# Generated by roxygen2: do not edit by hand

S3method(AIC,hsquared_fit)
S3method(BLUP,default)
S3method(BLUP,hsquared_fit)
S3method(EBV,default)
S3method(EBV,hsquared_fit)
S3method(G_matrix,default)
S3method(G_matrix,hsquared_fit)
S3method(R_matrix,default)
S3method(R_matrix,hsquared_fit)
S3method(accuracy,default)
S3method(accuracy,hsquared_fit)
S3method(anova,hsquared_fit)
S3method(autonomy,default)
S3method(autonomy,hsquared_fit)
S3method(breeding_values,default)
S3method(breeding_values,hsquared_fit)
S3method(coef,hsquared_fit)
S3method(common_env_effects,default)
S3method(common_env_effects,hsquared_fit)
S3method(common_env_proportion,default)
S3method(common_env_proportion,hsquared_fit)
S3method(common_env_proportion_interval,default)
S3method(common_env_proportion_interval,hsquared_fit)
S3method(conditional_evolvability,default)
S3method(conditional_evolvability,hsquared_fit)
S3method(confint,hsquared_fit)
S3method(covariance_standard_errors,default)
S3method(covariance_standard_errors,hsquared_fit)
S3method(data_status,default)
S3method(data_status,hs_data)
S3method(direct_heritability,default)
S3method(direct_heritability,hsquared_fit)
S3method(direct_maternal_covariance,default)
S3method(direct_maternal_covariance,hsquared_fit)
S3method(direct_variance,default)
S3method(direct_variance,hsquared_fit)
S3method(eigen_G,default)
S3method(eigen_G,hsquared_fit)
S3method(eqtl_table,default)
S3method(eqtl_table,hsquared_fit)
S3method(evolvability,default)
S3method(evolvability,hsquared_fit)
S3method(fit_diagnostics,default)
S3method(fit_diagnostics,hsquared_fit)
S3method(fitted,hsquared_fit)
S3method(fixef,default)
S3method(fixef,hsquared_fit)
S3method(g_max,default)
S3method(g_max,hsquared_fit)
S3method(gamma_matrix,default)
S3method(gamma_matrix,hsquared_fit)
S3method(genetic_correlation,default)
S3method(genetic_correlation,hsquared_fit)
S3method(genetic_covariance,default)
S3method(genetic_covariance,hsquared_fit)
S3method(genetic_loadings,default)
S3method(genetic_loadings,hsquared_fit)
S3method(ggplot2::autoplot,hs_gwas)
S3method(ggplot2::autoplot,hsquared_fit)
S3method(gwas,default)
S3method(gwas,hsquared_fit)
S3method(gwas_table,default)
S3method(gwas_table,hs_gwas)
S3method(gwas_table,hsquared_fit)
S3method(heritability,default)
S3method(heritability,hsquared_fit)
S3method(heritability_interval,default)
S3method(heritability_interval,hsquared_fit)
S3method(heritability_standard_error,default)
S3method(heritability_standard_error,hsquared_fit)
S3method(latent_breeding_values,default)
S3method(latent_breeding_values,hsquared_fit)
S3method(lod_scores,default)
S3method(lod_scores,hs_gwas)
S3method(lod_scores,hsquared_fit)
S3method(logLik,hsquared_fit)
S3method(marker_effects,default)
S3method(marker_effects,hsquared_fit)
S3method(marker_variance_explained,default)
S3method(marker_variance_explained,hsquared_fit)
S3method(maternal_effects,default)
S3method(maternal_effects,hsquared_fit)
S3method(maternal_proportion,default)
S3method(maternal_proportion,hsquared_fit)
S3method(maternal_proportion_interval,default)
S3method(maternal_proportion_interval,hsquared_fit)
S3method(mean_evolvability,default)
S3method(mean_evolvability,hsquared_fit)
S3method(metafounder_effects,default)
S3method(metafounder_effects,hsquared_fit)
S3method(metafounder_groups,default)
S3method(metafounder_groups,hsquared_fit)
S3method(nobs,hsquared_fit)
S3method(partner_variance,default)
S3method(partner_variance,hsquared_fit)
S3method(permanent_effects,default)
S3method(permanent_effects,hsquared_fit)
S3method(plot,hsquared_fit)
S3method(predict,hsquared_fit)
S3method(prediction_error_variance,default)
S3method(prediction_error_variance,hsquared_fit)
S3method(print,hs_backend_info)
S3method(print,hs_data)
S3method(print,hs_data_status)
S3method(print,hs_fit_diagnostics)
S3method(print,hs_formula_status)
S3method(print,hs_gwas)
S3method(print,hs_model_spec)
S3method(print,hs_validation_status)
S3method(print,hsquared_fit)
S3method(print,summary_hs_data)
S3method(print,summary_hs_model_spec)
S3method(print,summary_hsquared_fit)
S3method(profile,hsquared_fit)
S3method(qtl_table,default)
S3method(qtl_table,hsquared_fit)
S3method(random_coefficients,default)
S3method(random_coefficients,hsquared_fit)
S3method(ranef,default)
S3method(ranef,hsquared_fit)
S3method(reliability,default)
S3method(reliability,hsquared_fit)
S3method(repeatability,default)
S3method(repeatability,hsquared_fit)
S3method(repeatability_interval,default)
S3method(repeatability_interval,hsquared_fit)
S3method(residual_correlation,default)
S3method(residual_correlation,hsquared_fit)
S3method(residual_covariance,default)
S3method(residual_covariance,hsquared_fit)
S3method(residuals,hsquared_fit)
S3method(respondability,default)
S3method(respondability,hsquared_fit)
S3method(rr_correlation,default)
S3method(rr_correlation,hsquared_fit)
S3method(rr_covariance,default)
S3method(rr_covariance,hsquared_fit)
S3method(rr_eigenfunctions,default)
S3method(rr_eigenfunctions,hsquared_fit)
S3method(rr_genetic_variance,default)
S3method(rr_genetic_variance,hsquared_fit)
S3method(rr_heritability,default)
S3method(rr_heritability,hsquared_fit)
S3method(specific_variance,default)
S3method(specific_variance,hsquared_fit)
S3method(summary,hs_data)
S3method(summary,hs_model_spec)
S3method(summary,hsquared_fit)
S3method(total_heritability,default)
S3method(total_heritability,hsquared_fit)
S3method(variance_along_gradient,default)
S3method(variance_along_gradient,hsquared_fit)
S3method(variance_component_standard_errors,default)
S3method(variance_component_standard_errors,hsquared_fit)
S3method(variance_components,default)
S3method(variance_components,hsquared_fit)
S3method(vcov,hsquared_fit)
export(BLUP)
export(EBV)
export(G_matrix)
export(R_matrix)
export(accuracy)
export(animal)
export(autonomy)
export(autoplot)
export(backend_info)
export(breeding_values)
export(common_env)
export(common_env_effects)
export(common_env_proportion)
export(common_env_proportion_interval)
export(conditional_evolvability)
export(covariance_standard_errors)
export(covariance_structure_lrt)
export(cytoplasmic)
export(data_status)
export(direct_heritability)
export(direct_maternal_covariance)
export(direct_variance)
export(dominance)
export(eigen_G)
export(epistasis)
export(eqtl_table)
export(evolvability)
export(fit_diagnostics)
export(fixef)
export(formula_status)
export(g_max)
export(gamma_matrix)
export(genetic_correlation)
export(genetic_covariance)
export(genetic_loadings)
export(genomic)
export(group)
export(gwas)
export(gwas_table)
export(heritability)
export(heritability_interval)
export(heritability_standard_error)
export(hs_control)
export(hs_data)
export(hs_recovery_forest)
export(hsquared)
export(imprinting)
export(inbreeding)
export(latent_breeding_values)
export(lod_scores)
export(marker_effects)
export(marker_scan)
export(marker_variance_explained)
export(markers)
export(maternal_effects)
export(maternal_env)
export(maternal_genetic)
export(maternal_proportion)
export(maternal_proportion_interval)
export(mean_evolvability)
export(metafounder)
export(metafounder_effects)
export(metafounder_groups)
export(model_spec)
export(partner_variance)
export(paternal_env)
export(paternal_genetic)
export(permanent)
export(permanent_effects)
export(precision)
export(prediction_error_variance)
export(qtl_scan)
export(qtl_table)
export(random_coefficients)
export(ranef)
export(reliability)
export(relmat)
export(repeatability)
export(repeatability_interval)
export(residual_correlation)
export(residual_covariance)
export(respondability)
export(rr_correlation)
export(rr_covariance)
export(rr_eigenfunctions)
export(rr_genetic_variance)
export(rr_heritability)
export(single_step)
export(specific_variance)
export(theme_hsquared)
export(total_heritability)
export(unknown_parent_group)
export(validation_status)
export(variance_along_gradient)
export(variance_component_standard_errors)
export(variance_components)
importFrom(ggplot2,
  .data,
  autoplot
)
importFrom(lifecycle,deprecated)
importFrom(stats,nobs)
