ReNaBI : Tools - Proteic analysis

Tools : Proteic analysis

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	Name	Platform	Description	Link
	Antheprot	PRABI	Analyse the proteins : package for protein sequence analysis	homepage
	BlastSets	Bordeaux	New strategy for the representation and the integration of biomolecular knowledge at a cellular scale.	webpage
	CS-PSeq-Gen	RPBS	Simulation of protein sequences under constraints	homepage
	CysState	RPBS	Cysteines disulfide bonding state prediction from protein sequence	CysState online
	FROST	MIG Jouy	Fold Recognition Oriented Search Tool - usually used when sequence or profile alignment methods such as PSI-BLAST or SAM are unable to find similar sequences	homepage
	GPS@		Bioinformatic Grid web portal dedicated to protein sequence analysis.	GPS@ homepage
	GriPPS		Grid Protein Pattern Scanning	GriPPS homepage
	HCA	RPBS	Hydrophobic cluster analysis	HCA online
	MPSA	PRABI	Multiple Protein Sequence Analysis	homepage
	NPS@	PRABI	Network Protein Sequence Analysis - an interactive Web server dedicated to protein sequence analysis	homepage
	PAT (Protein Analysis Toolkit)	Montpellier	toolkit to facilitate the combination of different processing tools for more complex protein analyses	PAT server
	PredAcc	RPBS	Prediction of side chains accessibility to solvent	PredAcc online
	Predotar	Genoplante-Info	a neural-network-based prediction program capable of identifying ER signal peptides and mitochondrial or plastid transit peptides	Predotar online
	PSORT	Pasteur Paris	predicts protein subcellular localization sites from their amino acid sequences	online form
	SAPS	Pasteur Paris	Statistical Analysis of Protein Sequences	online form
	seqinR	PRABI	an R package devoted to exploratory data analysis and data visualisation of biological sequences	seqinR homepage
	SimCT	Toulouse Marseille	clustering based on ontologies	webpage
	T-REKS		De novo tandem repeat detection in protein sequences	T-REKS online

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