Relationship Matrices for Diploid and Autopolyploid Species

Documentation for package ‘AGHmatrix’ version 3.0.1

Amatrix	Construction of Relationship Matrix A
AmatrixPolyCross	Construction of pedigree-based relationship matrix with parental guessing possibility
asciitonumber	Convert pedigree names to numeric indices using C++
datatreat	Organizes pedigree data in a chronological way using C++
expandAmatrix	Add new crosses to a current A matrix
filterpedigree	Filter the pedigree to keep only the genealogy of a subset of individuals
formatmatrix	Transform a matrix in 3 columns
Gmatrix	Construction of Relationship Matrix G
Hmatrix	Construction of Combined Relationship Matrix H
H_martini_blocks	Compute Martini block corrections (H11, H12, H21, H22 - A22)
Mcheck	Check and filter markers
missingdata	Survying on missing data
munoz_var_mean_by_Aclass	Compute var/mean of G by classes of rounded A, and fill varA/meanG
ped.mrode	Pedigree Data
ped.sol	Pedigree data for autopolyploid examples
snp.pine	Molecular data for diploid examples
snp.sol	Molecular data for autopolyploid examples