Tools : Tertiary structure
| Name | Platform | Description | Link | |
 |
3D structures superimposition (NPS@) | PRABI |
||
|
ATOME | Montpellier |
@utomatic Threading Optimisation Modelling & Evaluation | @TOME server |
| AutoDock | MIG Jouy |
Automated Docking of Flexible Ligands to Receptors | website | |
|
CaspR | Marseille |
An automated approach for molecular replacement | homepage |
| COSA | Pasteur Paris |
Clustal ouput structural analysis | online form | |
|
COUDES | RPBS |
web server for beta-turn prediction | COUDES online |
|
ElNémo | Marseille |
The Web-interface to The Elastic Network Model, a fast and simple tool to compute the low frequency normal modes of a protein. | homepage |
|
ESAP | MIG Jouy |
Prediction of protein loop conformation | webpage |
|
Geno3D | PRABI |
Automatic molecular modeling | online form |
| HMMTOP | MIG Jouy |
an automatic server for predicting transmembrane helices and topology of proteins | website | |
|
IMGT/StructuralQuery | Montpellier |
Retrieval of IMGT/3Dstructure-DB entries using domain type and/or position structural criteria | online form |
|
KinDOCK | Montpellier |
Ligand Transposition Server | KinDOCK server |
|
LocPred | RPBS |
Local structure prediction | LocPred online |
|
PAT (Protein Analysis Toolkit) | Montpellier |
toolkit to facilitate the combination of different processing tools for more complex protein analyses | PAT server |
|
PPG | RPBS |
Protein Picture Generator | PPG online |
|
SA-Search | RPBS |
search for 3D fragments similar to (fragments of) a query structure | SA-Search online |
|
SCit | RPBS |
Tools for protein side chain conformation analysis and editing | SCit online |
|
Small compounds | RPBS |
project involving the screening of databases of small chemical compounds | Project homepage |
|
SuMo | OUEST-genopole PRABI |
Surfing the Molecules - Search for similar 3D sites in proteins | homepage |
| TMHMM | MIG Jouy |
Prediction of transmembrane helices in proteins | TMHMM server | |
|
WLoop | RPBS |
predict protein loop backbone structures from their sequences and their flank backbone structures | WLoop online |
|
XmMol | RPBS |
desktop macromolecular visualization and modeling tool | homepage |
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