Networks & cell functioning
| Name | Platform | Description | Link | |
 |
AcypiCyc | PRABI |
Acyrthosiphon pisum Metabolic Pathways | Use AcypiCyc |
|
AliasServer | Bordeaux |
a web server to handle multiple aliases used to refer to proteins | homepage |
| AutoDock | MIG Jouy |
Automated Docking of Flexible Ligands to Receptors | website | |
|
BIOCHAM | a programming environment for modeling biochemical systems, making simulations and querying the model in temporal logic CTL | BIOCHAM web page | |
|
ctrl- Dev | aims at integrating gene transcription, molecular signalling and cell motion in a relatively manageable computational model of development | author’s homepage | |
|
CycSim | Genoscope |
A platform dedicated to simulation with constraint-based models of metabolism | CycSim platform |
|
FusionDB | Marseille |
a database of bacterial and archaeal gene fusion events | FusionDB online |
|
GARMeN | OUEST-genopole |
graphical analyzer tool for genetic and biological networks | Irisa’s Symbiose project |
|
GINsim | Marseille |
GINsim (Gene Interaction Network simulation) is a computer tool for the modeling and simulation of genetic regulatory networks | homepage |
|
GNA - Genetic Network Analyzer | PRABI |
A method for the qualitative modeling and simulation of genetic regulatory networks | GNA Helix page |
|
Intact project | Bordeaux |
a european federative database of protein-protein interactions and their annotations | Project homepage |
| KEGG | MIG Jouy |
Kyoto Encyclopedia of Genes and Genomes | KEGG homepage | |
|
KinDOCK | Montpellier |
Ligand Transposition Server | KinDOCK server |
|
MetExplore | Toulouse |
a web server to link metabolomic experiments and genome-scale metabolic networks | MetExplore web server |
| PCE | RPBS |
Protein Continuum Electrostatics | PCE online | |
|
ProViz | Bordeaux |
a protein-protein interaction graphs visualisation tool | ProViz homepage |
|
SimCT | Toulouse Marseille |
clustering based on ontologies | webpage |
|
SMBionet | Selection of Models of Biological Networks | homepage | |
|
SPiD | MIG Jouy |
Subtilis Protein interaction Database | SPiD online |
|
Tulip | software system dedicated to the visualization of huge graphs | Homepage |
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- 8/02/2011 - WORKSHOP: Identification and Control of Biological Interaction Networks
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