Table des matières
ANNOTATING THE BACILLUS SUBTILIS GENOME: DATA HANDLING AND METHOD INTEGRATION
Plan
Plan
B. subtilis model organism (1)
B. subtilis model organism (2)
B. subtilis life cycle
Plan
The B. subtilis genome: before…
The B. subtilis genome: after…
B. subtilis genome features (1)
B. subtilis genome features (2)
B. subtilis genome features (3)
Plan
Annotation strategy and methods
Imagene: Description
Imagene: Launching tasks
Imagene: Method parameters
Imagene: Strategy decomposition
Imagene: Visualizing results
Detecting sequencing errors: BLASTX strategy
Frameshift detected by BLASTX
Detecting sequencing errors: CDS/GeneMark strategy
Frameshift detected by CDS/GeneMark
Plan
Genomic databases: Why?
Genomic databases: How?
Plan
Original Colibri & SubtiList structures
4th Dimension features
Former SubtiList/Colibri structures
Former contig construction strategy
4th Dimension SubtiList interface (Home)
4th Dimension SubtiList interface (contig list)
4th Dimension SubtiList interface (contig page)
Plan
GenoList relational structure
Plan
SubtiList on the Web: Home Page (http://www.pasteur.fr/Bio/SubtiList/)
SubtiList on the Web: Alphabetical Gene List (1)
SubtiList on the Web: Alphabetical Gene List (2)
SubtiList on the Web: Gene Detail
SubtiList on the Web: Chromosome Region (Graphic)
SubtiList on the Web: Chromosome Region (Gene List)
SubtiList on the Web: Keyword Gene List
SubtiList on the Web: Tabulated Data Export
SubtiList on the Web: Sequence Export
SubtiList on the Web: Multicriteria Search
SubtiList on the Web: Pattern Search Form
SubtiList on the Web: Pattern Search Results
SubtiList on the Web: Options
Plan
Perspectives
Acknowledgements
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