MareyMap
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MareyMap comes with a standard set of maps. This set is loaded by default when you launch MareyMapGUI. it contains maps for Arabidopsis thaliana, Caenorhabditis elegans, Drosophila melanogaster and Homo sapiens.

Download the collection:

Rdata file: MareyMap_collection.rda

text file: MareyMap_collection.txt

Arabidopsis thaliana
Arabidopsis thaliana maps are provided by NASC

See: Wright SI, Agrawal N, Bureau TE.Wright SI, Agrawal N, Bureau TE. Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana. Genome Res. 2003 Aug;13(8):1897-903.

Download maps for Arabidopsis thaliana:

Rdata file: Arabidopsis_thaliana.rda

text file: Arabidopsis_thaliana.txt

Caenorhabditis elegans
Caenorhabditis elegans maps are provided by Wormbase

See: Marais G, Mouchiroud D, Duret L.Marais G, Mouchiroud D, Duret L. Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes. Proc Natl Acad Sci U S A. 2001 May 8;98(10):5688-92.

Download maps for Caenorhabditis elegans:

Rdata file: Caenorhabditis_elegans.rda

text file: Caenorhabditis_elegans.txt

Drosophila melanogaster
Drosophila melanogaster maps are provided by Flybase

See: Marais G, Mouchiroud D, Duret L.Marais G, Mouchiroud D, Duret L. Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes. Proc Natl Acad Sci U S A. 2001 May 8;98(10):5688-92.

Download maps for Drosophila melanogaster:

Rdata file: Drosophila_melanogaster.rda

text file: Drosophila_melanogaster.txt

Homo sapiens
Maps for Homo sapiens originally published by Kong A, Gudbjartsson DF, Sainz J, Jonsdottir GM, Gudjonsson SA, Richardsson B, Sigurdardottir S, Barnard J, Hallbeck B, Masson G, Shlien A, Palsson ST, Frigge ML, Thorgeirsson TE, Gulcher JR, Stefansson K.Kong A, Gudbjartsson DF, Sainz J, Jonsdottir GM, Gudjonsson SA, Richardsson B, Sigurdardottir S, Barnard J, Hallbeck B, Masson G, Shlien A, Palsson ST, Frigge ML, Thorgeirsson TE, Gulcher JR, Stefansson K. A high-resolution recombination map of the human genome. Nat Genet. 2002 Jul;31(3):241-7.
Download maps for Homo sapiens (female):

Rdata file: Homo_sapiens_female.rda

text file: Homo_sapiens_female.txt

Download maps for Homo sapiens (male):

Rdata file: Homo_sapiens_male.rda

text file: Homo_sapiens_male.txt

Download maps for Homo sapiens (mean):

Rdata file: Homo_sapiens_mean.rda

text file: Homo_sapiens_mean.txt





Last modification: 14/11/2008 pm30 18:57 Credits-Webmaster