HoSeqI
BBE
contribution to
PBIL
in Lyon, France
Number of sequences to identify:
One sequence
Several sequences
Sequence type :
protein sequence
nucleotide sequence
Known translation frame:
Yes
No
Frame value:
1
2
3
F
-1
-2
-3
R
6
Paste the fasta sequence [
example with Hovergen prot database
] [
example with HoGenom prot database
]
Database :
HOVERGEN 49 (AA)
HOVERGEN 48 (AA)
HOGENOM 6 (AA)
HOGENOM 6 (AA)
HOGENOM 5 (AA)
HOGENOM 4 (AA)
HOMOLENS 3 (AA)
HOMOLENS 4 (AA)
HOMOLENS 5 (AA)
HOBACGEN (AA)
PhEVER 1.0 (AA)
PhEVER 2.0 (AA)
HAMAP (AA)
Hobacgen nucl.
Hovergen nucl.
HoGenom nucl.
Nurebase nucl.
Information about HoGenom prot.
Information about Hovergen prot.
Information about RTKdb prot.
Information about Hovergen clean prot.
Information about HAMAP prot.
Information about Nurebase prot.
Information about HomolEns prot.
Multiple alignment program:
Muscle
Muscle-Progressif
Muscle-Fast
MultAlin
Phylogenetic tree program:
QuickTree
FastME
BIONJ
PhyML
Because of the nyumber of analyzer sequences, identification process will take more few minutes and will not be able to be done on-line.
So, when computations are finished, a mail will be sent to you.
E-mail:
BLASTP options
E
value threshold:
Filter:
default
none
Descriptions:
0
10
50
100
250
500
10000
Alignments:
0
10
50
100
250
500
10000
Other advanced options:
This form allows you to automatically assign users' sequences to homologous gene families from a set of databases. After identification of the most similar gene family to the query sequence, this sequence is added to the whole alignment, and the phylogenetic tree of the family is rebuilt. Thus, the phylogenetic position of the query sequence in its gene family can be easily identified.
If you have problems or comments...
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Back to PBIL home page