Metabolic data of endosymbiontic, parasitic and free bacteria
Filters applied on these data :
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Organism
Color legend		 Life style Pathways Compounds Enzymes Distinct EC numbers Reactions Metabolic Genes Reactions without EC number PDF file of global characteristics


Common characteristics of the data
  • The pathway holes are not included (a pathway hole is a missing reaction in a metabolic pathway detected as present in the organism)


Global properties The description file contains graphics which represent :
  • Frequencies of the 30 most frequent compounds
  • Proportion of compounds involving in varying number of compounds
  • Number of reactions involving in vaying number of pathways
  • Proportion of reactions containing varying numbers of substrates
  • Proportion of reactions that are catalysed by one or more enzymes
  • Proportion of enzymes that catalyse one or more reactions
  • Proportion of the EC class reactions


Filters
Remove Reactions Remove reactions involving big molecules (proteins, tRNAs) as end products ?
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Remove the reactions that involve compounds of type class ?
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Get only pathway-reactions and remove side compounds
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Remove pairs of cofactors in each reaction where they occur
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This project has been developed in the Baobab Team and the BF2I by Ludovic COTTRET