Installation
If you are lucky the executable program works on your system. Download it, type
> chmod +x DeCo
and try
> DeCo
If it does not work you will need to download the source C++ program. Its
compilation requires that Bio++ is installed
(see the installation intructions) and that
you know in which directory it is installed. Then unpack Deco by typing
> tar -zxvf DeCoLT.tar.gz
> cd DeCo
Then edit the makefile file and go to the line
CFLAGS1 = -O3 -I/usr/include/Bpp/ -L/usr/lib
Change the two /usr in the options to the directory in
which Bio++ is installed on your system (it can be /usr/local
or somewhere in your home directory for example.
Then type
> make
Input
You have to prepare four input files, an example is given here. Then type
> DeCo conf_file.conf
where conf_file is the configuration, an example being in the dataset as hbg-gt_all.conf
Page hosted by the PRABI and LBBE, Last modification June 2013
Contact: Eric dot Tannier at inria dot fr