Classifying DNA Sequences to Taxonomic Groupings
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Documentation for package ‘phylotypr’ version 0.2.0
Help Pages
| build_kmer_database | Build kmer database |
| classify_sequence | Classify 16S rRNA gene sequence fragment |
| classify_sequences | Classify a vector of 16S rRNA gene sequence fragments |
| create_database | Build custom database object for use with phylotypr |
| filter_taxonomy | Filter taxonomy |
| phylotypr_example | Get path to phylotypr example |
| print_taxonomy | Print taxonomy for an unknown sequence |
| rdp_trainset9 | RDP training set v9 |
| rdp_trainset9_pds | RDP training set v9 |
| read_fasta | Read in a FASTA-formatted file containing DNA sequences |
| read_taxonomy | Read in taxonomy files |
| write_fasta | Write to a FASTA-formatted file |