ReNaBI : Tools - Transcriptomics : visualization

Tools : Transcriptomics : visualization

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	Name	Platform	Description	Link
	AGScan	SIGENAE	a micro-array image processing software	AGScan’s webpage
	Array File Maker	Lille	generates input files for clustering, helps prepare colored figures and Venn diagrams, and can uncover aneuploidy in yeast microarray data.	homepage
	ArrayPlot	Toulouse	Normalization software, with some visualization tools	homepage
	BRB Array tool	Lille Toulouse	an integrated package for the visualization and statistical analysis of DNA microarray gene expression data using an Excel front end	homepage
	Clusfavor	Toulouse	Cluster and Factor Analysis Using Varimax Orthogonal Rotation
	ClusPackX	Strasbourg	Differential expression test, classification and visualisation of expression class profiles.
	D-chip	Lille Toulouse	a software package implementing model-based expression analysis of oligonucleotide arrays and several high-level analysis procedures	homepage
	Expression Profiler	Toulouse	cluster analysis, pattern discovery, pattern visualization, study and search Gene Ontology categories, ...	homepage
	Freeview	Toulouse	viewing and optimizing gene expression dendrograms	homepage
	Genesight	Toulouse	explore large data sets from multiple experimental groups using advanced normalization, visualization, and statistical decision support tools	webpage
	GEPAS	Lille Toulouse	Gene Expression Pattern Analysis Suite	homepage
	J-express	Lille Toulouse	multidimensional scaling, clustering, and visualisation	homepage
	MAExplorer	Lille	MicroArray Explorer
	Slcview	Toulouse	create image files from .cdt and .gtr files en masse from a Unix command prompt	homepage
	SOMview	Toulouse	Make Xcluster graphics	webpage
	SOTA	Toulouse	Self Organising Tree Algorithm	online form
	TreeMapClusterView	Toulouse	explore microarray data using a tree view	webpage
	Treeview	Lille Toulouse	Graphically browse results of clustering and other analyses from Cluster	Eisen software

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