Detection and Spatial Analysis of Tertiary Lymphoid Structures
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Documentation for package ‘tlsR’ version 0.1.2
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| calc_icat | Calculate ICAT (Immune Cell Arrangement Trace) Index |
| detect_tic | Detect Tumor-Infiltrating T-cell Clusters (TIC) |
| detect_TLS | Detect Tertiary Lymphoid Structures using a KNN-density approach |
| scan_clustering | Scan Tissue for Local Immune Cell Clustering (K-integral) |
| toy_ldata | Toy multiplexed imaging data for examples |