctgcagtgagctgagatcgtgccactgcactccagcctgggtaacagagcaagaccctgtctcaaaa------aaaaaaaaaaaaaaaaaaaagaaGAGGAAGAAAAGAAA-ATGTCTACTACTT----GTCAGAAAATCTCATTCCATAAAGTCA-TGTTTC-------TAA-TGTG-AATGATTT-TGTGTTACCTTAAATATAAAATT-AAAA-TACTTG--------TTTTTCA-----TTTTCTGGTA--ATTTTC---------ATGCACT-TTTTAAAACACATCTCTTA----CTGGA--GTTTGCAATTCCCATTCTCTTTCTAGTAATA---TCTAT-ATTGATTTAATTTACATAGC------AAATAG-TCTTTACCAA-GGAGAAA--AAAATCTAACTTTTAAATTTTTTCCAAA-CCCAAATCTTCCTTTTAGAGAACTT-GAAT-AAAAAAACTGCCTTA--TTTGACTATATCATTGCTCTTTCCCAAG-------TTAATTTTATGACTATGTCTTTG-------TATTGAA-TTTGTTCACTCACATCTAACTGACCCAAATG-CCTTATCAAGTGCCCAAATCAGGTCAAGGATA--AG----A---------GCTGCTAGTGATGCTATTTTG-AGAAGAAA-CAAAATGTACTGTAA--TATACCAGTTCCCAT-TATGCCAAAATG-CACCATTTCTTTGGCACATA-----------CATGT-----------------TATGTTTTACCAATAAGAGAAACAGTGATGAGCTGAGAAGGTAGTTCATGT----------GTACAGAAT-CGTTTGACTA-TTTTGTCT--ATGGATATTCACTGAAACCTTT-C---T-----AAA-------GTGTGGTTAGTATA-TGAAAGCATATATTTTGATTTACAAATGCAGAATT--------------------TTACTTGCTAC----ATATAGGTGA---------TCAT-TAG----------TCCTTTCAaggacgggaaatgtccctttttt-----------------aactgagatggagttttgctctttt-tgtccaggctggagtgcaatg-------gcgcg-atctcggctcactgtaacgtctgcctcccggattcaagcgattctcctacctcagcct---------------------------cccaagta-gctgggattacagg-catgcaccaccacgccc-------agctagttttgtatttttagtagaggca----gggtttc----tccatgttggtcaggctggtctcgaactcc-----------------------tgacttcaggtga-----------tccgcccgcctcagcctcccaaagtgctgcgattacaggcgtaagccac-cgtgccggaccaagaaatgtatttct-tttaccttt-gtacactgagtat----ctagcccattgcct-gcacattgtaagtgcttaagaagtgt-----ttgttaaac--------cagtgaTACCACAACACAGTTGACTT-------ATTGAAAAGCAACTGCCAA-----GTTGTACCATACTGCAACAG----------------------------------------------------------------------------------------------------------------------GCACTGTGGCTAATTAGCTCAGTTTATTAGTGCAAGGAAG-T-----GAGGTCAAGGACTCAATTCCCAAAAGGATCTTTT--GGCCTTATTCTAGTCACAATT---------TCATACCTTGTTCCA----ACAAGCCATCTCTCCTATGACTGCAAGGAGAATCAGAC------AAGCAGA------GGCAGAAAGAAATAG--TTTAACACAATTCATCACCATTCTAATACAGATAATTTAGAAATTAAACAGGTA---A--------TAAATGA------------ACTGTGCATCCTTTTGATATG----AAAAAT--TCCAATATT--------------------------------TCAGTATGTAAGATTTGG----------------------------TTATAAGGGTAAAATaaaaagttctggagat-----aatgattacaaaacaatgtata---tgacact----------------------aaattgtacatttt-------------------------aaatggttaaatggtaaatttaat---------gttatgcatattttgctacaataaaaaaTAAAGTTAAA---------TTATTAAAATGTGAAAAAAA-----------ATTATAAGTTAACACAGCTT----------------------------------------------------------------------------AAATTAACATCCAG-----------------------------------------------------------CAACCTCACATGTAAAATAAACAGGTAAAAAATGAAAAAAAA-GAGTAAAATAATAACATTAACTG-CTG----------------ATCCTTAAAGTAATACAAACTAATATAGAAACCCTGTATCATTTTATTATAACTGTAA---------------AGTTTGTCACAGAGTT---CTTATGAGGATAAT----GTCTTGTGATTGCTATAAAAAGTCATTTAATTCAAAACATTTGGCTAAT-AAAGGAC-----------------TTCTTTTTTTTGGAC----AAGGGAATTTCAAT--------AAAATG---------CTTTGCAAAAT----AA----AGAAA----ATGAATGGATACAAGACATATAGT--------CTTAAAA-ATAAAGCTTTTCTCCAAGGACTCTCAAATAAACTTCTATTATG--AA---CAGAGCCTA-TTTCAGTAGTTTGAACA-CAGGA------------------GAA----TTTTAATTTGTTTTCAAGA-T------Ttcactggctctaat-gtctcaggaaagtaagccagcttct---a--tatacacatttt----ctata-taagtggaaataatactacttactgcttcatatggggtgctatctgaattaattg-gttagtggtcttaaagcactGCCTAAGTACTAAACGTTATCATTAGTGTGCATTGTATATCTCTTTGCAATTATCTGCCACCTTAAAATGCTGTGGCTTGTAAGGCTGCCTC-TCTCTTGGAATATTTACAA-AAGGTTAAAGAAAGTTC------------------------------------------------AAGAGG----AAAAA---AAGCA-TGTAGG-CTAAGGTAAGGCAGAAG---AAAGG-GAAATTCAAAATCTGACATGTTTTATTACATGCTTTT-TGTTACATCGTAT----------TACATGTTTCTTGAAATTAC----AGATAATTATGCTAGAAGAAAAA-ATT-TAGTCACACA--CATT----TTGAA-TT-CAAAATATGCTACATAG--TTTTAAGAAA------------------TC---AA---TCTA-----CAATAGAAC----TAAGCAAATAAAGTATACATT-----------GCATTAAGATAAAGttata-a------tttattttattataat------ttaattGTTAATCATAATAGTTACATGTTTAATCTTATTAC-----TT-GAAA------------------------GAGCCTATC-TGACATCTGTGAGACCAGATCCAATAATGCCTGTGTTTTGTTTTT---CTG-----CTGTTAAAGTCTTCAAATATTTTTTGGAAGATAAATTCTTATATGCACAGAATAAAATTTCTACTGAATTAATAAGAAAAACAATAGTAGTAGTAGTAATACCTTACACTTACACAGTGAT-TTATAATTATACCAGGTAGcaagaactgtgaa-ggtctgagactttaccttaccag----tctgcaaactagtctgc--tagtttcatgggtgctgacagaagacacaagactcctggatcaaagacaagtgacagtttattactaatagcaatggcagtagccagagcatcttcattt-tcttgtggcagtagcccaagccccagttcccacagggtgac---acaagggctacgagacatgtgcacacacactgggttgtattac---agaagagtaaccctgagcttagaaaacctcaatcttttccctttgctccagagaaagacattctctcttccaaggctgtttgctataccaaaattcatg s rheMac2.3 97227061 3509 - 196418989 GGCTTGGTGACTCACCTCTGTAATCCTGGTACTTTGGGAGGCCAAGACAGGTGGATCGCTTGAGCCCAGGAGTTTGAGACCAGCCGGGGCAATATAGTGAGACTTTGTCTCTACAAGAAACAATTTAAAAACTAGCCAAGCATAGTGGCATGTGACTGTAGTCCCAGTTACTGAAGAGGTTGAGGTGGAAGGACTGTTTGAGCCCAAAAGGCAGAGGTTGCAGTGAGCTGAGATCATGCCACTGCACTCCAGCCTGGGTAACAGAGCAAGACCCTGCCTCAAAAAAAAATAAAAATAAAAATAAAAAAAAGAAGCGGAAGAAAAGAAA-ATGTCTACTATTT----GTCAGAAAATCTCATTCCATAAAGTCA-TGTTTC-------TAA-TGTG-AATGATTT-TGTGTTACCTTAAATATAAAATTCAAAA-TACTTGTTTTTCATTTTTTCA-----TTTTCTGGTA--CTTTTC---------ATGTACT-TTTTAAAACACAACTCTTA----CTGGA--GTTTGCAATTCCCATTCTC-TTCTAGTAATA---TCTAT-ATTGATTTAATTTACATAGCACTTTTACATAG-TCTTTACCAA-GGAGGAA--AAAATCTAACTTTTAAATTTATTCCAAA-CCCAAATCTTGCTTTTAGAGCACTT-GAATAAAAAAAACTGCCTTA--TTTGACTATGCCATTGCTCTTTCCCAAG-------TTAATTTTATGACTATGTCTTTG-------TATTGAA-TTTGTTTACTCACATCTAACTGACCCAAATG-CCTTATCAAGTGCCCAAATCATGTCAAAGATA--AG----A---------GCTGCTAGTGATGCTATTTTG-AGAAGAAA-CAAAATGTACTAAAA--TATACCAGTTCCCAT-TATGCTAAAATG-CACCATTTCTTTGGCACATA-----------CATGT-----------------TATGTTTTACCAATAGGAGAAAGAGTGACGAGCTGACAAGGTAGTTCGTGC----------ATACAGAAT-GGTCTGACTA-TTTTGTCT--ATGG--ATTCACTGAAACCTTT-C---T-----AAA-------GTGTGGTTAGTACC-TGAAAGCATATATTTTGTTTCACAAATGGGGAATT--------------------TTACTTGCTAC----CTATAGGTAA---------TCAT-TAG----------TTCTTTCAAGGACAGGAAATGTATTTTTTTTTTCTTTTTTTTTTTTTAAATTGAGATGGAGTTTTGTTCTTTT-TGCCCAGGCTGGATTGCAATG-------GCGCA-ATCTCGGCTCACTGCAACCTCTGCCTCCTGGACTCAAGTGATTCTCCTACCTCGGCCT---------------------------CCCAAGTA-GCTGGGATTACAGG-CATGCACCACCATGCCC-------AGCTAATTTT---TATTTAGTAGAGACG----GGGTTTC----TCCACGTTGTTCAGGCTGGTCTCAAACTCC-----------------------CAACTTAAGGTGA-----------TCTGCCCGCCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAC-AGCGTTAGGCCAAGAAATGTATTTCT-TTTACCTTT-GTACACTGAGTAT----CTAGCTCATTGCCT-GCACATTGTAGGTGCTTAAGAAGTGT-----TTGTTAAAC--------CAGTGATACCACAACACAGTTGACTT-------ATTGAAAAGCCACTGCCAA-----GTTGTACCATACTGCAACAG----------------------------------------------------------------------------------------------------------------------GCACTGTGGCTAATTAGCTTAGTTTATTAATGCAAGGAAC-T-----GAGGTCAAGGACTCAATTTCCAAAACGATCTTTT--GACCTTATTCTAGTCACGATT---------TCATAGTTTGTTCTA----ACAAGCCATCTCTCCTATGACTGCAAGGAGAATTAAAC------AAGCAGA------GGGAGGAACAAATAG--TTTAACACAATTCATCACCACTCTAATACAAATAATTTAGAAATTAAACAGGTA---A--------TAAATGA------------ACTGTGCATCCTTTTGATATG----AAAAAT--TCCAATATT--------------------------------TCAGTATGTAAGATTTGG----------------------------TTATAAGAGTAAAATAAAAAGTTCTGGAGAT-----AGTGGTTGCAAAACAATGTGTA---TGACACT----------------------GAATTGTACATTTT-------------------------AAATGGTTAAATAGTAAATTTAAT---------GTTATGTGTATTTTACCACAATAAAAAATAAAGTTAAA---------TTATTAAAATGTGAAAAAAA-----------ATTATAAGTTAACACAGCTT----------------------------------------------------------------------------AAGTTAACATCCAG-----------------------------------------------------------CAACCTCACATGTAAAACAAACAGGTAAAAAATGAAAAAAAAAGAGTAAAATAATAACATTAACTG-CTG----------------ATCCTTAAAGTAATACAAACTAATATACAAACCCTGTATCATTTTATTATAACTGTAA---------------AGTTTGTCACAGAGTT---CTTATGAGGATAATCGTCTTCTTGTGATTGCTATAAAAAGTCATTTAATTCAAAACATTTGGCTAATAAAAGGAC-----------------TTCTTTTTTTTGTAC----AAGGGAATTTCAAT--------AAAATG---------TTTTGCAAAATAAAGAA----AGAAA----ATGAATAGATACAAGACATATAAT--------CTTAAAA-ATATAGCTTTTTTCCAAGGACTCTCAAATAAACTTCTGTTATG--AA---CAGAGCCTA-TATCAGTAGTTTGAACA-CAGGA------------------GAA----TTTTAATTTGTTTTCAAGA-T------TTCACTGGCTCTAAT-GTCTCAGGAAAGTAAGCCAGCTTCT---A--TCTACACATTTTCTCACTATG-TAAGTGGAAATAATGCTACTTACTGCTTCATAGGGGGTGCTATGTGAATTAATTG-GTTAATGTGCTTAAAGCACTGCCTAAGTACTAAATGTTATCACTAGTGTGCATTGTATATCTCTTTGCAATTATCTGCCACCTTAAAATGCTGTGGCTTGTAAAGGTGCCTC-TCTCTTGGAATATTTACAA-AAGGTTAAAGAAAGTTC------------------------------------------------AAGAGGA---AAAAA---AAGCC-TGTAGG-TTAAGGTAAGGTAGAAG---AAAGG-GAAATTCAAAATCTGACACG-TTTATTACATGCTTTT-TGTTACATCATAT----------TACATGCTTCTTAAAATTAT----AGATCATTATGCTAGAAGAAAAA-ATT-TAGTCACACA--CATT----TTGAA-TT-CAAAATATGCTACATAG--TTTTAAGAAA------------------TC---AA---TCTA-----CAATAGAAC----TAAGCAATTAAAGTATACATT-----------GCATTAAGATAAA--CATA-A------TTTATTTTATTGCAAT------TTAATTATTAATCATAATAGTTACATGTTTAATCTTATTAG-----TT-GAAA------------------------GAAGCTATC-TGACATCAGTGAGACCAGATCCAATAATGCATATCTTTTTTTTTTTTTCTG-----CTGTTAAAGTCTTCAAACATTTTTTGGAAGATAAATTCTTAAATGCACAGAATAAAATTTCTACTAAATTAATAAGAACAACAATAGTAGTAGTAGTAATACCTTAAGCTTACACAGTGAT-TTATAATTATACTAGGTAGCAAGAACTGTGAA-GGTCTGAGACTTTACCTTATTCG----TTTGCAAATTAGTCTCC--TAGTTTC-----TGCTGGCAGAAGACACAAGACTCCTGGATCAAAGACAGGTGACAGTTTATTGCTAATATCAATGGCAGTAGCCAGAGCATCTTCATTT-TCTTGTGGCAGTAGCCCAAGCCCCAGTTCCCACAGGGTGAC---GCAAGGGCTAGGAGGCACCTGCACACACACTGGGTTGTATTAC---AGAAGACTAACCCTGAGCTTAGAAAACCTCAATCTTTTCCCTTTGCTCCAGAGAAAGACATTCTCTCTTCCAAGACTGTTTGCTATACCAACATTCATG a score=356.4 s hg18.7 27047861 502 + 158821424 aaaaaaagtccagaataagaggctagcagtgcctctgctcacaagacatgcataaatatttgagaaccaaggagagttatgtcccaataCt--------agggtgaccatatatcctagtttgcttgtgacagtcttgaccaatactagttgtctcagcttaatt-------attaatagcacccctttccactctcgcaagtgtaccagtttggacaagaaattatatagttaccAC-AGTTATAATTCTTT--AAAAAATTACCTGCCTGGTCAGAGTACTGCTGATATCTACAGTTAGGGTTGGGTCAATCAAATAGCACAAGAGAGTAAAAGT-C--AAAAG-GGGGAAAAGCAAATCATGCATATCATTTTAATAAT--------------------ATGCATTATTATATGCAT-----AGAATAATATGCATTATTCTAAATGAAGAAGACTTCAAGCACTTATTTAGAAGAAAAGAGACTATTCCAG-GAAAAAT-AAAAGCTGGTTTGATTGTGTCTTAACCACTTAAGACAAACCACTTAA s panTro2.7 27385217 502 + 160261443 aaaaaaagtccagaataagaggctagcagtgcctctgctcacaagacatgcataaatatttgagaactaaggagagttatgtcccaataCt--------agggtgaccatatatcctagtttgcttgtgacagtcttgaccaatactagttgtctcagcttaatt-------attaatagcaccccttttcactctcgcaagtgtaccagtgtggacaagaaattatatagttaccAC-AGTTATAATTCTTT--AAAAAATTACCTGCCTGGTCAGAGTACTGCTGATATCTACAGTTAGGGTTGGGTCAATCAAATAGCACAAGAGAGTAAAAGT-C--AAAAG-GGGGAAAAGCAAATCATGCATATCATTTTAATAAT--------------------ATGCATTATTATATGCAT-----AGAATAATATGCATTATTCTAAATGAAGAAGACTTCAAGCACTTATTTAGAAGAAAAGAGACTATTCCAG-GAAAAAT-AAAAGCTGGTTTGATTGTGTCTTAACCACTTAAGACAAACCACTTAA s rheMac2.3 97230571 450 - 196418989 AAAAAAAGTCCAGAATAAGAGGCTAGCAGTGCCTCTGCTCACAAGACATGCATAAATGTTAGAGAACCAAGGAGAGTTATGTCCCAATACT--------AGAGTGACCATATATCCTAGTTTGCTTGTGACAGTCTTGACCAATACTAGTTGTCTCAG-TTAATT-------ATTAATAGCACCTCTTTTCACTCTTGCAGGTGTATCAGTTTGGACAAGAAATTATATAGTTACCAC-ACTTAAAATTCTTT--AAAAAATTACCTGCCTGGTCAGAGTACTGCTGATACCTACAGTTAGGGTTGAGTCGATCAAATAGCACAAGACAGTAAAAGT-C--AAAAG-GGGGAAAATCAGATCATGCATATCATTTTAATAAT-----------------------------------------------------------CACTAAATGAGGAAGACTTCAAGCACTTATTGAGAAGAAAATAGATTATTCCAG-GAAAAGTAAAAAGTTGGTTTGATTG------------TTAAGACA------CTAA a score=3296.4 s hg18.7 27048363 1844 + 158821424 AAATGGCAACTGAAGC-TTTGCATAACTGG-TACAGTAATTACACTATTTTGCC------TGAATACTTGTCCTTCTTTACTGAAAGAT-CTCAGGTAA--TTTTTACCCTAAGTATCCCT-GAAACTAAGAAA-----TTTTCTGAC-TTCCATTTTGAGTTGTAAAGAATATTAA--AA-CTTTACAGAATATTAAA-----------AATTACCAGGATATTTCAGCCACATCCAGACAATTTACTCCTGGCAGGTTCCCCATTCTT-CTCACCCCTCCGCACAGTTCAAGCTATTTGATT---TT-GACAGCATTCCACACCCGTCCTCATTCTCTTCCCCTACTTCCCCACCCTTGAGCTCAACTCTGACCCCTGTG-TCTACCATCAATTCTGA-CCTTAGA-CAATA-GTGATTTAATGAGTTTTCACTCAATACTATGGAACCAAGCTCAATTTATC-------------CC---------------TGGCTCAAATAGCCCA--GT-TCTATCTAGAG-CACTTTGGTCTTATTCCATAGATCATCAGTGTCCATCCAAATTTCCAATT-ACAGTAAGTAAATCCTTGATGGTCTCATTCCCTGAACTTAAATTGGTA-----------CTTCAGTCCTTG-------GGGATTG-GGACCCTCCCATACACTTGTCAGGCCCCT-CGCAGGGAAGAGAA----TCCTGCAGCAGATCATAAGTCCTGAACCAAGGG-TT------T--------GCCAACCTGACCATGCTGGTTTTCAAATATCACA------------------AGC--TTCTGGGTTC-----TCTGTACCTATGTTTTGCATGCC-TGTTGAGG---ACCAT-TATCGCCACATGGGACTTTCGAGATACACGACATTTTACTGGAATATCTTCCACCCCATATACCTACCATGGAGTGCCCATGA--GCATGGACTTTCTCTCTTAATTT-----------ACCCAGAGTCTCTCAT------GAT---AATGATCATTTC---------AAAGACCTCAGGTCAATTACAGTCTTATTCC-TTCCCATTCTGCCAGTTCTGCACCAAGTGGCCTGTTCATACTTGACTCTATTCTGAA-ATGTCACTGAGAA-TTTTTGT-ATTGCTGTTCTCCTTTCACAACTATATCT----------------------AATGAATTAATTTCATTATTCCAGCAGGTTCTCTGTATGAAAACAACAAAGTTT--AACAA------AGT-G-TCTGTGTTGCAAAATG------GTCT----CAGTATGTGATAGATTATGAGAATGCCTAGACTTTGTTTATGAGTT-------TGCAAATT-TTCAATTCATATGGGTCCTTAGGAAATTACTTAAA-TCTCAATGTAAAATAAAATAACAAAA-TTCCATAGAAAAAGT----TGTATG-TACAT-----------------------------------TATAATTGCAA---TTGTGTAAAGAA-AAA-ATCATGGGTG-TGAGCAA---AGTC--------TAAAAAGCAATCCACAAACAGCAATATATTTCATAAACAAG--------TGAATAGTTAAGTT-A--GAGTAATGTAATTTTGGAGTTGTTT--TCTTTTTTAAAAAATATCCATGTT--Gtg---agatctaattaaaataaagagcttatgcacagcaaaagaaactatcaacagagtaaacagacaacttacagaatgggagaaaatttttgcaaactatgcatctgagaaaggtctaatatctagcatctacaaggaacttaaacaaatttacaag-aa----aaaaaacccataaaaaagtgggcaaaggacatcaacagacacttttcaaaagaagacatacatgtggccaacaatcatatgaaaaaagctcaacatcactgatcattagagaaatgcaaatcaaaaccacaatgagatacccctcataccagtcagtggctattattaaaaagtcaaaaaataactgatgctggtgaggttgtggagaaaaagaaatgtttacacactgttagtgggagtgta-----aat-------------tagttcaactattgtggaagacagtgttcctcaaagacttaaagacagaaatacc s panTro2.7 27385746 1831 + 160261443 AAATGGCAACTGAAGC-TTTGCATAACTGG-TACAGTAATTACACTATTTTGCC------TGAATACTTGTCCTTCTTTACTGAAAAAT-CTCAGGTAA--TTTTTACCCTAAGTATCCCT-GAAACTAAGAAA-----TTTTCTGAC-TTCCATTTTGAGTTGTAAAGAATATTAA--AA-CTTTACAGAATATTAAA-----------AATTACCAGGATATTTCAGCCACATCCAGACAATTTACTCCTGCCAGGTTCCCCATTCTTTCTCACCCCTCCACACAGTTCAAGCTATTTGATT---TT-GACAGCATTCCACACCCGTCCTCATTCTCTTCCCCTACTTCCCCACCCTTGGGCTCAACTCTGACCCCTGTG-TCTACCATCAATTCTGA-CCTTAGA-CAATA-GTGATTTAATGAGTTTTCACTCAATACTATGGAACCAAGCTCAATTTATC-------------CC---------------TGGCTCAAATAGCCCA--GT-TCTATCTAGAG-CACTTTGGTCTTATTCCATAGGTCATCAGTGTCCATCCAAATTTCCAATT-ACAGTAAGTAAATCCTTGATGGTCTCATTCCCTGAACTTAAATTGGTA-----------CTTCAGTCCTTG-------GGGATTG-GGACCCTCCCATACACTTGTCAGGCCCCT-CGCAGGGAAGAGAA----TCCTGCAGCAGATCATAAGTCCTGAACCAAGGG-TT------T--------GCCAACCTGACCATGCTGGTTTTCAAATATCACA------------------AGC--TTCTGGGTTC-----TCTGTACCTATGTTTTGCATGCC-TGTTGAGG---ACCAT-TATCCCCACATGGGACTTTCGAGATACACGACATTTTACTGGAATATCTTCCACCCCATATACCTACCATGGAGTGCCCATGA--GCATGGACTTTCTCTCTTAATTT-----------ACCCAGAGTCTCTCAT------GAT---AATGATCATTTC---------AAAGACCTCAGGTCAATTACAGTCTTATTCC-TTCCCATTCTGCCAGTTCTGCACCAAGTGGCCTGTTCATACTTGACTCTATTCTGAA-ATGTCACTGAGAA-TTTTTGT-ATTGCTGTTCTCCTTTCACAACTATATCT----------------------AATGAATTAATTTCATTATTCCAGCAGGTTCTCTGTATGAAAACAACAAAGTTT--AACAA------AGT-G-TCTGTGTTGCAAAATG------GTCT----CAGTATGTGATAGATTATGAGAATGCCTAGACTTTGTTTATGAGTT-------TGCAAATT-TTCAATTCATATGGGTCCTTAGGAAATTACTTAAA-TCTCAATGTAAAATAAAATAACAAAA-TTCCATAGAAAAAGT----TGTATG-TATAT-----------------------------------TATAATTGCAA---TTGTGTAAAGAA-AAA-ATCATGGGTG-TGAGCAA---AGTC--------TAAAAAGCAATCCACAAACAGCAATATATTTCATAAACAAG--------TGAATAGTTAAGTT-A--GAGTAATGTAATTTTGGAGTTGTTT--TCTTTTTTAAAAAATATCCATGTT--Gtg---agatctaattaaaataaagagcttatgcacagcaaaagaaactatcaacagagtaaacagacaacttacagaatgggagaaaatttttgcaaactatgcatctgagaaaggtctaatatctagcatctacaaggaacttaaacaaatttacaagaaa----aaaaaacccataaaaaagtgggcaaaggacatcaacagacacttttcaaaagaagacatacatgtggccaacaatcatatgaaaaaagctcaacatcactgatcattagagaaatgcaaatcaaaaccacaatgagatacccctcataccagtcagtggctattattaaaaagtcaaaaaataactgatgctggtgaggttgtggagaaaaagaaatgtttacacactgttagtgggagtgta-----aat-------------tagttcaactattgtggaagacagtgttcctcaaagactt--------------- s rheMac2.3 97231021 1852 - 196418989 AACTGGCAACTGAAGC-TTTGCATAACTGG-TACAGTAATTACATTATTTTGCC------TGAATACTTGTCCTTCTTTACTGAAAAAT-CTCAGGTGATTTTTTTGCCCTGAGTATCCCT-GAAACTAAGAAA-----TTTTCTGAC-TTCCATTTTGAGTTGTAAAGAATATTTA--AA-GTAT-----------------------------CCAGGATATTTCAGCCACATCCAGACAATTTACTCCTGCCAGTTTCCCCATTCTTTCTCACCCCTCCACACAGTTCAAGCTATTTGATT---TT-GACAGCATTCCATACCCATCCTCATTCTCTACCCCTGCTTCCCCACCCTTGGGCTCAACTCTGACTCCTGTG-TCTACCATCAATTCTGA-CCTTAGA-CAATA-GTGATTTAATGAGTTTTCACTCTACACTATGGAACTAAGCTCAATTTATC-------------TC---------------TAGCTCAAATAGCCCA--GC-TCTATCTAGAG-CACTTTGGTCTTATTCCATAGGTCATCAGTGCCCATCTAAATTTCCAATT-ACAGTAAGTAAATCCTTGATGGTCTCATTCCCTGAATTTAAATTGGTA-----------CTTCAGTCCTTG-------GGGATTG-GAACCCTCCCATACTCTTGTCAGGCCCCT-CGCAGGGAAGAGAA----TCCTGCAGCAGATCATAAGTCCTGAACCAAGGG-TT------T--------GCCAACCTCACCATGCTGGTTTTCAAATATCACA------------------AGC--TTCTGGGTTC-----TCTGTACGTATGTTTTACATGCC-TATTGAGG---ACCAT-TATCCCCACATGGGACTTTCGAGATACACGACATTTTACTGGGATATCTTCCACCCCATACACATACCATGGAATGCCCATCA--GCATGGACTTTCTCTCTTAATTT-----------ACCCAGAGTCTCTCAT------GAT---AATGATCATTTC---------AAAGACCTCAGATCAATTACAGTCTTATTCC-TTCCCACTCTGCCAGTTCTGCACCAAGTGGTCCGTTCATACTTGACTCTATTCTGAA-ATGTCACTGAGAA-TTTTTGT-ATTGCTGTTCTCCTTTCACAACTATATCT----------------------AATGAATTAATTTCATTATTCCAGCAGATTCTCTGTATGAAAACAAGAAAGTTT--AACAA------AGT-G-TCTGTGTCGCAAAATG------GTCT----TAGTATGTGACAGATTATAAGAAGGCCTAGACTTTGTTTATGAGTT-------TGCAAATT-TTCAATTTATATGGGTCCTTAGGAAATTACTTAAA-TCTCAATGTAAAATAAAATTACAAAA-TTCCATGGAAAAAGT----TGTATG-TACAT-----------------------------------TATAATTGCAA---TTGTGTAAAGAA-AAA-ATCATGGGTG-TGAGCAA---AGTC--------TAAAAAACAATCCACAAACAGCAATATATTTCATAAACAAG--------TGAATAGTTAAGTT-A--GAGTAATGTAATTTTGGAGTCGTTT--TCTTTTTTAAAAAATATCCATTTT--GTG---AGATCTAATTAAAATAAAGAGCTTATGCACAGCAAAAGAAACTATCAACAGAGTAAAGAGACAACTTATAGAATGGGAGAAAATTTTTGCAAACTATGCATCTGAGAAAGGTCTAATATCTATCATCTATAAGGAACTTACACAAATTTACAAGAAAAAACAAAAACCCCATAAAAAAGTGGGCAAAGGACATGAACAGACACTTTTCAAAAGAAGACATACATGTGGCCAACAATCATATGAAAAAAGCTCAACATCACTGATCATTAAAGAAATGCAAATCAAAACCACAATGAGATACCCCTCACACCAGTCAATGGCTATTATTAAAAAGTCAAAAAATAACTGATGCTGGTGAGGTTGTGGAGAAAAAGAAATGTTTATACACTGTTAGTGGGAGTGTATTTACAATAGTAGTATAACAATAGTCCAACTATTGTAGACGACAGTGTTCCTCAAAGACTTAAAGACAGAAATACC a score=544.2 s hg18.7 27052337 1487 + 158821424 aaagacagaaataccatttgacccagcaatcccattactgggaatatacccaaagtaatacaagtcattctattacaaagacacatgtgtgtgtatgtttattgcaacactattcacaatagcaaagacatggaatcaacctaaatgctcatcagtgatagactggataaagaaaatgtggtatatatacaccatggaatactatgcagccataaaaaaaagatcatgtcctttgcagggacatggatgaagctggaggccattatccttagcaaactaacacaggaacagaaaaccaaatactgcatgttctcgcttataagttggagctaaatgatgaaaacacatggacacattgtggggaacaacacacactggggcctatcagagggtagagggtgggaggagggagaggatcaggaaaaataacttagggtaataggcttaatcacctgggtgatgaaataatctgcacaacaaacccacatgacacacatttacctatataacaaacctgcacatgtacccctgaacttaaaataaaaggaaaaaaaaTCCA-TTTTGCATTTTGAAAAGGAAAAGAAAATTATGA-TATGTATTTATCATAAGGTAATACTTTGTAAGCACACTGGGATAA--CAATGAAA-------------------------------------------------AATACTGTAGTTATCAATGCTT-CCTTTTTAATGA-----GCTCTTCCTTAATCAAATCTTGGTTTAGCTTTGTATTGATTTTAGAACATGCTCCCTTTCCTATGCACATGTGTG-TTT--TTCAAAGGCTGCAAAAGGTTAACAATTGTTATATATCATTATATACTAACAG-TTGGTCTAATGACTAAGGA---TTGAATCAGCaatctt-ggtaacttcctc-ttagctctatgaccctagcaaggcacttaac---------ctctGTTTCTCTTTCAAAAGGAAT----AACAACAATTGCTGAATTCGGAAAATATCTATAGACTATATTTATATTAAGACCTTT-CAGTG-AAA-ATGAGAAATGAATGTAAAC-------T-----CATAAAGACCCAGTTCAGATAATGTACTTCTGTAGTCTAACACATGAAttttttt----tcttttttttttttttt-gtttcttttgttttttgggtttttttttttt-----gagacagagtctcactttgtcacacaagctgaagtgcagtggtgcaatctcggctcattccaacctctgcctcccgggttcaagccattctcctgagtcagcctcctgagtagctgggactacaagcgcccgccaccatacccggctaatttttttgtatttttagtagagacagggtttcaccctgttagccaggctggtttcgaactcaagtcctcaggtgatccacctgcctcagcctctcaaagtgcttggattacaggcatgaaccaccgtgcctggtcTAATACATGAAATTTTTATTTGATAAA---AATGTGTTCTTAGATTGTAACTGAGATTACTGACTATGGAATTTAAGTTAGATTGTTATTATA-TTAAAACACTTTGg s panTro2.7 27387577 1497 + 160261443 aaagacagaaataccatttgacccagcaatcccattattgggaatatacccaaagtaatataagtcattctattacaaagacacatgtgtgtgtatgtttattgcaacactattcacaatagcaaagacatggaatcaacctaaatgctcatcagtgatagactggataaagaaaatgtggtatatatacaccatggaatactatgcagccataaaaaaaagatcatgtcctttgcagggacatggatgaagctggaggccattatccttagcaaactaacacaggaacagaaaaccaaatactgcatgttctcgcttataagttggagctaaatgatgaaaacacatggacacattgtggggaacaacacacactggggcctatcagagggtagagggtgggaggagggagaggatcaggaaaaataacttagggtaataggcttaatcacctgggtgatgaaataatctgcacaacaaacccacatgacacacatttacctatataacaaacctgcacatgtacccctgaacttaaaataaaaggaaaaaaaaTCCA-TTTTGCATTTTGAAAAGGAAAAGAAAATTATGA-TATGTATTTATCATAAGGTAATACTTTGTAAGCACACTGGGATAA--CAATGAAA-------------------------------------------------AATACTGTAGTTATCAATGCTT-CCTTTTTAATGA-----GCTCTTCCTTAATCAAATCTTGGTTTAGCTTTGTATTGATTTTAGAACATGCTCCCTTTCCTATGCACATGTGTG-TTT--TTCAAAGGCTGCAAAAGGTTAACAATTGTTATATATCATTATATACTAACAG-TTGGTCTAATGACTAAGGA---TTGaatcagcaatctt-agtaacttcctc-ttagctctatgaccctagcaaagcacttaac---------ctctgtttctctTTCAAAAGGACT----AACAACAATTGCTGAATTCGGAAAATATCTATAGACTATATTTATATTAAGAGCTTT-CAGTG-AAA-ATGAGAAATGAATGTAAAC-------T-----CATAAAGACCCAGTTCAGATAATGTACTTCTGTAGTTTAACACATGAAtttttttcttttcttttttttttttttttgtttcttttgttttttgggtttttttttttttttttgagacagagtctcactttgtcacacaagctgaagtgcagtggtgcaatctcggctcattccaacctctgcctcccgggttcaagccattctcctgagtcagcctcctgagtagctgggactacaagcgcccgccaccatacccggctaatttttttgtatttttagtagagacagggtttcaccctgttagccaggctggtttcgaactcaagtcctcaggtgatccacctgcctcagcctctcaaagtgcttggattacaggcatgaaccaccgtgcctggtcTAATACATGAAATTTTTATTTGATAAA---AATGTGTTCTTAGATTGTAACTGAGATTACTGACTATGGAATTTAAGTTAGATTGTTATTATA-TTAAAACACTTTGg s rheMac2.unknown 0 0 + 0 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=1955.4 s hg18.7 27053824 2444 + 158821424 gccgggcgtggtggctcacgcctgtaatcccagcagtttgggaagctgaggcgggtggatcacctgagatcaggagttcgagaccagcctggccaacatggtgaaaccctgactctaccaaatacaaaaaattagccggccttggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggaaaatcgcttcaccctgcgaggcagaggttgcagtaagctgagatggcgccatcgcactccatccagcctgggcaacaagagcgaaactccatctcaaaataaataaataaataaaaCTTTGCTAAATATCAGAACAACATTTTGAC--AAATTTTCAATGAAAGGCATAGTAT-GACATGTAGAAAACATATAATT---TCCATGGGCCAAAGTTAGAATTTACCATTATAGAGAAAATAATTTCTTTATAGAAATGTTAAAGTTCT--TCGGCCTCCTTGGGACTAGGTTTCCGCGGCTGCTGCGATGACCAAAATAAAGGTAGATTCGATGGGCCC-----GAGGCTCAGGAGGAGGC---------------GTGCTCCGG----------------GGAGCGC----ACCTACCAGGAGCTGCTGGTTAACCAGAACCCCATCGTGCAGCCCCTGGCTTCTCGCCGCCTCACGCGGAACCTCTACAAATGCATCAAGAAAGCCATG----------------AAGCA--------------------------------------------------------------GAAGCAGCTTCGGCGCGGGGTGAAAGAGGTTCAGAAATTTGTCAACAAAGGAGAAAAAGGGATCATGGTTTTGGCAGAAGACACACTGCCCATTGAGG-TATACTGCCATCTTCCAGTCATGTGTGAGGACCGAAATCTGGCCTATGTCTCTATCCCTCTAAGATGAAC----------------------------------------------------------------------------------------CTGGGTGCAGCCGCAGGCTCCAAGTGCCCCACCTGTGTGATAATGGTCAAGCCCCACAAGGAGTACCAGGAGGCCTACGACAAGTGCCTGGAGGA------GGT-----GCAGTCCCTACCCCTACCCCTATGA---------------GGGGC----TCCAGTAGC-ACCTGGGCACCTGCCTCTGGAAGCTACTGGGCTGACGGCGGGACGACCGGCTGTCCTCTTGCCCACCCACACTGACGGCATCTTCCTAGTTCCCCAAGGCACGCCTTCTTCCCAGGCAGCTCTTACAGCCCTTTCATGAAGGTAATGCCCGCCTTCTCTCCATCAGTGCCATTTCCCATAGAACTAAAGGGTATTCCAAGAATGGGGGGTGGGGAAAGTAAATGCTAAGACTAAAAAGAATAAaaaataaaaataaaataaaataaaatTAATGTTAAAGTTCTTCTAggccagacatggtggtatgtgcctgcattctcagctactcaggatgctgaggcaggaagatcacttgagtccaacctgagcaacatagtgaaaccccatctct--aaaaaaataagtaaatcagccaggcacagtgcctcacacctgtaatcccagcactttgggaggccagggtagaaggatagcttgaagccaggagtttgagaccaacctgggcaacatggcaagaccccatttctaaaataaaTTAATTAAATTAAATTAACTTATTCTAAA--------TAGTTTAACATATTCACCAGCTGTAATGGTAAA-TTAATAAAAATCCTGCTTTCActgggtgcggtggctcacgcctgtaatcgcagcactttgggaagctgaggcgggtgaatcacctgaggtcgggagttcgagaccagcctgaccaacagggagaaaccccgtctctactaaaaatacaaaattagccggggtggtggtgcatgcctgtaatcctagctacgcgggaggctgaggcaggagaatcgcttgaacccgggaggtggaggtcgcggtgagccgagatcacgccattgcactccagcctgggcaaaaagagtgaaactccgtctcaaaaaaaaa-----aTCCAggctgggcacggtggctcacacctgtaatcccagcactttgggaggccgaggcgggcagatcatgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccgtctctactaaaaatac--aaaaaaaaaaaaaaaatcagctaggcatggtggcacgtgcctttagtcccagctactcgggagtctaaggcaggagaatcgcttgaacccgggagacggaggttgcagtgatccgcaattgcgccactgcactccagcctgagcgacagagtgagactccgtgtc-----------aaaaaaaaaaaaaaTCCTGCTTTCTCGGAAGTTA-TTG------AAGAAATATTGCTGCAAAGATTAATTAC----CATTC-TACTGTC--T----------------GAAAAGTGTACCTTCAAGCTGTTAAATTAGTGAATGGAGATCTATTATGACTTTAACAAGAATATTACTCACCAGGGGGAT-------TACTGCT-------ATTAA-CAGTAGG--ATGTAT---CATTTAAG-ACATTAAAATTGAATGGAAATGT--TTTTCAACCATTTA-AATAAAACTC-CTTGTTCTTTACTTCACAATGAAGCTTTCTTTTGCTAGCTTCT s panTro2.7 27389074 2429 + 160261443 gccgggcgtggtggctcacgcctgtaatctcagcactttgggaagctgaggcgggtggatcacctgagatcaggagttcgagaccagcctggccaacatggtgaaaccctgactctactaaatacaaaaaattagccggccttggtggcgcatgcctgtaatcccagctactcgggaggctgaggcaggagaatcgcttcaacctgcgaggcagaggttgcagtaagctgagatggcgccatcgcactccatccagcctgggcaacaagagcgaaactccatctcaaaataaataaataaataaaaCTTTGCTAAATATCAGAACAACATTTTGAC--AAATTTTCAATGAAAGGCATAGTAT-GACATGTAGAAAACATATAATT---TCCATGGGCCAAAGTTAGAATTTACCATTATAGAGAAAATAATTTCTTTATAGAAATGTTAAAGTTCT--TCGGCCTCCTTGGGACTAGGTTTCCGCGGCTGCTGCGATGACCAAAATAAAGGTAGATTCGATGGGCCC-----GAGGCTCAGGAGGAGGC---------------GTGCTCCGG----------------GAAGCGC----ACCTACCAAGAGCTGCTGGTTAACCAGAACCCCATCGTGCAGCCCCTGGCTTCTCGCCGCCTCACGCGGAACCTCTACAAATGCATCAAGAAAGCCATG----------------AAGCA--------------------------------------------------------------GAAGCAGCTTCGGCGTGGGGTGAAAGAGGTTCAGAAATTTGTCAACAGAGGAGAAAAAGGGATCATGGTTTTGGCAGAAGACACACTGCCCATTGAGG-TATACTGCCATCTTCCAGTCATGTGTGAGGACCGAAATCTGGCCTATGTCTCTATCCCTCTAAGATGAAC----------------------------------------------------------------------------------------CCGGGTGCAGCCGCAGGCTCCAAGTGCCCCACCTGTGTGATAATGGTCAAGCCCCACGAGAAGTACCAGGAGGCCTACGACAAGTGCCTGGAGGA------GGT-----GCAGTCCCTACCCCTACCCCTATGA---------------GGGGC----TCCAATAGC-ACCTGGGCACCTGCTTCTGGAAGCTACTGGGCTGGCGGCGGGACGACCGGCTATCCTCTTGCCCACCCACACTGACGGCATCTTCCTAGTTCCCCAAGGCACGCCTTCTTCCCAGGCAGCTCTTACAGCCCTTTCATGAACGTAATGCCCGCCTTCTCTCCATCAGTGCCATTTCCCATAGAACTAAAGGGTGTTCCAAGAATGGGGGGTGGGGAAAGTAAATGCTAAGACTAAAAAGAATAAaaaataaaaataaaataaaataaaataaaTGTTAAAGTTCTTCTAggccagacatggtggtatgtgcctgcattctcagctactcaggatgctgaggcaggaagatcacttgagtccaacctgagcaacacagtgaaaccccatctct--aaaaaaataagtaaatcagccaggcacagtgcctcacacctgtaatcccagcactttgggaggccagggtagaagcatagcttgaagccaggagtttgagaccaacctgggcaacatggcaagaccccatttctaaaataaaTTAATTAAATTAAATTAACGTATTCTAAA--------TAGTTCCACATATTCACCAGCTGTAATGGTAAA-TTAATAAAAATCCTGCTTTCActgggtgcggtggctcacgcctgtaatcgcagcactttgggaagctgaggcgggtgaatcacctgaggtcgggagttcgagaccagcctgaccaacagggagaaaccccgtctctactaaaaatataaaattagccggggtggtggtgcatgcctgtaatcctagctacgcgggaggctgaggcaggagaatcgcttgaacccgggaggtggaggtcgcagtgagccgagatcacgccattgcactccagcctgggcaaaaagagtgaaactccatctcaaaaaaaaa-----aTCCAggctgggcacggtggctcacacctgtaaccccagcactttgggaggccgaggcgggcagatcatgaggtcaggagatcgagaccatcctggctaacatggtgaaaccccgtctctactaaaaatacaaaaaaaaaaaaaaaaaatcagctaggcatggtggcacgtgcctttagtcccagctacttgggagtctaaggcaggagaatcgcttgaacccgggagacggaggttgcagtgatccgcgattgcgccactgcactccagcctgagcgacagagtgagactccgtgtc-----------aaaaaaaaaaaaaaTCCTGCTTTCTCGGAAGTTA-TTG------AAGAAATATTGCTGCAAAGATTAATTAC----CATTC-TACTGTC--T----------------GAAAAGTGTACCTTCAAGCTGTTAAATTAGTGAATGGAGATCTATTATGACTTTAACAACAATATTACTCACCAGGGGGAT-------TACTGCT-------ATTAA-CAGTAGG--ATGTAT---CATTTAAG-ACATTAAAATTGAATGGAAATGT--TTTTCAACCATTTA-AATAAAACTC-CTTGTTCTTTACTTCACAATGAAGCT----------------- s rheMac2.3 97235327 2380 - 196418989 GCCAGGCGTGGTGGCTCACACCTATAATCCCAGCACTCTGGGAGGCTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCGGTCTCTACTAAATACAAAAAATTAGCCAGGCTTGGTGGGGCATGCCTGTAATCTC-----CT------GCTGAGGCAGGAGAATCGCTTGAACCTGGGAGATGCAGATTGCAGTGAGCCGAGATGGCACCATTGCACT--------CCTGGGCAACATGAATGAAACTCCATCTCAAAA-----AAATAAATAAAACTTTGCTAAATATCAGAACAACATTTTGAC--AAATTTCCAATGAGAGGCATAGGAT-GACATGTAAAAAACATATAATT---TCCATGGGCCAAAGTTAGAATTTACAATTATAGAGAAAATAATTTCTTTATAGAAATGTTAAAGTTCT--TTGGCCTCCTTGGGACTAGGTTTCCGCGGCCGCTGCGATGACCAAAATAAAGGTAGATTTGACAGGCCC-----CAGGCTCAGGCGGAGGC---------------GTGCTCTGG----------------GGAACGC----AACTACCAGGAGCTGCTGGTCAACCAGAACCCCATGGTACAGCCTCTGGCTTCTCGCTGCCTCACGCAGAAGCTCTACAAATGCATCAAAAAAGCCGTG----------------AAGC-----------------------------------------------------------------AGCAGATTCGGCGCGGAGTGAAAGAGGTTCAGAAATCTGTCAACGAAGGAGAAAAAGGGATCATGGTTTTGGCAGGAGAAACACTGCCCATTGAGG-TATACTGCCATTTTCCAGTC--GTGTGAGGACCGAAATCTGGCCTATGTCTCTATCCCTCTAAGGCGGAC----------------------------------------------------------------------------------------CTAGGTGCAGCCGCAGGCTCCAAGTGCCCCACCTGTGTGATAATGGTCAAGCCCC---------ACCAGGAGGCCT---ACAAGCGCGTGGAGGA------GGT-----TCAGTCCCTACTCCTACCACTATGA---------------GGGGC----TCCAGTAGC-ACCTGGGCACCTGCCTCTGGAAGCTACTGGGCTGGCGGCAGGACGACTGGCTGTCCACTTGCCCACCCACACTGACGGCATCTTCCCAGTTCCCCAAGGCACGCCTTCTTCCCAGGCAGCTCTTACAGCCCTTTCATGAAGGTAATGCCAGCCTTCTCTCCATCAGTGCCATTTCCTGTAGAACTAAAGCCTGTTCCAAGAATATGGGGTGGGGAAAGTAAATGCTAAGACTAAAAATA---------------AAAATAAAATAAAATAAATGTTAAAGTTCTT---GGCCAGGCATGGTGGTATGTGCCTGCATTCCCAGCTACTCAGGATGCTGAGGCAGGAGGATCACTTGAGTCCAAGCTAAGCAAGATAGTGAGGCCCCATTTCTAAAAAAAAATAAGTAAATCAGTCAGGCACAGTGCCTCACGCCTATAATCCCAGCACTTTGGGAGGCCGAGGTGGAAGGATAGCTTGAAGCCAGGAGTTTGAGACCAGCTTGGGCAACATGGCAAGACCCCATTTCAAAAATAAATTAATTAAATTAAATTAACTTATTCTACA--------TAATTCCACAGATTCACCAGCTGTAATGGTAAATTTTTTTAAAATCCTGCTCTCCCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAAGCGGGTGGATCACCTGAGGTTGGGAGTTCAAGACCAGCCTGACCAAGATGGAGAAACCCCGTCTCTACTAAAAATACAAAATTAGCCGGGGTGGTGGCACATGCCTGTAATCCTAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGACGGAGGTTGCGGTGAGCCGACATCGCACCATTGCACTCCAGCCTGAGCAAAAAGAGTGAAACTCTGTCTCAAAAAAAAAAAAATATCCAGGCCAGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAA-CCCGTCTCTACTAAAAATAC----AAAAAAAAAAAAAATTAGCTGGGCATGGTGGCACGTGCCCGTAGTCCCAGCTTCTTGGGAGTCTAAGGCAGGAGAATCGCTTGAACCCGGGAGACGGAGGTTACAGTGG-CCGAGATCGCACCACTGCACTCCAGCCTGGGTGACAGAGTGAGACTCTGCCTCAGAAAAAAAAAAAAAGAAAAAAAAATCCTGCTTTCTCAGAAGCTA-TTG------AAGAAATATTGCTGCAAAGATTAATTAC----TGTTC-TACTGTC--T----------------GAAAAGTGTACCTTCAAGCTGTTAAATTAGTGAATGGAGATCTATTATGATGTTAACAAGAATGTTACTCACCAGGGGGAT-------TACTGCT-------ATTAA-CAGTAGG--ATGTAT---CATTTAAG-ACATTAAAATTGAATGGAAATGT--TTTTCAACCATTTA-AATAAAA----CTTGTTCCTTACTTCACAATGAAGCT----------------- # synteny group 0 a score=855.2 s hg18.7 27056268 472 + 158821424 GTATTGTAGGAGTTTATGCA-AGA--T---TTTCCTGGTAGTACCATTTCAGATTACTTTTA-CATTTGTAAACCCCTATATTCCCATTTCTGTTTCATAGAGACAGAACTAGAGAGATACTAAATTGATATAATTTA-GCAAT--GTTTGCAATCTCATAGGTGAGAA----CTCTATTCTAGCTACAAA----ATTACCACC-ATTACTATAA----GCCAACTACATATCTCACGGTTAGACAAACTATTTGCATTCAAAGACCTCAGATGCTAAATCTGTTAGCTTTCTTCC--TATATGTGC--TAGATTCTATGTAGGGAACTTAATCAAATATAAAGTATATGGGTCACTACAGAAAG-----------AGGAAGAGAATGATCTCtgtgt---gtgtgtgtgtgtgtgtgtgtgtgtgtATCTATCTATCTATCTATATATAttttttttttttttttggacacagagtttcgttttgttgcccaggctggagtacagtggtgcc s panTro2.7 27391520 385 + 160261443 GTATTGTAGGAGTTTATGCA-AGA--T---TTTCCTGGTAGTACCATTTCAGATTACTTTTA-CATTTGTAAACCCCTATATTCCCATTTCTGTTTCATAGAGACAGAACTAGAGAGATATTAAATTGATATAATTTA-GCAAT--GTTTGCAATCTCATAGGTGAGAA----CTCTATTCTAGCTACAAA----ATTACCACC-ATTACTATAA----GCCAACTACATATCTCACGGTTAGACAAACTATTTGCATTCAAAGACCTCAGATGCTAAATCTGTTAGCTTTCTTCC--TATATGTGC--TAGATTCTATGTAGGGAACTTAATCAAATATAAAGTATATGGGTCACTACAGAAAG-----------AGGAAGAGAATGATCTCtgtgt---gtgtgtgtgtgtgtgtgtgtgtgtg--------------------------------------------------------------------------------------- s rheMac2.3 97237724 458 - 196418989 TTATTGTAGGAGTTTATGCA-AGA--T---TTTCCTGGTAGTACCATTTCAGATGACTTTTA-CGTTTGTAAACCCCTGTATTCCCATTTCTGTTTCATAGAGACGGAACTAGAGAGGTATTAAATTGATACAATTTA-GCAAC--GTTTGCAATCTCATAGGTGAGAA----CTCTATTCTAGCTACAAA----ATTACCCCC-ATTACTATAA----GCCAACTACATATCTCACGGTTAGACAAATTATTTGCATCGAAAGACCTCAGATGCCAAATCTGTTAGCTTTCTTCC--CATATGTGC--TAGATTCTATGTAGGGAACTTAATCAAATATAAAGTATATGGGTCACTACAGAAAG-----------AGGAAAAGAATGATCTGTGTGT---GTGTGTGTGTGTGTGTGTGTGTGTG----TGTGTGTGTGTATACATATATTTTTTT----------GACACAGAGTTTTGCTTTGTCGCCCAGGCTGGAGTACACTGGTGCC a score=-1793.4 s hg18.7 27056740 1939 + 158821424 atcttggttcactgcagcctccacctcctgggttcaagcgattctcctgcctcagcctcccaagtagctgagactacaggcatgcgccaccacacccagctaattttgtagttttagtagagacagggtttcaccatgttggtaaggctggtctcgaactcctgacctcaagtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcacctggccCTAAAATATTTTAAAATGATAAAATACTATCTC----CAAAATTcaaattagtacagatttaaatttattttaattcttaatgctggccatggtgcaaaaagttggac-acttatattcacttcatttt-gcaaagtaaatta--gtactttttggagagcaatttgtttgttttgagacagggttttgctctgtcaccaaggcaggagtgcagtggcatgatcacagctcacggcagtctcgacctccagggtacaagtgatcctcctgcttcagcctcccaagtggctgggactacaggggtgtgccaccatgcctggctaatttttttctttttttttt------------gagacagagtctcacactgtcacccaggctggagtgcaatggcacaagcttggctcactgcaacctccgcctcccgggttcaagccattctcctgcctcagcatcctgagtagctggggttacaggcatggatcaccatgcccagctaattttgtattttcagtagagatggggtttcaccatgttagccaggctagtcttgaactcccgaccccagatgatccacccacctcagcctcccaaagtgctgggatgacaggcgtgaatcaccgcagccggccaatatatatata---------------------------------------------------tttttttcttaagtagagatgaggtcttgctatgttacccaggctggtctcgaactcctgagttcgagcaactcacctccctcggcctcccaaagtgctaggattacagatgtgagccactatgcccagccaaaagcaatatggttaatatgaatcaagagccttgtgaacaatctcaccctttgacccagtactaccacttctgggagtctatccttagaaagtgacgcaaaatgctgactacccccaaaaatgtgccaaagatgttaataatagcaaaatgccagaaatgatctaa--gtccaacaaaaggaatgttaaagcaaattatggtaatgcaaagaatgaagtattttgcagctattaaaaattatgCATGCAT--TggccaggtgtggtgggtcacgcctgtaatctcagcactttggatggccgaggtgggtgggtcacttgaggccaggagttcgagaacagcctggccaacatggtaagactccagcctgggcaacagagcaagactccgtttcaaaaaaaaaaaaaaaTTATGCATGCATTtatatatatatatatatataaaa-catatatttgtgtatatatatata--aatgcatgcataattatatatatatatgttatagatatataAttttttaagagacagggtctcgctctgtcattcatgctggagtgcagtgacatgatcacagctcactgcagcctgtaactcctgggctcaaaggatcctcctgcctcagcctcccaagtagctaggtctatagctacatgccaccatgcagggcaaatttttttgtttttaatttttttgtagagacaaggtcttgctatgttgcccaggctggtcttgaactcctggattcaagcaatccttccacctctgcctcccaaagtactgggattataggcacaagccaccatacctggctTGTACAAATATTTtttaatgacaagccaaaatgcttctaatgaaatgttaagtgaaaaaggcaagatacaaaattata----tgtgctctatgatgtaaacaggaatggagggcaggaaatt--ggatttaaaaataaaaaga-----------cca s panTro2.7 27392169 1938 + 160261443 atcttggttcactgcagcctccacctcccgggttcaagcgattctcctgcctcagcctcccaagtagttgagactacaggcatgcgccaccacacccagntaattttgtagttttagtagagacagggtttcaccatgttggtaaggctggtctcgaactcctgacctcaagtgatccacctgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcacctggccCTAAAATATTTTAAAATGATAAAATACTATCTC----CAAAATTCAAATTAGTACAGATTTAAATTTATTTTAATTCTTAATGCTGGCCATGGTGCAAAAAGTTGGAC-ACTTATATTCCCTTCATTTT-GCAAAGtaaatta--gtactttttggagagcaatttgtttgttttgagacagggttttgctctgtcaccaaggcaggagtgcagtggcatgatcacagctcacggcagtctcaacctccagggtacaagtgatcctcctgcttcagcctcccaagtggctgggactacaggggtgtgccaccatgcctggctaatttttttctttttttttt-----------tgagacagagtctcacactgtcacccaggctggagtgcaatggcacaagcttggctcactgcaacctccgcctcctgggttcaagccattctcctgcctcagcatcctgagtagctggggttacaggcatggatcaccatgcccagctaattttgtattttcagtagagatggggtttcaccatgttagccaggctagtcttgaactcccaaccccagatgatccacccacctcagcctcccaaagtgctgggatgacaggcgtgaatcaccgcagccggccaatatatatata---------------------------------------------------tatttttcttaagtagagatgaggtcttgctatgttacccaggctggtctcgaactcctgagttcgagcaactcacctccctcggcctcccaaagtgctaggattacagatgtgagccactatgcccagccaaaagcaatatggttaatgtgaatcaagagccttgtgaacaatctcaccctttgacccagtactaccacttctgggagtctatccttagaaagtgacgcaaaatgctgactacccccaaaaatgtgccaaagatgttaataatagcaaaatgccagaaatgatctaaaagtccaacaaaaggaatgttaaagcaaattatggtaatgcaaagaatgaagtattttgcagctattaaaaattatgCATGCAT--Tggccaggtgtggtgggtcacgcctgtaatctcagcactttggatggccgaggtgggtgggtcacttgaggccaggagttcgagaacagcctggccaacatggtaagactccagcctgggcaacagagcaagactccgtttcaaaaaaaaaaaa---TTATGCATGCATTtatatatatatatatatataaaaacatatatttgtgtatatatatatataaatgcatgcataattatatatat----gttatagatatataAttttttaagagacagggtctcgctctgtcattcatgctggagtgcagtgacatgatcacagctcactgcagcctgtacctcctgggctcaaaggatcctcctgcctcagcctcccaagtagctaggtctatagctacatgccaccatgccgggcaaatttttttgtttttaatttttttgtagagacaaggtcttgctatgttgcccaggctggtcttgaactcctggattcaagcaatccttccacctctgcctcccaaagtactgggattataggcacaagccaccatacctggctTGTACAAATATTTtttaatgacaagccaaaatgcttctaatgaaatgttaagtgaaaaaggcaagatacaaaattata----tgtgctctatgatgtaaacAGGAATGGAGGGCAGGAAATT--GGATTTAAAAATAAAAAGA-----------CCA s rheMac2.3 97238182 1951 - 196418989 ATCTTGACTCAATGCAGCCTCCACCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCATGCGCCACCACACCCAGCTAATTTTGTAGTTTTAGTAGAGACAGGGTTTCACCATGTTGGTGAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCCACCTGCCTCGGCCTCTCAAAGTGCTGGGATTAGAGGCTTGAGCCACCGCACCTGGTCCTAAAATATTTTAAAATGATAAAATACTATCTC----CAAAATTCAAATTAGTACAGATTTAAATTTATTTTAATTCTTAATGCCGGCCAGGGTGCAATAAGTTGGAC-ACTTATATTCACTTCATTTT-GCAAAGTAAATTA--GCACTTTTTGGAGAGCAATTTGTTTGTTTTGAGACAGCGTTTTGCTCTGTCACCAAGGCAGGGGTACAGTGGCATGATCACAGCTCACAGCAGTCTCGACCTCCAGGGCACAAGTGATCCTCCTGTTTCAGCTTCCAAAGTAGCTGGGACTACAGTGGTGTGCCACCATGCCTGGCTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACACTGTTGCCCAGGCTGGAGTGCGATGGTGCAAGCTTGGCTCACTGCAACCTCCACCTACCAGGTTCAAGCCATTCTCCTGCCTCAGCATCCTGAGTAGCTGGGGTTACAGGCATGGACCACCATACCCAGCTCATTTTGTATTTTCAGTAGAGATGGGGTTTTACCATGTTAGCTAGGCTAGTATTGAACTCCTGACCCCAGATGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATGACAGGCGTGAATCACTGCAGCCAGCCTATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTTAAGTAGAGATGAGGTCTTGCTGTGTTGCCCAGGCTGGTCTCGAACTCCTGAGCTCGAGCAACTGACCTCCCTTGGCCTCCCAAAGTGCTAGGATTACAGATGTGCACCACTATGCCCAGCCAAAAGCAATATGGTTAATATGAATCAGAAGCCTTGCGAATAATCTCACCCTTTGACCCAGTACTACTACTTCTGGAAGTCTATCCTTGGAAAGTGATGCAAAATGCTGACTACTCCCAAAAATGTGCCAAAGATGTTAATAATAGCAAAATGCCAGAAATGATCTAAAAGTCCAACAAAAGGAATGTTAAAGCAAATTATGGTAATGCAAAGAATGAAGTATTTTGCAGCTATTAAAAATTATGTATGCAT--TGGTCA--CCTGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGTGGCCAAGGTGGGTGGATCACCTGAGGCCAGGAGTTCCAGAACAGCCTGGCCAACACAGTGAGACTCCAGCCTGGGCAACAGAGCAAGACTCCGTTTCAAAAAAAAAA-----TTATGCATGTATATATATA---ACATATATATAACA---------------TATATATATA-------------------ACATAT-----------ATATAACTTTTTTTAAGAGACAGGGTCTCGCTCTGTCATTCATGCTGGAGTGCAGTGACATGATCATAGCTCACTGCAGCCTCTACCTCCTGGGCTCAAAGGATCCTTCTGCCTCAGCCTCCCAAGTAGCTAAGACTATAGCCACATGACACCATGCCTGGCAAATTTTTTTGTTTTTAATTCTTTTGTAGAGACAAGGTCTTGCTATGTTGCCCAGGCTGGTCTTGAACTCCTGGCTTCAAGCAATCCTCCCACCTCAGCCTCCCAAAGTACTGGGATTATAGGCACAAGCCACCATACCTGGCTTGTACAAATGTTTTTTAATGACAAGCCAAAATGCTTATAATGAAATGTTAAGTGAAAAAGGCAGGACACAAAATTATA----TGTGCTCTATGATATAAACAGGAATGGAGGG-AGGAAAGT--GGATTTAAAAATAAAAAGA-----------CCA a score=-138.4 s hg18.7 27058679 630 + 158821424 aatagaaatgatg-----acaacaata---gtag---cttctagtttgaggagaccgtgggtgaa-ttttttctagttctt-------cacacttacttttcagtactttccaaacattttccaaacattttatatttacatttaatgagaatgtagtatttttataatgacagaa----aaTGGGTTGGGAACTGAAAGCAAATAAATTTTACTTTTTTTAGAAAATGGAA---GGCATGAAGGTATTCAGATATAAGCAAATTTTTTAAAAAGCAAA-TACCTAAAAGTGAACGTAGATTGATCTTAtttttgtttttgtttttttgagacagggtctcactctgtcactcaggctgaagtgcagtggcacaatctttgctcattgcaactgccacctcccaggctcaagcaatcctcccacctcagcctcttgagtagctggggctacagacaccctgccatcacgcctggctaattttttgtattttttgtagagatgagtttcaccatattgcacagactgTTTTGTTTTGTTTTTTAAGTATgggcacagtgactggtgcctataatcccagctactcaggaggctgagttgggatgatcctttgagccctggagttc-aagttgcagttgtcataggactttctccttagg s panTro2.7 27394107 630 + 160261443 AATAGAAATGATG-----ACAACAATA---ATAG---CTTCTAGTTTGAGGAGACCGTGGGTGAA-TTTTTTCTAGTTCTT-------CACACTTACTTTTCAGTACtttccaaacattttccaaacattttATATTTACATTTAATGAGAATGTAGTATTTTTATAATGACAGAA----AATGGGTTGGGAACTGAAAGCAAATAAGTTTTACTTTTTTTAGAAAATGGAA---GGCATGAAGGTATTCAGATATAAGCAAATTTTTTAAAAAGCAAA-TACCTAAAAGTGAATGTAGATTGATCTTAtttttgtttttgtttttttgagacagggtctcactctgtcactcaggctgaagtgcagtggcacaatctttgctcattgcaactgccacctcccaggctcaagcaatcctcccacctcagcctcttgagtagctggggctacagacaccctgccatcacgcctggctaattttttgtattttttgtagagatgagtttcaccatattgcacagactgTTTTGTTTTGTTTTTTAAGTATgggcacagtgactggtgcctataatcccagctactcaggaggctgagttgggatgatcctttgagccctggagttc-aagttgcagttgtcataggactttctccttagg s rheMac2.3 97240451 608 - 196418989 AATAGAAATGATG-----ATAACAATA---ATAG---TTTCTAGTTTGAGGAGGCCATGGGTGAATTTTTTTCCAGTTCTT-------CACACTTACTTTTCAGTACTTTCCAAACATTTTA---------------------TAATGAGAATGTAGTATTTTTATAATGATAGAA----AATGGGTTGGGAACTGAAAGCAAATAAATTTTACTTTTTTTAAAAAATGAAA---GGCATGAATGTATTCAGATATAATCAATTTTTTTAAAAAGCAAA-TACTTAAAAGTGAATATAGATTAATCTTATTCTTGTTTTTGTTTTTTTGAGACAGGGTCTCACTCTGTCACTCAGGCTGAAGTGCAGTGGCACAATCTTGGCTCATTGCAACTGCCACCTCCAAGGCTCAAGCGATCCTCCCACCTCAACCTCTTGAGTAGCTGGGGCTATAGACACCCTGCCACCGTGCCTAGCTAATTTTTTGTGTTTTTTGTAGAGACGGGTTTTACCATGTTGCCCAGACTGTTTTGTTTTGTTTTTTAAGTTTGGGCACAGTGACTGGTGCCTATAATCCCAGCTATTCAGGAGGCTGAGGTGGGATGATCCCTTGAGCCCTGGAGTTCAAAGTTGCAGTTGTCATAGGACTTTCTCCTT--- a score=2629.0 s hg18.7 27059309 1830 + 158821424 gttcttgtcacacaaccaggaaagattaggttctcagacactttgaagggtgagaaaggcaggatttattgggtgaaaaggaaaaaaaaa---ggaaacagggactctcagaaaagcaagagtcctgctggctggcttcctgcctcacagactgaatcccaggttaccacacaggaatagcagaggccagactcctcccccatgcaaagggcacgaacatcccagggctctaccccattctctgggtgcacaggccagtcaaaagttctccgtggaccactttatacttggctgtctcacagtgagctatgatcatgtcactgcactctggcctgagcggcaaagcaagaccctgtctccaaacaaacaaacaaaaaTATTCTCAGTAAGCTGGTACTACTGTTA-C-AATTTT-------TTTTTAATTGGACT------GAGACCTAGGTCC-ATTTGCAATTTCTTGCTTTTAATTGCTATAGCTTTCAATAAAAGAATAATGAGC---TAAGTCAC---TTGTGTCCAA-TGTAACAATCAATAGAAACATGCAGCCTGTAAATCAAAGCACAACCGGGA--------------AACATTTAAACACATGGATCATTTCCCTAAGAAG-TTACC-----TTTTTAAATCAACTTTTTAATGGCAAAGTGTTGGA----AAAAGAAAAGATTATTGTACTTAGGGGAAAGAATGGAATAGATGAAAAAT--------ATC-AAAACTGCTTACAAATTTAC---CAGTCA----GTTCACATTCAAG----TACAAGAAT--------AAAAATTTAATTGGAAAATC--TCTGTACTTACTAAAAATTATCTATATAA----------------AATGAGCTAAT--------AGCAGAAACACAACCATTTGTAATCAAAATTCGTATTTCCATTGAATGTGGCTGTTTTATTTAC-------AGCAACACAGAGACAGATATAGAGAAGAATCCAATCTTCATGCTTTGGTAATGG-TATCT-ACCTGGTCAAAGTGCTGGGAATCAGTGTCCAAGCTCTCTGGATATACTTAC--------AATGAACATTCATTCATTTATTCACTGACCATTTCTATAAACCTTTATTGAATAGCTACTGCTACCTATCCAATATCATGTGAGTCTAAAACAACTAGAA-TATCAGTTTCAAAATATTTTGTGGGCACTACCTATGTATTTAGCACTCTGCTAAATATGGTAGCAATTACTATAGAGGAATG-TGGAGAGGCAACTATCACTTCTATACAATCAGCATTTAAAATAGAA---TTTTAGAACTGAAGA-AATATTAAAGCAGTGAGTCCTTACTTTTTT-G-AGTTAAC-A-CTGTTTAA----GTGGAATGATAA--TTCTGTTAGATGGTATCTGTTTTCGTTAGTGGCCTT---AC-TTA-GGAAAATAAAATATTTGCAAACATATATGAGTTTCCTAA----CTTTATTT--------------TACAATA-TTACAAGTACA----TGAAATCCAAAAGTTTAGAA--ACTATTG----------TCCTAAAG-----------GCCATAGAGAGAAAAGTATACATTTAATTCTATAGGCAGTTGAAATGGTCTCTGAGTA-TGGAA---TAAGACTGGAGTAGTACAATGTA------ATAATAGATTAGATGGTC-TTATTTGTTGACATCTTC-TTAATTGACTTT-AGAAAAGGtaa--tttagtaaaatatttttttaaaagtttt-aatataaaaaGAA--GAAAC---TTggctgggcgtggtgtctcatgcctgtaatcccagcactttgggaagctgagatgagcggatcaattgagctcaggagttcaagaccaacctgggcaacatggcaaaaacaaaaaaattagcctgatgtggtggtgcaagcctatagtcccagctactcaggaggctgaggtgggagaacccattgagcccaggaggtgtggtcgcaccactgctctccagcctgggt s panTro2.7 27394737 1830 + 160261443 gttcttgtcacacaaccaggaaagattaggttctcagacactttgaagggtgagaaaggcaggatttattgggtgaaaaggaaaaaaaaa---ggaaacagggactctcagaaaagcaagagtcctgctggctggcttcctgcctcacagactgaatcccaggttaccacccaggaatagcagaggccaggctcctcccccatgcaaagggcacgaacatcccagggctctaccccattctctgggtgcacaggccagtcaaaagttctccgtggaccactttatacttggctgtctcacagtgagctatgatcatgccactgcactctggcctgagcgacaaagcaagaccctgtctccaaacaaacaaacaaaaaTATTCTCAGTAAGCTGGTACTACTGTTA-C-AATTTT-------TTTTTAATTGGACT------GAGACCTAGGTCC-ATTTGCAATTTCTTGCTTTTAATTGCTATAGCTTTCAATAAAAGAATAATGAGC---TAAGTCAC---TTGTGTCCAA-TGTAACAATCAATAAAAACATGCAGCCTGTAAATCAAAGCACAACCGGGA--------------AACATTTAAGCACATGGATCATTTCCCTAAGAAG-TTACC-----TTTTTAAATCAACTTTTTAATGGCAAAGTGTTGGA----AAAAGAAAAGATTATTGTACTTAGGGGAAAGAATGGAATAGATGAAAAAT--------ATC-AAAACTGCTTACAAATTTAC---CAGTCA----GTTCACATTCAAG----TACAAGAAT--------AAAAATTTAATTGGAAAATC--TCTGTACTTACTAAAAATTATCTATATAA----------------AATGAGCTAAT--------AGCAGAAACACAATCATTTGTAATCAAAATTCGTATTTCCATTGAATGTGGCTGTTTTATTTAC-------AGCAACACAGAGACAGATATAGAGAAGAATCCAATCTTCATGCTTTGGTAATGG-TATCT-ACCTGGTCAAAGTGCTGGGAATCAGTGTCCAAGCTCTCTGGATATACTTAC--------AATGAACATTCATTCATTTATTCACTGACCATTTCTATAAACCTTTATTGAATAGCTACTGCTACCTATCCAATATCATGTGAGTCTAAAACAACTAGAA-TATCAGTTTCAAAATATTTTGTGGGCACCACCTATGTATTTAGCACTCTGCTAAATATGGTAGCAATTACTATAGAGGAATG-TGGAGAGGCAACTATCACTTCTATACAATCAGCATTTAAAATAGAA---TTTTAGAACTGAAGA-AATATTAAAGCGGTGAGTCCTTACTTTTTT-G-AGTTAAC-A-CTGTTTAA----GTGGAATGATAA--TTCTGTTAGATGGTATTTGTTTTCGTTAGTGGCCTT---AC-TTA-GGAAAATAAAATATTTGCAAACATATATGAGTTTCCTAA----CTTTATTT--------------TAAAATA-TTACAAGTACA----TGAAATCCAAAAGTTTAGAA--ACTATTG----------TCCTAAAG-----------GCCATAGAGAGAAAAGTATACATTTAATTCTACAGGCAGTTGAAATGGTCTCTGAGTA-TGGAA---TAAGACTGGAGTAGTACAATGTA------ATAATAGATTAGATGGTCGTTATTTGTTGACATCTTC-TTAATTGACTTT-AGAAAAGGtaa--tttagtaaaat-ttttttttaaagtttt-aatataaaaaGAA--GAAAC---TTggctgggcatggtgtctcatgcctgtaatcccagcactttgggaagctgagatgagcggatcaattgagctcaggagttcaagaccaacctgggcaacatggcaaaaacaaaaaaattagcctgatgtggtggtgcaagcctgtagtcccagctactcaggaggctgaggtgggagaatccattgagcccaggaggtgtggtcgcaccactgctctccagcctgggt s rheMac2.3 97241527 1443 - 196418989 GTTCTTGTCACACAACCAGGAAAGATTAGGTTCTCAGACACTTTGAAGGGTGAGAAAGGCAGGATTTATTGGTTGAAAAGGAAAAAAAAAAAGGGAAATAGGGACTCTCAGAAAAGCAAGAGTCCTGCTAGCTGGCTTCCTGCCTCACAGACTGAATCTCAAGTTACCACCCAGGAATAGGAGAGGCCAGGCTCCTCCCCCATGCAAAGGGCACGAACATCCCAGGGCTCTACCCCGTTCTCCAGGTGCACAGGCCAGTCAAAGATTCTCCGTGGACCCCTTTACACTTGGCTGTCTCAGAGTGAGCTATGATCATGCCAGTGCACTCTGGCCTGAGCAACAAAGCAAGACCCTGTCTCCAAACAAACAAACAAAAATACTCTCAGTAAACTGGTACTACTGTCA-CTTTTTTT-------TTTTTAATTGGACT------GAGACCTAGGTCC-ATTTGTAGTTTCTTGCTTTTAATTGCTATAACTTTCAATACAAGAATAATGAGC---TAAGTCAC---TTGTGTCCAA-TGTAACAATCAATAGAAACATGCAGCCTGTAAATCAAAGCACAATTGGGA--------------AACATTTAAACACATGGATCATTTCCCTAAGAAG-TTACC-----TTTTTAAATCAACTTAGTAATGGCAAAGTGTTGGA----AAAAGAAAAGATTATTGTACTTAGGAGAAAGAATGGAATAGATGAAAAAT--------ATC-AAAACTGCTTACAAATTTAC---TGATCA----GTTCACATTCAAA----TACAAGAAT--------AAAAATTAAATTGGAAAATCTTTTTGCACTTACTAAAAATTATCTATATAA----------------AATGAGCTAAT--------AGCAGAA--ACAACCATTTGTAATCAAAATTCATATTTCCATTGAATGTGGCTGTTTTATTTAC-------AGCAACACAGAGACAGATATAGAGAAGAATCCAGTCTTCATGCTTTGGTGATGA-TATCT-ACCTGCTCAAAGTGCTGGGAATCAGTGTCCAAGCTCTCTAGATATACTTAG--------AATGAACATTCATTCATTTATTCACTGACCATTTCTATAAAGCTTTATTGAATAGCTACTGCTACCTATCCAATATCATGTGAGTCTAAAACAACTAGAA-TATCAGCTTCAAAATATTTTGTGGGCACCACCTATGTATTTAGCACTGTGCTAAATATGGTGGCAATTATTATAGGGGAATG-TGGAGAGTCAACTATCACTTCTATACAATCAGCATTTAAAATAGAA---TTTTAGAACTAAAGA-AATATTAAAGCAGTGAGTCCTTACTTTTTT-G-AGTTAAT-A-CTTTTTAA----GTGGAATGATAA--TTCTGTTAGATAGTATTTGTTTTCCTTAGTGGCCTT---AC-TTA-GGAAAATAAAATATTTGCAAACATATATGAGTTTCCTAA----CTTTATTT--------------TAAAATT-TTACAAGCACA----TGAAATCCAAAAGTTTAGAA--ACTATTG----------TCCTAAAG-----------GTCATGGAGAGAAAAGTGTACATTTAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- # synteny group 0 a score=363.2 s hg18.7 27061139 2476 + 158821424 gacagaacgagaccctgtcttggaaaaagcaaaaaata-aaaaTAAGTAGGATAAACTATTGCATAGGAGAAACTATTGAA--------TAGAGTGATTTAATAGAGAAAATATGAAATACAAACAGAATGAGCAGGATATAAGTTTAAATGGTCCAAACTATTCC--CAA----------------ACACATACACATACCTATATAACACAGAGATTGTAAAACTAATAAGGTTA------GTG--------TGTTTGTACTGAACTGAGAT-ATCAGAATCAACTCA--ATACATTAAGTATATTCTGTTAAATTCTATTGT---CAAAATCTAAGGTTAAAAAGTCAttctctttttttttttt-----------tttttttttttgagacagtctcactctgtcctccaggctggagtacagtggtgctatctcgactt---------------actgcaacctctgctttctgggttcaagtaattcttgtgcctcagcctcctgcaacagctgggactacaggcaccctccaccaagccgggctaatttttgtatttttagtaaagatggggtttcaccatgttggccaggctggtctcgaactcctggactcaagcatctgcctcagcctcacaaagtgctgggattacagccatgagccaccgcacccagccTAAAGAGTCATTCTTGAAGTGTTGCCTCtaa------------attt------tca-----ttaatata----gttat--------ttaatattttattGAtt---tatttttagagacaggatctcactctgtcacccaggctggaatgcagtggtgtgatcatagctcactgcagcctggaactcctgggtttaagagatcttcttgtcccagtctccacagtagctgagactacaggtacacaccaccatgcccggctaa------------ttttttttttttgaaagacagggtctcactttgctgtccaggctggtcttgagctcctggcatcaaacaatcctcccaccccgggcctcccaaaaagtgttgggattataggcatgagccaccacAACCATCCCCACCTCTGTGATTATCTTTTGAATA---Ctttttttttt----gagacggagtttcactcttgttgcccaggctagagtgcaatggcgcaatctcggctcaccgcaacctctgcctcccgggttcaagcgattctcctaactcagcctcctgagtagctgggattacagggatgcaccaccacgcccggctaattttgtatttttagtagaggcggggtttctccaagtgggtcaggctggtctcaaactcctgacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcgcctgg-ACTTGAATACATTTTTATAA--ACATTAACTTGTAG-ACGTT------GCATGTGCTGTCTGGTTCCAGCCTTGATCTTCAAATAAACTTTTCAGGGTGCTGCATTTGTGGTTCCTTGAGTGAACCTGTCTGGAAACTAC---CATCTGCCC-CTGGAATCAAGCTTTTGTCCTcagca---gttagcaacttcgatggcattaccatc-ccc-atgcagcttcttaaacatacggaggcctgaccccagcccgactcaattaaaatcagaaattttggtgatggcacc--------cagaaatgta------tagttcctaactttctctactt--tgcagccaaaactgagaactactg--ATAATAGGTAGAAAT---CAGT----TATTTCCAAATTTATCACATTGACTTGACATTATTTCTCTGTATT----ATTTCTCTG-TA----------TTTCTGGTAA--------ACCATAGCAGGTACCCAATAATTTCATTAAAAATAAAAACCCAGgccaagcaagttggctcaca------cctgtaatcccagcactttgggaggattgcttgagcctgggaagtcgagggtgcaatgagctgtaatcgcgccaccgcacttcagcctgggtgacagagcaagatcctgtctcaaaaaaataaaacaataaaagccgggtgaggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcacctgatgtcaggagttcaagaccagccgggccaacatgacaaaactccatctctactaaaaatacaaaaattagccaggcatggtagcaggagcctgtaatcccagctacttgggaggctgaggcagaagaatcacttgaacctgggaagcagaggatgcagtgagctgagatcgcgccattgcactccagcctgggcaacaagagtgaatctccaactcaaaaaacataaataaataaataaaaTAACAAAATaaaataaaaatccaaactccataccatggcct-aatggcccactgtgatctttccccagcctgtccaccttatacctccccactgccccctgagtgtcttgcaaacatgccaaatttattcctacctctaggcctttgcatttatcatcccctctacaagaaaca--cttctcccagtcctttatttctctggctc-------ttttttttttttttttttgagacagagtctggctctgtcacccaggctggggtgcagtggcatgatctcagctca s panTro2.7 27396567 2481 + 160261443 gacagaacgagaccctgtctcggaaaaagcaaaaaata-aaaaTAAGTAGGATAAACTATTGCATAGGAGAAACTATTGAA--------TAGAGTGATTTAATAGAGAAAATATGAAATACAAACAGAATGAGCAGGATATAAGTTTAAATGGTCCAAACTATTCC--CAA----------------ACACATACACATACCTATATAACACAGAGATTGTAAAACTAATAAGGTTA------GTG--------TGTTTGTACTGAACTGAGAT-ATCAGAATCAACTCA--ATACATTAAGTATATTCTGTTAAATTCTATTGT---CAAAATCTAAGGTTAAAAAGTCAttc-----ttttttttt-----------tttttttttttgagacagtctcactctgtcctccaggctggagtacagtggtgctatctcgactt---------------actgcaacctctgctttctgggttcaagtaattcttgtgcctcagcctcctgcaacagctgggactacaggcaccctccaccaagccgggctaatttttgtatttttagtagagatggggtttcaccatgttggccaggctggcctcgaactcctggactcaagcatctgcctcagcctcacaaagtgctgggattacagccatgagccaccgcacccagccTAAAGAGTCATTCTTGAAGTGTTGCCTCtaa------------attt------tca-----ttaatata----gttat--------ttaatattttattGAtt---tatttttagagacaggatctcactctgtcacccaggctggaatgcagtggtgtgatcatagctcactgcagcctagaactcctgggtttaagagatcttcttgtcccagtctccacagtagctgagactacaggtacacaccaccatgcccggctaa-------------tttttttttttgaaagacagggtctcactttgctgtccaggctggtcttgagctcctggcatcaaacaatcctcccaccccgggcctcccaaaaagtgttgggattataggcatgagccaccacAACCATCCCCACCTCTGTGATTATCTTTTGAATA---Ctttttttttttttggagacggagtttcactcttgttgcccaggctagaatgcaatggcgcaatctcggctcaccgcaacctctgcctcccgggttcaagcgattctcctaactcagcctcctgagtagctgggattacggggatgcaccaccacgcccggctaattttgtatttttagtagaggcggggtttctccaagttggtcaggctggtctcgaactcctgacctcaggtgatccacccgcctcagcctcccaaagtgctgggattacaggcatgagccaccgcgcctgg-ACTTGAATACATTTTTATAA--ACATTAACTTGTAG-ACATT------GCATGTGCTGTCTGGTTCCAGCCTTGATCTTCAAATAAACTTTTCAGGGTGCTGCATTTGCGGTTCCTTGAGTGAACCTGTCTGGAAACTAC---CATCTGCCC-CTGGAATCAAGCTTTTGTCCTcagca---gttagcaacttcgatggcattaccatc-ccc-atgcagcttcttaaacatacggaggcctgaccccagcccgactcaattaaaatcagacattttggtgatggcacc--------cagaaatgta------tagttcctaactttctctactt--tgcagccgaaactgagaactactg--ATAATAGGTAGAAAT---CAGT----TATTTCCAAATTTATCACATTGACTTGACATTATTTCTCTGTATT----ATTTCTCTG-TA----------TTTCTGGTAA--------ACCATAGCAGGTACCCAATAATTTCATTaaaaataaaaacccaggccaagcaagttggctcaca------cctgtaatcccagcactttcggaggattgcttgagcctgggaagtcgagggtgcaatgagctgtaatcgcgccactgcacttcagcctgggtgacagagcaagaccctgtctcaaaaaaataaaacaataaaagccgggtgcggtggctcacgcctgtaatcccagcactttgggaggctgaggcaggcggatcacctgatgtcaggagttcaagaccagccgggccaacatgacaaaactccatctctactaaaaatacaaaaattagccaggcatggtagcaggagcctgtaatcccagctacttgggaggctgaggcagaagaatcacttgaacctgggaagcagaggatgcagtgagctgagatcgcgccattgcactccagcctgggcagcaagagtgaatctccaactcaaaaaacataaataaataaataaaaTAACAAAATAAAATAAAAATCCAAACTCCATACCAtggcct-aatggcctactgtgatctttccccagcctgtccaccttatacctccccactgccccctgagtatcttgcaaacatgccaaatttattcctacctctaggcctttgcatttatcatcccctctacaagaaaca--cttctcccagtcctttatttctctggctctttttttttttttttttttttttttgagacagagtctggctctgtcacccaggctggggtgcagtggcatgatctcagctca s rheMac2.3 97243248 1610 - 196418989 GACAGAACAAGACCCTGTCTCAGAAAAAGCAAACAATA-AAAATAAG-----------------TAGGAGAAACTATTGCA--------TACAGTGATTTAATACAGAAAATATGAAATACAAACAGAAGGAGCAGGATATAAGTTTAAATGGTCCAAACTATTCC--CAA----------------ACACATACACATACCTGTATAACACAGAGATTGTATAACTAATAAGGTTA------GTG--------TGTTTGTACTGCACTGAGATAATCAGAACCAACTCA--ATACATTAAGTATATTCTGTTAAATTCTATTGT---CAAAATCTAAGG-TAAAAAGTCATTC----TTTTTTTTTT-----------TTTTTTTTTTTGAGACAGTCTTACT------------CTGGAGTATAGTGGTGCTATCTCGACTC---------------ACTACAACCTCTGCTTTCTGGGTTCAAGCAATTCTCATGCCTCAGCCTCCTGCAGCAGCTGGGACTACAGGCACCCTCTACCAAGCCCAGATAATTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCGAACTCCTGGACTCAAGTATCTGCCTCAACCTCACAAAGTGCTGGGATTACAGCTGTGAGCCACCATGCCCAGCCTAAGGAGTCATTCTTGGAGTGTTGCCTCTAA------------ATTT------TCA-----TTAATATATATTGTTAT--------TTAATATTTTGTTGATT---TATTTTTAGAGACAGGATCTCACTCTGTCACCCAGGCTGGAATGCAGTGGCGTGATCATAGCTCACTGCAGCCTGGAACTCCTGGGTTTAAGAGATCTTCTTGTCCCAGTCTCCACAGTAGCTGAGACTACAGAGGCATGCCACCATGCCCGGCTAATTTTTTTTTTTTTTTTTTTTTTTTGAAAGACAGGGTCTCACTTTGCTGCCCAGGCTGGTCTTGAGCTCCTGAAATCAAACAATCCTCCCACCCGGGGCCTCCCAAAAAGTGTTGGGATTACAGGCATGAGCCACCGCACCCAGCCCCACCTCTGTGATTATCTTTTGAATATACCTTTTTTTTTTTTTTGAGACGGAGTTTTACTCTTGTTGCCCAGGCTGGAGTGCAATGGCAGGATCTCGGCTCACCGAAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTATCTGGGATTACAGGGATGCACCACCACACCTGGTTAATTTTGTATTTTTAGTAGAGGCGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCACTTCAGCCTCCCAAAGTGCTGGGATTACAAGCGTGAGCCACTGTGCCTGG-CCTTGAACACATTTTTATAA--ACATTAACTTGTGG-ACGTT------GCATGTGCTATCTGGTTCCAGCCTTGATCTTCAGATAAACTTTTCAGGGTGCTGCATTTGTGGTTCCTTGAGTGAACCTGTGTGGAAACTAC---CATCTGCCCACTGGAATCAAGCCTTTGTCCTCAGCA---GTTAGCAACTTTGATGGCATTACCATCACCT-GTACAGCTTCTTAAACATGTGGAGGCCTGAACCCAGCCCGACTCAATTAAAATCAGAAATTTTGGAGATGGCACC--------CAGATATGTA------TGGTTCCTAACTTTCTCTACTT--CGCAGCCGAAACTGAGAACTACTG--ATAATAGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=-572.4 s hg18.7 27063615 4551 + 158821424 ctgcaacctccacctcccgggttcaagctattttcctgcctcagcatcctgagtagctgggattacaggtgcctgccaccatgcccagctaatttttgta-ttttagtagagacagggtttcactgtgttggccaggctggtcttgaactcctgacctcatgatccgcctgcctcggcctcccaaagtgctgggattacaagcatgagccactgtgcccgccctctctggctcattttcatcacagaagtctttactctgtacttagaaaagtcctttcctgaccagcctatgtaaaaataaccactccctttatggtctctctcacctcctactgtcttatttccttcatggaacttacctctaccagatattaactttcttatttattatctacttatttattgtctgttcccaaccacctccacactagattgcaaattctaagagagtcagaacGGAGAATCATTGATAAAATGTGGAAATCAC-tttttttttttttctgagacagggcttgctctgtcacacaggcccgagtacagtggtgcaatcatggctcactgcagccttgatctccaggtctcaagtaatcctctcacctcagcctcccaggtagctgagactacaggcacgtgccaccatgtccagttaatttttaaattttttgtatcaatgttgcccaggctggtcttgaactcctgggctccagcaatcctctcatctcagcctcccaagtagctgggaccacaggcatgcaccaccacacctggctAATTT---ttgttgttgttgttgttattgttgttgttttggtagagatgagtttttgccatgttgcccaagatgttctcaaactcctgagctcaagtgatcctccctcctggcccttccaaagtgctaggattgcagatgtgaatgaccacacagggcCTCAGTAA---TTATTTCTGAATTAATG-TGAATAAGCATTT----------------AAATGAATGAAT----------------------------GATAGACTA-CTGAAAAGTTCAAGAACACCCTGAC--CTT----TTAGTAACATATGTATGATATTACTCTCTGATCACCCTATTTCTCTTTGAATATGTGCCAATAAATGTTCTGTGCCATTTGTTAAAGTCAA----TGTC--GATTTTACATCATCTACCAAGAT-------------------CAACTTATGTTTCCCAAA-GTCAACAAtttcttttttttgagatggagtctcattctgtcacccaggctggagtgcagtggcgtgttctcggctcactgcaagcttcgcctcctgggttcacgtcattctcctgtctcagcctcccgagtaggtgggactacagctgcctgccaccatgcccagctaata-----tatatatatatatttgtatttttagtagagacagggtttccctgtgttagccgggatggtctcgatctcctgaccttatgatccacctgccttggcctcccaaagtgctgggattacaagtgtgaaccactgtgcccagccAAGGTCAACAATTTCTAAAGGTACTAAAGAACAAGTCTCAATAATTTTCAGCAAGATAT-GAAAATCACATGCTATCCTGCTGAAAATTATTGGGACTTGGATGTTGATAAAGTATGAAGATTATTCATTCTGCTGTATTATATTTAATAAAGTTACTGACATCTTTTTAGTTTAACCTTTATTTCATTAGATTAGAA--ATAGaaata---atc-tttatt---taaattcatatattaa---atatatg--tttatatattaaaaC------GAGTTAAATTAGTA--TATCATATT---TTCATTTCCTTTCAATATATGCTAGAAAGTTTCAATTTTTTT--AT---CTTAAAAG-------------------GTCAACAGTCCTTACAGAAGGAT--CAATTTCTAATTCTATATATAATGAAATTTAGTGTGGAAA------AGAC----TTAAAATACAGAAATTCACTTTATAGAGAATATT---TAAAGAATCCATCTATTCCGT-AAAGTAAGCTTCAGC-TAACGGCTCATGTAAGAAACAGGATAAG-AAAAGTATCAAACAAGA-------TGGAG------TAAATGTAT--TATCATGTGGTATCTATTACTGCCT----------ACTACTC-ATACCATAACATTTAACTGACTT-TTTTG-AGTGGCTTGCATTATATTTAGATACTCTTCGATCACACACATCAACCCTGATAAAATga--------ttatagagaa----ctttgcaaatca--tgt-aatagaa--ttcaa----------a------tctt----aagagcaatgcaatgccattgaacaag----cattctaaaac---gagaaac--tattagatttggtattttagaaatttcactctgcaggatggagaatggag----------------tgaaagatatcagggctcaagac------------------------------------------agggagtcgcaaatgagagctagctacccacctaaagtagaatagtggcaatgaacgtgagaaaaagcaagcagattctagaaagacttaa-gaggtaaaac----AGAAATTAATTAGCACTGTTTATTATATCTTGTCCCCTTCTACTTATACTTTTTGTGCATTTTACATAT-AGGGAGGGGATTCAAA---------GTTTACAAACT-AAAGCTAGTTCACATTAAATACTGGTGGAAATAA-----T---------ATCTTGTT-TCTATTCATTTCAAAATCTTAGGGGATTTATGGAAGCAAAGCTTTCA-----ACAGATTCACAGAATACTGATTAGATGTAGC-----------------------------------------------------------------------ATCA------------------------------------------------------------------------AACTATTTA-CCATGTAtgccaagaacaatcaccgaggaaaggacagtgtcttcaataaatggtgctgggaaaactggatgttcacacgcaaaagaatgaaactagactttcacgtctcaccttatacaaaactcaactcaaaatgg----------------ctta-----aagacccaaagcataaaattgctagaagaaaacataagggacacacttcaggacattggtctgggaaaagattttatgaatat------gactttaaaaacacaggcaacaaaagcaaaaataaacagatgagattatatcaaactaaaaagctcctgtacagcaaaagaaacaaccaagagagtgaaaagacaacctacagaatgggggaaaatatttgccaactattcatcctgcagggagattaatagccagaatatgcaggaaaatcaaacatctcaacagaaaaacaaaataaaacaaagaatccaatttaaagatgggcaaacaatctgaatagacatttctcaaaagaagatatacaaatggttaacaaatacatgaaaaaaatgcccaacgtcactaatcatcaatgaaatgaagatcaaaactacaatgaaatattatctcaccccagttaggatggctgttatcaaaaagacaaaaaataacaaatgcaggtgagaatgcagagaaaaaggaactcatacattgttggtggaaatgtaaactagtacagctactatggagaacagtatggaggttcctcaaaaaattaccagtagaacgaccaagtgatccagcaattccactactgggcgtttatccaaaggaaaggaaatcagtatattgaagagatatctacactccatgtttactgcagcactattcaaaattgccaagatatagaatcaacctaaatgtccaacaacagatgaatggataaggaaaatatggaatcccgtcattcacagcaacatgaatggaactgaaggaaaattacgttaagtgaaatcagccagaaacagaaagttaaacaccacattttctcactcatatgtagaaaagctttaaaaaaaaaaaaaaaagatctcctagaaataataagtagaacagaggttactggagactggaaagagcatggggaagaaaaggataaggagagactccttaaaggctacaaaattacagctagataggagg-ataagttctagtgttctatagcaccttaagatgactataattcgcaatcgtatgtattttcaaatagctagaagagaagatgtgaaatgtcccaacaagaagaaataataaatgtttgatatgatggaatgctaattgccctgatctgatcactatacattgtatgtactgaaacatcacatacaccccataaatatgtacaattaccatgtgtaaatttaaataaaTAAAAGAATATTCACCATGTAATTTCTTTTTATTACTTTTTTTGTCtttttgtttctttgttggttttttttttttttttttggttttgtttacttttgtttgagatggagtctcctctatcgcccaggctggagtgcagcagcatgatcttggctcactgcagaactccacctcccaggttcaagtagttctcctgcctcagcctcctgag-tagctggggttacaagcgtgcaccaccatgcctggctaatttttatatttttactagagatggggtttcaccagtttggtcaggctggtctcgaactcctgacctcaagtgatccacccacctcagcctcccaaagtgctggtaggcgtgagccactaagcccagcccattttttaacatttagggacagggtctcgctctgtcacccagtgcagtggcataatcatagcacactgcagcctcaaactcaagggatgctcccacctcagcctcccaagtggctctgactacaggcatgtgctaccatgcctggctaTTGTCATGTCATTTCTTTTGTCCCTTTTACAACTAGTAAGAC----AT s panTro2.7 27399048 4327 + 160261443 ctgcaacctccacctcccgggttcaagctattttcctgcctcagcatcctgagtagctgggattacaggtgcctgccaccatgcccagctaatttttgta-ttttagtagagacagggtttcactg-gttggcca----ggtcttgaactcctgacctcatgatccgcctgcctcagcctcccaaagtgctgggattacaagcatgagccactgtgcccgccctctctggctcattttcatcacagaagtctttactctgtacttagaaaagtcctttcctgaccagcctatgtaaaaataaccactccctttatggtctctcttaccgcctactgtcttatttccttcatggaacttacctctaccagatattaactttcttatttattatctacttatttattgtctgttcccaaccacctccacactagattgcaaattctaagagagtcagaacAGAGAATCATTGATAAAATGTGGAAATCACttttttttttttttctgagacagggcttgctctgtcacacaggcccgagtacagtggtgcaatcatggctcactgcagccttgatctctaggtctcaagtaatcctctcacctcagcctcccaggtagctgagactacaggcacgtgccaccatgtccagttaatttttaaattttttgtatcaatgttgcccaggctggtcttgaactcctgggctccagcaatcctctcatctcagcctcccaagtagctgggaccacaggcatgcaccaccacacctggctAATTTttgttgttgttgttgttgttattgttgttgttttggtagagatgagtttttgccatgttgcccaagatgttctcaaattcctgagctcaagtgatcctccctcctggcccttccaaagtgctaggattgcagatgtgaatgaccacacagggccTCAGTAA---ATATTTCTGAATTAATG-TGAATAAGCATTT----------------AAATGAATGAAT----------------------------GATAGACTA-CTGAAAAGTTCAAGAACACCCTGAC--CTT----TTAGTAACATATGT---ATATTACTCTCTGATCACCCTATTTCTCTTTGAATATGTGCCAATAAATGTTCTGTGCCATTTGTTAAAGTCAA----TGTC--GATTTTACATCATCTACCAAGAT-------------------CAACTTATGTTTCCCAAA-GTCAACAAtttcttttttttgagatggagtctcactctgtcacccaggctggagtgcagtggcgtgttctcggctcactgcaagcttcgcctcctgggttcacgccattctcctgtctcagcctcccaagtaggtgggactacagctgcccgccaccatgcccagctaata-----tatatatatatatttgtatttttagtagagacagggtttccctgtgttagccgggatggtctcgatctcctgaccttatgatccacctgccttggcctcccaaagtgctgggattacaagtgtgaaccactgtgccccgccAAGGTCAACAATTTCTAAAGGTACTAAAAAACAAGTCTCAATAATTTTCAGCAAGATAT-GAAAATCACATGCTATCCTGCTGAAAATTATTGGGACTTGGATGTTGATAAAGTATGAATATTATTCATTCTGCTGTATTATATTTAATAAAGTTACTGACATCTTTTTAGTTTAACCTTTATTTCATTAGATTAGAA--ATAGaaata---atc-tttatt---taaattcatatattaaat-atatatg--tttatatattaaaaC------GAGTTAAATTAGTA--TATCATATT---TTCATTTCCTTTCAATATATGCTAGAAAGTTTCAATTTTTTT--AT---CTTAAAAG-------------------GTCAACAGTCCTTACAGAAGGAT--CAATTTCTAATTCTATATATAATGAAATTTAGTGTGGAAA------AGAC----TTAAAATACAGAAATTCACTTTATAGAGAATATT---TAAAGAATCCATCTATTCCGT-AAAGTAAGCTTCAGC-TAATGGCTCATGTAAGAAACAGGATAAG-AAAAGTATCAAACAAGA-------TGGAG------TAAATGTAT--TATCATGTGGCATCTATTACTGCCT----------ACTACTC-ATACCATAACATTTAACTGACTT-TTTTG-AGTGGCTTGCATTATATTTAGATACTCTTTGATCATACACATCAACCCTGATAAAATga--------tcatagagaa----ctttgcaaatca--tgt-aatagaa--ttcaa----------a------tctt----aagagcaatgcaatgccattgaacaag----cattctaaaacaatgagaaac--tattagatttggtattttagaaatttcactctgcaggatggagaatggag----------------tgaaagatatcagggctcaagac------------------------------------------agggagtcgcaaatgagagctagctacccacctaaaatagaatagtggcaatgaacatgagaaaaagcaagcagattctagaaagacttaa-gaggtaaaac----AGAAATTAATTAGCACTGTTTATTATATCTTGTCCCCTTCTACTTATACTTTTTGTGCATTTTACATAT-AGGGAGGGGATTCAAA---------GTTTACAAACT-AAAGCTAGTTCACATTAAATACTGGTGGAAATAA-----T---------ATCTTGTT-TCTATTCATTTCAAAATCTTAGGGGATTTATGGAAGCAAAGCTTTCA-----ACAGATTCACAGAATACTGATTAGATGTAGC-----------------------------------------------------------------------ATCA------------------------------------------------------------------------AACTATTTA-CCATGTAtgccaagaacaatcaccgaggaaaggacagtgtcttcaataaatggtgctgggaaaactggatgttcacacgcaaaagaatgaaactagactttcatgtctcaccttatacaaaactcaactaaaaatgg----------------ctta-----aagacccaaagcataaaattgctagaagaaaacataagggacacacttcaggacattggtctgggaaaagattttatgaatat------gactttaaaaacacaggcaacaaaagcaaaaataaacagatgagattatatcaaactaaaaagctcctgtacagcaaaggaaacaaccaagagagtgaaaagacaacctacagaatgggggaaaatatttgccaactattcatcctgcagggagattaatagccagaatatgcaggaaaatcaaacatctcaacagaaaaacaaaataaaacaaagaatccaatttaaaaatgggcaaacaatctgaatagacatttctcaaaagaagatatacaaatggttaacaaatacatgaaaaaaatgcccaacgtcactaatcatcaatgaaatgaagatcaaaactacaatgaaatattatctcaccccagttaggatggctattatcaaaaagacaaaaaataacaaatgcaggtgagaatgcagagaaaaaggaactcatacattgttggtggaaatgtaaactagtacagctactatggagaacagtatggaggttcctcaaaaaattaccagtagaacgaccaagtgatccagcaattccactactgggcgtttatccaaaggaaaggaaatcagtatattgaagagatatctacactccatgtttactgcagcactattcaaaattgccaagatatagaatcaacctaaatgtccaacaacagatgaatggataaggaaaatatggaatcccgtcattcacagcaacatgaatggaactgaaggaaaattatgttaagtgaaatcagccagaaacagaaagttaaacaccacattttctcactcatatgtagaaaagcttt-aaaaaaaaaaaaaaagatctcctagaaataataagtagaacagaggttactggagactggaaagagcatggggaagaaaaggataaggagagactccttaaaggctacaaaattacagctagataggagg-ataagttctagtgttctatagcaccttaagatgactataattcgcaatcgtatgtattttcaaatagct-----agaagatgtgaaatgtcccaacaagaagaaataataaatgtttgatatgatggaatgctaattgccctgatctgatcactatacattgtacgtactgaaacatcacatacaccccataaatatgtacaattaccatgtgtaaatttaaataaaTAAAAGAATATTCACCATGTAATTTCTTTTTATTACTTTTTTTGTCTTTTTGTTTCTTTGTTGG---Tttttttttttttttggttttgtttacttttgtttgagatggagtctcctctatcgcccaggctggagtgcagcagcatgatctcggctcactgcagaactccacctcccaggttcaagtagttctcctgcctcagcctcctgag-tagctggggttacaagcgtgcaccaccatgcctggctaattcttatatttttactagagatggggtttcaccagtttggtcaggctggtctcgaactcctgacctcaagtgatccacccacctcagcctcccaaagtgctggTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- s rheMac2.3 97245871 4504 - 196418989 CTGCAATCTCTCCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCTCCTGCCACCATGCCTGGCTAATTTTTGTATTTTTAATAGAGACAGGGTTTCACTGTGTTGGCCAGGCTGGTCTTGAACTCTCGACCTCGTGACCTGCTTGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGCATGAGCCACTGCGCCCGCCCTCTCTGGCTCATTTTCATCACAGAAGTCTCTACTCTGTACTT-GGAAAGTCCTTTCCTGACCAGCCTATATAAAAATAACCACTCCCTTTATGGTCTCTATCACCTCCTACTGTC--ATTTCCTTCATGGAACTTACCTCTACCAAATATTAACTTTCTTATTTATTATCCATTTATTTATTGTCTGTTCCCAACCACCTCCACACTAGATTGTAAATTCTAAGAGAGTCAGAACTGAGAACCATTGATAAAATGTGGAAATCAC--TTTTTTTTTTTTCTGAGACAGGGCTTGCTCTGTCACACAGGCCGGAGTACAGTGGTGCAATCATGGCTCACTGCAACCTTGATCTTCAGGTCTCAAGTAATCCTCTCACCTCAGCCTCCCAGGCAGCTGAGACTACAAGCACGTGCCACCGTGTCCAGTTAATTTTTAAATTTTTTGTATCGATGTTGCCCAGGCTGGTCTTGAACACCTCGGCTCCAGCAATCCTCCCGTCTCAGTCTCCCAAGTAGCTAGGACCACAGGCATGCACCGCCACACCTGGCTAATTT---------------TTGTTGTTGTTGTTGTTTTAGTAGAGATGAGTTTTTGCCGTGTTGCCCAAGCTGTTCTCAAACTCCTGAGCTCAAGTAATCCTCCCTCTTGGCCCTTCCAAAGTGCTAGGATTGCAGATGTGAAGGACCACACAGGGCCTCAGTAA---ATATTTCTGAATTAATG-TGAATAAGCATTT----------------AAATGAATGAAT----------------------------GATAGACTA-CTGAAAAGTTCAAGAACACCCTGAC--CTT----TTAGTAACATATGTATGATACTACTCTCTGATCA--CTATTTCTCTTTGAATATGCGCCAATAAATGTTCTGTGCCATTTGTTAAAGTCAA----TGTC--GATTTTACACCATCTACCCAGAT-------------------CAATTTATGTTTCCCAAA-GTCAACAGTTTGGTTTTTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGCACATTCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCTATTCTCCTGTCTCAGCCTCCAGAGTAGCTGGTACTACAGGCGCCCGCCACCACGCCCGGCTAATATTTTGTGTGTGTGTGTGTGTGTATTTTTAGTAGAGACAGGATTTCCCCGTGTTAGCCAGGATGGTCTCAATCTCCTGACCTTGTGATCCGCCTGCCTCGGCCTCCCAAAGTTCTGGGATTACAAACGTGAGCCACCGTGCCTGGCCAAAGTCAACAATTTCCAAAGGTAGTAAAAAACAAATCTCAATAATTTTCAGCAAGGTAT-GAAAATCACATGCTGTCCTGCTGAAAATTATTGAGACTTAGATGTTGATAAGGTATGAAGATTATTCATTCTGCTGTATTACATTTAATAAAGTCACTGACATCTTTTTAGTTTAACCTTTATTTCATTAGATTAAAA--ATAGAAATA---ATC-TTGATT---TAAATTCATATATTAAAT-ATATATG--TTTATATATTAAAAT------GAATTAAATTAGTA--TATCATATT---TTCATTTCCTTTCAATATATGCTGGAAAGTTTAAACTTTTGT--AT---CTT--AAG-------------------GTCAACAGTCCTTACAGAAGGAT--CAATTTCTAATTC----TATAATGAAATTTAGTGTGGAAA------AGAC----TTAAAATACAGAAATTCATTTTATAGAGAACATT---TAAAGAATTCATCTATTCCAT-AAAGTAAGCTTCAGC-TAATGGCTCACGTAAGAAACACGATAAG-AAAAGTATCAAACAAGA-------TGGAG------TAAATGTAT--TATCATGTGATATCTATTACTGCCT----------ACTACTC-ATACCATAACATTTAACTGACTT-TTTTG-AGTGGCTTGCATTCTATTTAGATACTGTTTGATCACACACATCAACCCTGATAAAATGA--------TCATAGAGAA----CTTTGCAAATCA--TGT-AACAGAA--TTCAA----------A------TCTT----AAGAGCCATGCAATGCCATTG---AAG----CATTCTAAAACAATGAGAAAC--TATTAGATTTGGTATTTTAGAAATTTCACTCAGCAGGATGGCGAATGGAG----------------TGAAAGATATCAGGGCTCAAGAC------------------------------------------GAGGAGTCGTAAATGAGAGCTAGCTACCCACCTAAAACTGAATAGTGGCAATGAACATGAGAAAAAGCAAGCAGATTCTAGAGAGACTTAAGGAGGTGAAAC----AGAACCTAATCAGCGCCGTTTATTATATCTTGTCCCCTTCTACTTATACTTTTTGTGCATTTTACATAT-AGGGAGGGGGTTCAAA---------GTTTACAAACT-AAAGCTATTTCACATTAAATACTGGTTGAAATAA-----T---------ATCTTGTT-TCTATTCAATTCAAAATCTTATGGGATTTATGGAGGCAAAGCTTTCA-----ACAGATTCACAGAATACTGATTAGATGTAGC-----------------------------------------------------------------------ATCG------------------------------------------------------------------------AACTATTTA-CCATGTATACCAAGAACAATCACTGAGGAAAAGACAGTGTCTTCAATAAATGGTGCTTGGAAAACTGGATGTTCACACACAAAAGAATGATACTAGACTCTCCCGTCTCATCTTGTAAAAAATTCAACTCAAAATGA----------------CTTA-----AAAACCCAAAGCATAAAATTGCTAGAATTAAATATAAGGGACACACTTCAGGACATTGGTCTGGGAAAAGATTTTATGAATGT------GACTTTAAAACCACAGGCAACAAAAGCAAAAAT-AACAGATGAGATTATATCAAACTAAAAAGCTTCTCTACAGCCAGGGAAACAATCAAGAGAGTGAAAAGACAACATACAGAATGGGGGAAAATATTTGCCAACTATTCATCCTGCAGGGGGATTAATAGCCAGAATATGCAGGAAAATCAAACAGCTCAACAGAAAAACAAAATAAAGCAAAGAATCCAATTTAAAAATGGGCAAACAATCTGAATAGATATTTTTCAAAAGAAGATATACAAATGGTCAACAAATATATGAAAAAAATGCCCAACATCACTAATCATCAATGAAATGAAAATCAAAACTACAATAAAATATTATCTCACTCCAGTTAGGATGGCTATTTTCAAAAAGACAAAAAATAACAAATGCAGGTGAGAATGTAGAGAAAAAGGAACTCATACATTGTTGGTGGGAATGTAAACTAGTACAGCTACTATGGAAAACAGTATGGAATTTCCTCAAAAAATTACCAGTAGAACGACCAGGTGATCCAGCAATTCCACTACTGGGCGTTTATCCAAAGGAAAGGAAATCAGTATATTGAAGAGATATCTACACTCCATGTTTACTGCAGCACTATTCAAAATTGCCAAGATATAGAAGCAACCTAAGTGTCCAACAACAGATGAATGGATAAAGAAAATATGGAATCCCGTCATTCACAGCAACATGAATGGAACTGAAGGACAATTATGTTAAGTGAAATCAGCCAGGAACAGAAAGTTAAACACCACATTTTCTCACTTATATGTAGAAAAGCTT----------AAAAAAAAATCTCCTAGAAATAATAAGTAGAACAGAGGTTAATGGAGACTGGAAAGAGCATAGGGAAGAAGAGGATAAGGAGAGACTCCTTAAAGGCTACAAAATTACAGCTAGAGAGGAGGAATAAGTTCTAGCGTTCTATACCACCTTAGGATGACTATAATTAACAATCGTATGTATTTTCCAATAGCTGAAAGAGAAGATATGAAATGTCCCAATAAGAAGAAATAATAAATGTTTGAGATGATGGAATGCTAATTGCCCTGATCTGATCACTATACATTGTATGTACTGAAACATCACATACACCCTATAAATATGTACAATTATTATGTGTAAATTTAAATAAATAAGAGAATATTCACCATGTAATTTCTTTTTATTACTTTTTTTGTCTTCTTGTTTCTTTGTTGG-------------------GTTTTGTTTTGTTTTGTTTGAGATGGAGTCTCCTCTATCGCCCAGGCTAGAGTGCAATGGCATGATCTTGGCTCACTGCACAACTCCACCTCCCAGGTTCAATCGGTTCTCCTGTCTCAGCCTCCTGAGATAGCTGGGATTACAAGCATGCACCACCATGCCCGGCTAATTTTTATATTTTTACTAGAGATGGGGTTTCACCAGGTTGGTCAGGTTGGTCTCGAACTCCTAACCTCAAGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGG--GATTACAGCCACTGAGCCCAGTCCATTTTTTAACACTTAGGGACAGGGTCTCACTCTGTCACCCAGTGCAGTGGCATAATCATAGCACACTGCAGTCTCAAACTCAAGGGATCCTCCCACCTCAGCCTCCCAAGTAGCTATGACTACAGGCATGTGCTACCATACCCGGCTATTGCCATGTCATTTCTTTTATCCCTTTTACAACTAGTAAGAC------ a score=-11.2 s hg18.7 27068172 58 + 158821424 GAGATAACTTATACAT------GATACATATGTATTATATAAGACATAAGTTGACagccaggtg s panTro2.unknown 0 0 + 0 ---------------------------------------------------------------- s rheMac2.3 97250383 58 - 196418989 GAGATAACTTATACAT------GATATATATGTATTATATAAGACATAAATTGACAGCCAGGTG a score=383.8 s hg18.7 27068230 1809 + 158821424 cagtagctcacacctgtaatcccagcactttgggaggctgaggcaggaagactgctggagcccaggagtttgagaccagcctgggcaacatggcaaaatcctgtc-tctacaaagaaaaatacaaaaaatactagccaggagtggcacacgtttatagccccagctactcaggaggctgaggtgggaggatcacttgagcctaggaggtagaggctgaagtaaccatgatcatgccactatactccagcctgggtgacagaatgagaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaGGAGAAGAAGAAGACATAGGC--AAGCTGAC-AAACAA----CAATATCACTTG----TTCAGGCACC-----------------AGCCTCCCTATGGCTCTTCCCTAAAAAA-TGCAATGCAggccaggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcacttgaggtcaggggttcgagaccagcttggccaacatggtgaaaccttgtctctactaaaaatacaaaaattacctgggcatggtggcacacgcctgtagtcccagctactcaggaggctgaggtaggagaatcgcttgaacctgggaggcagaggtttcagtgagctggaatcgagccactgcactccagcctgcgtgacagagcgagactctgtctttaaaaacaacaacaacaacaacaaAAAAAAAACAATGCAATGCTTCATAATAAT-TGCAAGGCCTTTatgttctttcctgcatatttctgcatatccaaatccagtatatattcctcagcttatttcaa---------cc---ccatgcagcc----tcccagatcccagaatctgggagt-aacaaattttctccttttcagaattcccattttcctcttatggcac-------------------------ttcatattctact-tagtgtaaggg-cttat-----ctccagtagatggtaagcatcttgtaaccagggttcttgtcatttccactttaagttacccacagaactt-gg--ca-gcacttggcatgtaacaaaagctccaaaaatatttatcaaatgaatacatCAATAGCTATTTCCAGCTGCTCTTTCCA-CCCTGCCTTGTTTCAACATCAGTGGA-------------CATGCTGATCA---CGATAGACATGCTGCTAGAGATCAAAACCTCAA-------------------------------TGGGACCTTTTGAATTATAGGCTGCGGGGGAGTGGAAGGCTCACTGACAACTTGGTAGAAACTATGCCAGATATTTTACTT--------------A-----AAAAGATACTGTTgggcaggtgcagcggctcccgcctgtaatcccagcactttgggaggccaaggcaggcggataacctgaagtcaggagttcgaggccagcctggccaacgtagtgaaatctcatctctactaaaaatacaaaaaatttgtcgggcatggtggcagccacctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccctggaagtggaagttgcagtgagccgaaatcgcaccattgcactccagcttgggcaacaagagtgaaactccttctaaaaaaaaaaaaaa----GATACTGT-TAAG--CCACAGGTCTAAACTTTGATTTATAATCTGTCTAACAACCGTCCTA-ATTGAAATTTTTAGTGTAAAAATTCCAATCACCAGTTTATCTTGGAACCTGGTTATCCCAGCATATCAATCCGTACATAAGAAATTGATGCAGG-C---TGggctgggcatggtggctcatgcctataatcccagcactttgggaggctgaggcgggcggatcacgagctcaggagttcgagaccagcctgaccaacatagtgaaaccccgtctccactaaa s panTro2.7 27404030 1797 + 160261443 cagtagctcacacctgtaatcccagcactttgggaggctgaggcaggaagactgctggagcccaggagtttgagacaagcctgggcaacatggcaaaatcctgtc-tctacaaagaaaaatacaaaaaatactagccaggagtggcacacgtttatagccccagctactcaggaggctgaggtgggaggatcacttgagcctaggaggtagaggctgaagtaaccatgatcatgccactatactccagcctgggtgacagaatgagaccctgtctcaaaaaaaaaaaaa----------------ggagaagaagaaGACATAGGC--AAGCTGAC-AAACAA----CAATATCACTTG----TTCAGGCACC-----------------AGCCTCCCTATGGCTCTTCCCTAAAAAA-TGCAATGCAggccaggtgtggtggctcacacctgtaatcccagcactttgggaggctgaggcaggcagatcacttgaggtcaggggttcgagaccagcttggccaacatggtgaaaccttgtctctactaaaaatacaaaaattacctgggcatggtggcacacgcctgtagtcccagctactcaggaggctgaggtaggagaatcgcttgaacctgggaggcagaggtttcagtgagctggaatcgagccactgcactccagcctgggtgacagagcgagactctgtctTTAAAaacaacaacaacaacaacaacaacaacaaAATGCAATGCTTCATAATAAT-TGCAAGGCCTTTatgttctttcctgcatatttctgcatatccaaatccagtatatattcctcagcttatttcaa---------cc---ccatgcagcc----tcccagatcccagaatctgggagt-aacaaattttctccttttcagaattcccattttcctcttatggcac-------------------------ttcatattctact-tagtgtaaggg-cttat-----ctccagtagatggtaagcatcttgtaatcagggttcttgtcatttccactttaagttacccacagaactt-gg--ca-gcacttggcatgtaacaaaagctccaaaaatatttatcaaatgaatacatCAATAGCTATTTCCAGCTGCTCTTTCCG-CCCTGCCTTGTTTCAACATCAGTGGA-------------CATGGTGATCA---CGATAGACATGCTGCTAGAGATCAAAGCCTCAA-------------------------------TGGGACCTTTTGAATTATAGGCTGCGGGGGAGGGGAAGGCTCACTGACAACTTGGTAGAAACTATGCCAGATATTTTACTT--------------A-----AAAAGATACTGTTgggcaggcacaacggctcctgcctgtaatcccagcactttgggaggccaaggcaggcggataacctgaagtcaggagttcgaggccagcctggccaacatagtgaaatcccatctctactaaaaatacaaaaaatttgtcaggcatggtggcagccacctgtaatcccagctactcgggaggctgaggcaggagaatcacttgaaccctggaagtggaagttgcagtgagccgaaatcgcatcattgcactccaacttcggcaacaagagcgaaactccttctaaaaaaaaaaaaaaaaaaGATACTGT-TAAG--CCGCAGGTCTAAACTTTGATTTATAATCTGTCTAACAATCGTCCTA-ATTGAAATTTTTAGTGTAATAATTCCAATCACCAGTTTATCTTGGAACCTGGTTATCCCAGCATATCAATCCGTACATAAGAAATTGATGCAGG-C---TGggctgggcatggtggctcatgcctataatcccagcactttgggaggctgaggcgggcggatcacgagctcaggagttcgagaccagcctgaccaacatagtgaaaccccgtctccactaaa s rheMac2.3 97250441 122 - 196418989 CAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATTGCTGGAGCCCAGGGGCTTGAGAACAACTTGGGCAACATGGCAAAATCCTGTCTTCTACAAAGAAAAATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- a score=1478.4 s hg18.7 27070039 2790 + 158821424 agtacaaaaattagcccagcgtggtggcacggacctgtaatcccagctacttgggaggctgagacaggagactcgcttgaacccgggaggcggaggttgcggtgagccaagatcgcaccattgcactacagcctgggggacagagtgagactccgtttcaaaaaaaaaaaaaaaagaaagaaagaaaGAAAGAAATTAGCTCAAGCTAACCAGACTGACTG---GGTTGCCTGTATTGAAACTCAAGATA-------------GCATTTTAAAAC----A-TT-----AAAATAAATTTTGAGCTTCACATGCAATTTATAAGTAGTTTTCTAAGGAATTCCGTTTCCAGAAAA----------CAATCATGTTGAAATCCCAAG-AGAG-AAAACATTAATT-TCA-------AAA--------------------AAAAAAAA--GAC--AACCGTTAAAGACAA-T-CAGATCCACAAAACTGGCAGCTGCAGCAGTTTTCAAAATGTCTAAAC------TGCTTCAACAGG-----------AAGCCAGCCAAAGTTCTGTCCATTCAGGCATAGAACAAACTTACCCTTTTAATTCCTTTCTTACTGTGTGGAATACTGTAATACT-GCTGTATTGTGAATGCTCTCTAGGC-CTGATACTGGGTCAAAGGTGTATTTGGCTTCTAGGGTTTTAGGAAAAATGAGTTTA-----AGCTTCTGATACCCCAGCATATTTGGATTTGTAGCTGAATCCTTTCTAGCT---GTATTAAATA--ACTAACAAAACAAGGCCATTTTTTCTTTAAAAAAA---AAGTTGatactgtggtatgtaggggtaaaatggca-tggtatctgggacttgctttaaaatacttcagcaaagggggaaaa-ggagatgacagatgaag---aaaatgacaaagtctagacagtaatttcatttgtgtggtgagtagat-ggcagttcattgtactacttctctaacatttgtgtatgtttgga----ttttttc-tTTTTGAGTGTTACTTTATTGCAATAACAATTTTAAATTAAAAACAGAAATCTGGACAAACAG--TGCCTAGAGTCCTGAATCATTCTTGAGAACTGCAGGGTGTATTCCATCTTAG-----TGTATCTTAGTTTAATTCTAGACTCATGTCCTTAAAGCTTGCATGTTGGC-TCTCAGC-----TTTG-------CTGTTTCCTTTAAAAAAAAA-------AAA--------GGGTTCActgggtgtcgtggctcacgcctgtaatcccagcactttgggagactgaggcaggcggatcacctgaggtca-gggttcgaaaccagcctgccctacatggtgaaaccctgtatctattaaaaatacaaaaattagccaggcgtggtggcgtgcacctgtaatcccagcttactcaggaggctgaggcaggagaatcacttgaacctaggaggtggaggttgcagtgagccgagatcacgccactgcactccagcctgggcaacagagcaagactccatctcagggaagaaaaaaaaGGTGTCTTTTttagcaaggcatgatggcacatgcctatagtcccagctactagggaggctgaggtgcaaggatctcctgacccaggacagaggctacagtgagctatgat--------tgtgccactgcactctagcctgggtgacagagcaagattctatctctaataataataataataataa------------------ATTTTTAAAATGTTTTCT-CCGAAAGTCTAACTCAACCAAGTGAGATGTGCCTGTGGTCCAGGGCACCAAAACACAGTCAGAAATTTCAGGATGGTTCATGACTTCATATCTCATTTCTAAGTTTC-TGCGGACACAGTATCTTCTTGGTAGAGGTAGCTTG-CTTTCTATTtgtggtggacat-gtgttgcttttgctgtccagg----atttacactgcttcccgtaatttaaaaaaatccctagatttcca-tttggggattcaccctagccccattctcagtcca----tgatgaggccgattctacctttggatgtgggggtggagtttaagatcaagagtaag----tcagagcatccc--attcccccagaca-ctgactttttcatagatgggcacctgacctaagtc-aggccaatca----gaattaagggaggttcaggtcttagacttaaacctatgtttgtgctgc-cagg---------aagtgaactctctttctca---tgtgatttggtattgggttaatgt------gttcttgtag-ggcttgaagccaccatg---------gatggcctgccaattaa-ttaaatacagcagaaa--gtagc-aatatagccaatggatgt-----------------gaaaagacgataggttctaaagacaacatgtgagctctga-ccagctgcccttgaagactgttcctgtcctttctgttatgtgagccaataaattacct---GAG-----TGCTGGCTAATCCATAGTTTAATCACTTCCTCTTATAATTAAGCCACACT-G--TATAGTCAGATAGCTTGATAATATAGCACTTTCTAAGGTTTGCATGCCAAAACAAGATGCATAAACTTAAAGCATAATTCTTACTTATCAAAATACATGAATGAGTTCTGGAACTGTGGCGTC-ATGGTCATTAAATTCTGTGattaattcaaccaatattgcatgcctattgtgtgactgtgctaagtgctgATTCTAGCAAGATAAGGGCAGCTCAGCAACGGAAGATAAATGCAGTC-CCTAAATGTTTTAATTTGCTCAAC----TGACATATCTAGTTATTTTTGAAATTTTTGTAATGAAACttttt----t------ttttt-----------gagacggagtct------------------cgc-tctgccgcccaggcta-----------------gagtgcagtggcgtaatctaggctca---------------ctgcaagctctgcctcccaggttcacgccattctcctgcctcagcctcccaagtagctgggactaaaggcacccgccaccacgcctggctaa s panTro2.7 27405827 2801 + 160261443 agtacaaaaattagcccagcgtggtggcacgcacctgtaatcccagctacttgggaggctgagactggagactcgcttgaacccaggaggcggaggttgcggtgagccaagatcgcaccattgcactacagcctgggggacagagtgagactccgtttcaaaaaagaaagaaa--gaaagaaagaaagaaagaaaTTAGCTCAAGCTAACCAGACTGACTG---GGTTGCCTGTATTGAAACTCAAGATA-------------GTATTTTAAAAC----A-TT-----AAAATAAATTTTGAGCTTCACATGCAATTTATAAGTAGTTTTCTAAGGAATTCCGTTTCCAGAAAA----------CAATCATGTTGAAATCCCAAG-AGAG-AAAACGTTAATT-TCA-------AAA--------------------AAAAAAAAAAGAC--AACCGTTAAAGACAA-T-CAGATCCACAAAACTGGCAGCTGCAGCAGTTTTCAAAATGTCTAAAC------TGCTTCAACAGG-----------AAGCCAGCCAAAGTTCTGTCCATTCAGGCATAGAACAAACTTACCCTTTTAATTCCTTTCTTACTGTGTGGAATACTGTAATACT-GCTGTATTGTGAATGCTCTCTAGGC-CTGATACTGGGTCAAAGGTGTATTTGGCTTCTAGGGTTTTAGGAAAAACGAGTTTA-----AGCTTCTGATACCCCAGCATATTTGGATTTGTAGCTGAATCCTTTCTAGCT---GTATTAAATA--ACTAAAAAAACAAGGCCATTTTTTCTTTAAAAAAA---AAGTTGatactgtggtatgtaggggtaaaa