PBIL

CpGProD (CpG Island Promoter Detection)

BBE contribution to PBIL in Lyon, France

CpGProD description:
CpGProD is a mammalian-specific software which proposes to identify the promoter regions associated with CpG islands (CGIs). CpGProD uses the structural characteristics of the CGIs associated with promoters (start CGIs). In a first step, CpGProD searches for all the CGIs located over the sequences and, in a second step, CpGProD identifies start CGIs and orientation of the potential promoters.
Go to the CpGProD home page
Choose your species:
human (and other mammals excepting Muridae)
mouse (and other Muridae)

Enter your sequences in FASTA format:
The sequences have to be masked with RepeatMasker


or

Enter your file in FASTA format:
The sequences have to be masked with RepeatMasker

Option for "graphical" output:
identical scale for all the sequences
individual scale for each sequences

Submit/Clear query:

If you have problems or comments...

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