Databases : Protein Databases
| Name | Platform | Description | Link | |
 |
ACNUC | PRABI |
Retrieval system for the nucleotide sequence databases GenBank or EMBL and for the protein sequence databases SWISS-PROT or NBRF. | ACNUC webpage |
|
AliasServer | Bordeaux |
a web server to handle multiple aliases used to refer to proteins | homepage |
|
Balibase & Balibase2 | Strasbourg |
manually-refined multiple sequence alignments specifically designed for the evaluation and comparison of multiple sequence alignment programs. | webpage |
| Blocks | Pasteur Paris |
Multiply aligned ungapped segments corresponding to the most highly conserved regions of proteins | Blocks home | |
| Décrypthon | Strasbourg |
the result of the first comprehensive comparison (Smith-Waterman) of all known proteins. | Decrypthon at Infobiogen | |
| DOMO | Montpellier |
multiple sequence alignments including protein domains as well as repeating sequence regions extracted from non-redundant molecular primary structures contained in the SWISS-PROT and PIR databases | webpage | |
|
ESTHER | Montpellier |
analysis of protein and nucleic acid sequences belonging to the superfamily of alpha/beta hydrolases homologous to cholinesterases | webpage |
|
FamFetch | PRABI |
the general interface used to query the families databases developed using the HOBACGEN model | FamFetch webpage |
| Genpept | Pasteur Paris |
Translations of Genbank | Pasteur’s webpage | |
|
GOLDEN | Pasteur Paris |
A tool to search the nucleic and proteic databases. | webpage |
|
HCVDB | PRABI |
The aim of Hepatitis C Virus DataBase is to establish correlations between virus sequences and pathology. | website |
|
Hogenom | PRABI |
database of homologous genes from fully sequenced organisms, structured under ACNUC sequence database management system | Hogenom webpage |
| Interpro | Strasbourg Toulouse |
Database of protein families, domains and functional sites in which identifiable features found in known proteins can be applied to unknown protein sequences. | EBI’s webpage | |
| IPRMatches | Strasbourg |
List of precomputed matches of Interpro entries in Swissprot and TrEMBL. | EBI’s webpage | |
| Nrl3d | Pasteur Paris |
Sequence and annotation extracted from PDB | Pasteur’s webpage | |
| Nrprot | Pasteur Paris |
NCBI non-redundant: Genbank CDS translations+PDB+Swissprot+PIR | Pasteur’s webpage | |
|
NuReBase | PRABI |
bioinformatic database of nuclear receptors | NuReBase website |
| Pfam | Strasbourg Pasteur Paris Toulouse |
A Collection of Protein Domain Families | Pfam at Sanger | |
| Prints | Pasteur Paris |
Protein Motif Fingerprint Database | Prints home | |
|
Prodom | Pasteur Paris PRABI |
A protein domain database which consists of homologous domains detected in the SWISS-PROT database | Prodom home |
|
PROSE | MIG Jouy |
The relational database PROSE contains protein sequences from Swissprot, Trembl and Trembl_New | webpage |
| Prosite | Strasbourg Pasteur Paris Toulouse |
Dictionary of Protein Sites and Patterns | Prosite home | |
| RefSeqP | Strasbourg |
a comprehensive, integrated, non-redundant set of protein sequences for major research organisms. | RefSeq at NCBI | |
|
RTKdb | PRABI |
database containing all the protein sequences of Receptor Tyrosine Kinase, organized into families | webpage |
| SBase | Pasteur Paris |
A Collection of Annotated Protein Domain Sequences | Pasteur’s webpage | |
| Swissprot | Pasteur Paris |
SWISS-PROT Annotated protein sequence database | Swiss-prot home | |
| Uniprot | Strasbourg Pasteur Paris MIG Jouy Toulouse |
Universal Protein Resource = Swiss-Prot + TrEMBL + PIR | Uniprot home |
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