CographLayout           CographLayout R6 Class
CographNetwork          CographNetwork R6 Class
CographTheme            CographTheme R6 Class
abbrev_label            Abbreviate Labels
add_edges               Add Edges to a Network
add_nodes               Add Nodes to a Network
aggregate_layers        Aggregate Layers
aggregate_weights       Aggregate Edge Weights
as.data.frame.cograph_motif_result
                        Motif Results as a Data Frame
as.data.frame.cograph_network
                        Cograph Network as a Data Frame
as_cograph              Convert to Cograph Network
as_mcml                 Convert to mcml
as_tna                  Convert cluster_summary to tna Objects
assortativity           Degree Assortativity Coefficient
assortativity_attribute
                        Attribute Assortativity (Homophily)
binarize                Binarize Edge Weights
bind_networks           Combine Two Networks
centrality              Calculate Network Centrality Measures
centrality_access_information
                        Access and Hide Information
centrality_adaptive_leaderrank
                        Adaptive LeaderRank centrality
centrality_alpha        Alpha (Katz) Centrality
centrality_authority    HITS Authority and Hub Scores
centrality_average_distance
                        Average Distance Centrality
centrality_barycenter   Barycenter Centrality
centrality_beta_measure
                        BG-index or beta power measure
centrality_betweenness
                        Betweenness Centrality
centrality_bottleneck   Bottleneck Centrality
centrality_bridging     Bridging Centrality
centrality_bridging_capital
                        Bridging capital from lost information walks
centrality_brokerage_coordinator
                        Gould-Fernandez Brokerage — Coordinator Role
centrality_brokerage_gatekeeper
                        Gould-Fernandez Brokerage — Gatekeeper Role
centrality_brokerage_itinerant
                        Gould-Fernandez Brokerage — Itinerant
                        (Consultant) Role
centrality_brokerage_liaison
                        Gould-Fernandez Brokerage — Liaison Role
centrality_brokerage_representative
                        Gould-Fernandez Brokerage — Representative Role
centrality_cda          Clustering degree algorithm centrality
centrality_centroid     Centroid Value
centrality_closeness    Closeness Centrality
centrality_closeness_vitality
                        Closeness Vitality
centrality_clusterrank
                        ClusterRank Centrality
centrality_coleman_theil
                        Coleman-Theil hierarchy index
centrality_communicability
                        Communicability Centrality
centrality_communicability_betweenness
                        Communicability Betweenness Centrality
centrality_community_based
                        Community-Based Centrality, Comm Centrality and
                        Community-Based Mediator
centrality_community_hub_bridge
                        Community Hub-Bridge Centrality
centrality_constraint   Burt's Constraint
centrality_controlrank
                        ControlRank centrality
centrality_coreness     K-Core Decomposition (Coreness)
centrality_cross_clique
                        Cross-Clique Connectivity
centrality_current_flow_betweenness
                        Current Flow Betweenness Centrality
centrality_current_flow_closeness
                        Current Flow Closeness Centrality
centrality_dangalchev   Dangalchev Closeness Centrality
centrality_decay        Decay Centrality
centrality_degree       Degree Centrality
centrality_degree_discount
                        DegreeDiscountIC and SingleDiscount Rankings
centrality_diffusion    Diffusion Centrality
centrality_diffusion_centrality
                        Finite-horizon diffusion centrality
centrality_dil          Degree and Importance of Lines
centrality_distance_entropy
                        Distance Entropy
centrality_diversity    Diversity Centrality
centrality_dkgm         DK-based gravity model
centrality_dmnc         Density of Maximum Neighborhood Component
                        (DMNC)
centrality_dynamical_importance
                        Dynamical importance by exact vertex deletion
centrality_dynamics_sensitive
                        Dynamics-sensitive centrality
centrality_eccentricity
                        Eccentricity
centrality_effective_size
                        Effective Size (Burt's)
centrality_ehcc         Extended hybrid characteristic centrality
centrality_eigenvector
                        Eigenvector Centrality
centrality_entropy      Entropy Centrality
centrality_entropy_variation
                        Entropy Variation
centrality_exogenous    Exogenous centrality
centrality_expected     Expected Centrality
centrality_expected_force
                        Expected Force centrality
centrality_expected_influence_1
                        Expected Influence (one-step)
centrality_expected_influence_2
                        Expected Influence (two-step)
centrality_extended_coreness
                        Extended neighborhood coreness
centrality_extended_gravity
                        Extended gravity centrality
centrality_extended_local_bridging
                        Extended local bridging centrality
centrality_extended_mixed_gravity
                        Extended mixed gravitational centrality
centrality_flow_betweenness
                        Flow Betweenness Centrality
centrality_gateway      Gateway Coefficient
centrality_generalized_closeness
                        Generalized Closeness Centrality
centrality_gilschmidt   Gil-Schmidt Power Index
centrality_global_structure
                        Global structure model centrality
centrality_graph_regularization
                        Graph regularization centrality
centrality_gravity      Gravity centrality
centrality_harary       Harary Centrality
centrality_harmonic     Harmonic Centrality
centrality_hcc          Hybrid characteristic centrality
centrality_heatmap      Heatmap, Flow Coefficient, Local Entropy,
                        Weighted h-index, Redundancy
centrality_hubbell      Hubbell Centrality
centrality_hybrid_global_structure
                        Hybrid global structure model centrality
centrality_iec          Immediate Effects Centrality
centrality_iira         Improved iterative resource allocation (IIRA)
centrality_improved_closeness
                        Improved closeness centrality
centrality_improved_global_structure
                        Improved global structure model centrality
centrality_information
                        Information Centrality (Stephenson-Zelen)
centrality_integration
                        Integration Centrality
centrality_ira          Iterative resource allocation (IRA)
centrality_katz         Katz Centrality
centrality_ked          KED method centrality
centrality_kreach       Geodesic K-Path Centrality
centrality_lac          Local Average Connectivity (LAC)
centrality_laplacian    Laplacian Centrality
centrality_leaderrank   LeaderRank Centrality
centrality_length_scaled_betweenness
                        Betweenness and closeness variants that carry a
                        tuning parameter
centrality_leverage     Leverage Centrality
centrality_lhc          Lhc Index
centrality_lin          Lin Centrality
centrality_linerank     LineRank centrality
centrality_lnc          Local neighbor contribution centrality
centrality_load         Load Centrality
centrality_lobby        Lobby Index (H-Index of Neighborhood)
centrality_local_bridging
                        Local Bridging Centrality
centrality_local_dimension
                        Local Dimension
centrality_local_dimension_fixed
                        Fixed-Radius, Fuzzy and Volume Local Dimensions
centrality_local_efficiency
                        Local efficiency, s-core, fragmentation, k-path
                        census and EPC
centrality_local_information_dimension
                        Local Information Dimensionality
centrality_localized_bridging
                        Localized bridging centrality from ego
                        betweenness
centrality_malatya      Malatya centrality
centrality_map_equation
                        Map equation centrality with explicit coding
                        and flow conventions
centrality_markov       Markov Centrality
centrality_mcc          Maximal clique centrality
centrality_mcgm         Multi-characteristics gravity model
centrality_mixed_gravity
                        Mixed gravitational centrality
centrality_mnc          Maximum Neighborhood Component (MNC)
centrality_modified_expected_force
                        Modified Expected Force centrality
centrality_modularity_vitality
                        Modularity Vitality
centrality_ncvoterank   NCVoteRank
centrality_neighbor_distance
                        Neighborhood centrality, and its neighbor
                        distance special case
centrality_neighborhood_connectivity
                        Neighborhood Connectivity
centrality_ninl         Node and Neighbor Layer Information centrality
centrality_node_contraction
                        Node Contraction Centrality (IMC and IIMC)
centrality_pagerank     PageRank Centrality
centrality_pairwisedis
                        Pairwise Disconnectivity (Potapov et al. 2008)
centrality_participation
                        Participation Coefficient
centrality_percolation
                        Percolation Centrality
centrality_power        Bonacich Power Centrality
centrality_prestige_domain
                        Domain Prestige
centrality_prestige_domain_proximity
                        Domain Proximity Prestige
centrality_proximal_betweenness
                        Proximal betweenness centrality
centrality_radiality    Radiality Centrality
centrality_random_walk
                        Random Walk Centrality
centrality_random_walk_decay
                        Random walk decay centrality
centrality_reaching_local
                        Local Reaching Centrality (Mones, Vicsek &
                        Vicsek 2012)
centrality_relative_entropy
                        Relative-Entropy Integrated Evaluation
centrality_residual_closeness
                        Residual Closeness Centrality
centrality_resistance_curvature
                        Node resistance curvature
centrality_rsp_betweenness
                        Randomized Shortest Paths Betweenness
                        Centrality
centrality_rumor        Rumor Centrality
centrality_s_shell      s-shell Index
centrality_salsa        SALSA Authority Centrality
centrality_semilocal    Semi-Local Centrality
centrality_shapley_game1
                        Shapley Value Centrality (Games 1, 2 and 3)
centrality_spectralrank
                        SpectralRank with optional diagonal prior
                        information
centrality_strength     Strength Centrality (Weighted Degree)
centrality_stress       Stress Centrality
centrality_subgraph     Subgraph Centrality
centrality_topological_coefficient
                        Topological Coefficient
centrality_transitivity
                        Local Transitivity (Clustering Coefficient)
centrality_truss        Truss, mixed-degree decomposition and local
                        social-capital measures
centrality_trust_pagerank
                        Trust-PageRank
centrality_two_way_rw   Two-Way Random Walk Betweenness
centrality_volume       Volume centrality
centrality_voterank     VoteRank Centrality
centrality_weighted_kshell
                        Weighted k-shell, Renewed Coreness and Geodesic
                        k-path
centrality_weighted_leaderrank
                        Weighted LeaderRank centrality
centrality_wiener       Wiener Index Centrality
centrality_within_module_z
                        Within-Module Degree Z-Score
centrality_wvoterank    WVoteRank, EnRenew and VoteRank++
centrality_x_degree     X-degree centrality
centralization          Centralization index
cluster_quality         Cluster Quality Metrics
cluster_significance    Test Significance of Community Structure
cograph                 Create a Network Visualization
color_communities       Color Nodes by Community
communities             Community Detection
community_consensus     Consensus Community Detection
community_edge_betweenness
                        Edge Betweenness Community Detection
community_fast_greedy   Fast Greedy Community Detection
community_fluid         Fluid Communities Detection
community_infomap       Infomap Community Detection
community_label_propagation
                        Label Propagation Community Detection
community_leading_eigenvector
                        Leading Eigenvector Community Detection
community_leiden        Leiden Community Detection
community_louvain       Louvain Community Detection
community_optimal       Optimal Community Detection
community_sizes         Get Community Sizes
community_spinglass     Spinglass Community Detection
community_walktrap      Walktrap Community Detection
compare_communities     Compare Community Structures
complement_network      Complement of a Network
contract_nodes          Contract Nodes into Groups
core_periphery          Detect Core-Periphery Structure
csum                    Cluster Summary Statistics
degree_distribution     Degree Distribution Visualization
detect_communities      Detect Communities in a Network
disparity_filter        Disparity Filter
dispersion              Dispersion (Backstrom-Kleinberg 2014)
dyad_census             Dyad Census
edge_centrality         Calculate Edge Centrality Measures
edge_reciprocity        Edge Reciprocity
ego_networks            Ego-Network Metrics
estrada_index           Estrada Index
extract_motifs          Extract Motifs from Network Data
extract_triads          Extract Triads with Node Labels
filter_edges            Filter Edges by Metadata
filter_nodes            Filter Nodes by Metadata or Centrality
fit_degree_distribution
                        Fit Statistical Distributions to Degree
                        Sequence
from_qgraph             Convert a qgraph object to cograph parameters
from_tna                Convert a tna object to cograph parameters
get_data                Get Original Data from Cograph Network
get_edge_list           Extract Raw Edge List from TNA Model
get_edges               Get Edges from Cograph Network
get_groups              Get Node Groups from Cograph Network
get_labels              Get Labels from Cograph Network
get_layout              Get a Registered Layout
get_meta                Get Metadata from Cograph Network
get_nodes               Get Nodes from Cograph Network
get_shape               Get a Registered Shape
get_source              Get Source Type from Cograph Network
get_theme               Get a Registered Theme
ggplot_robustness       Compare Network Robustness (ggplot2)
group_centrality        Group Centrality (Everett-Borgatti 1999)
hai_datasets            Human-AI Interaction Coding Sequences
invert_weights          Invert Edge Weights (Similarity to Distance and
                        Back)
is_bipartite            Check if a Matrix Could Be Bipartite
is_directed             Check if Network is Directed
is_tna_network          Check if Network is TNA-based
k_shortest_paths        Find K Shortest Loopless Paths (Yen's
                        Algorithm)
layer_degree_correlation
                        Degree Correlation Between Layers
layer_similarity        Layer Similarity
layer_similarity_matrix
                        Pairwise Layer Similarities
layout_circle           Circular Layout
layout_groups           Group-based Layout
layout_oval             Oval Layout
layout_saqr             Saqr Layout (Start/End transition flow)
layout_spring           Fruchterman-Reingold Spring Layout
layout_target           Target Layout (focal-node, topological)
list_centralities       Catalogue of the Centrality Measures
list_layouts            List Available Layouts
list_palettes           List Available Color Palettes
list_shapes             List Available Shapes
list_svg_shapes         List Registered SVG Shapes
list_themes             List Available Themes
membership              Get Community Membership
motif_census            Network Motif Analysis
motifs                  Network Motif Analysis
mutate_edges            Add or Change Edge Attributes
mutate_nodes            Add or Change Node Attributes
n_communities           Get Number of Communities
n_edges                 Get Number of Edges
n_nodes                 Get Number of Nodes
neighborhood_overlap    Neighborhood Overlap (Jaccard) for Each Edge
network_bridges         Bridge Edges
network_clique_size     Largest Clique Size
network_cut_vertices    Cut Vertices (Articulation Points)
network_girth           Network Girth (Shortest Cycle Length)
network_global_efficiency
                        Global Efficiency
network_local_efficiency
                        Local Efficiency
network_radius          Network Radius
network_rich_club       Rich Club Coefficient
network_small_world     Small-World Coefficient (Sigma)
network_summary         Network-Level Summary Statistics
network_vertex_connectivity
                        Network Vertex Connectivity
network_wrangling       Network Wrangling Verbs
nodes                   Get Nodes from Cograph Network (Deprecated)
normalize_weights       Normalize Edge Weights
overlay_communities     Overlay Community Blobs on a Network Plot
palette_blues           Blues Palette
palette_colorblind      Colorblind-friendly Palette
palette_diverging       Diverging Palette
palette_pastel          Pastel Palette
palette_rainbow         Rainbow Palette
palette_reds            Reds Palette
palette_viridis         Viridis Palette
palettes                Color Palettes
panel_layout            Configure a custom multi-panel layout
plot.cograph_cluster_significance
                        Plot Cluster Significance
plot.cograph_communities
                        Plot Community Structure
plot.cograph_core_periphery
                        Plot Core-Periphery Structure
plot.cograph_degree_fit
                        Plot method for cograph_degree_fit
plot.cograph_motif_analysis
                        Plot Motif Analysis Results
plot.cograph_motifs     Plot Network Motifs
plot.cograph_network    Plot cograph_network Object
plot.cograph_rich_club
                        Plot Rich Club Results
plot.cograph_vulnerability
                        Plot Node Vulnerability
plot.tna_bootstrap      Plot Bootstrap Results
plot.tna_disparity      Plot Disparity Filter Result
plot_alluvial           Plot Alluvial Diagram
plot_bootstrap_forest   Forest Plot for Bootstrap Network Results
plot_centrality         Plot Centrality
plot_centrality_compare
                        Plot Centrality Comparison
plot_centrality_distribution
                        Plot Centrality Distribution
plot_centrality_heatmap
                        Plot Centrality Heatmap
plot_chord              Chord Diagram
plot_compare            Plot Network Difference (alias of
                        plot_difference)
plot_comparison_heatmap
                        Plot Comparison Heatmap
plot_degree_correlation
                        Plot Degree-Degree Correlation
plot_difference         Plot Network Difference
plot_edge_diff_forest   Forest Plot for Bootstrap Edge Differences
plot_edge_weights       Plot Edge Weight Distribution
plot_heatmap            Plot Network as Heatmap
plot_htna               Plot Heterogeneous TNA Network (Multi-Group
                        Layout)
plot_mcml               Plot Multi-Cluster Multi-Layer Network
plot_mixed_network      Plot Mixed Network
plot_ml_heatmap         Multilayer Network Heatmap
plot_mlna               Multilevel Network Visualization
plot_motifs             Plot a motif/subgraph result
plot_mtna               Multi-Cluster TNA Network Plot
plot_net_bootstrap_group
                        Plot a Group Bootstrap Result
plot_net_stability      Plot Centrality Stability Results
plot_netobject_group    Plot a Group of Nestimate netobjects
plot_netobject_ml       Plot a Multilevel Nestimate netobject
plot_network_evolution
                        Plot Network Evolution (Small Multiples)
plot_robustness         Plot Network Robustness
plot_simplicial         Simplicial Complex Visualization
plot_temporal           Temporal Network Prism (3D Glass Box)
plot_tna                TNA-Style Network Plot (qgraph Compatible)
plot_trajectories       Plot Individual Trajectories
plot_transitions        Plot Transitions Between States
print.cograph_communities
                        Print Community Structure
print.cograph_degree_fit
                        Print method for cograph_degree_fit
print.cograph_network   Print cograph_network Object
project_bipartite       Project Bipartite Network to One-Mode
reaching_global         Global Reaching Centrality (Mones, Vicsek &
                        Vicsek 2012)
register_layout         Register a Custom Layout
register_shape          Register a Custom Shape
register_svg_shape      Register Custom SVG Shape
register_theme          Register a Custom Theme
regulation_net          Learning Regulation Transition Network
remove_edges            Remove Edges from a Network
remove_isolates         Remove Isolated Nodes
remove_nodes            Remove Nodes from a Network
rename_nodes            Rename Nodes
render-ggplot           ggplot2 Conversion
render-grid             Grid Rendering
reorder_nodes           Reorder the Nodes of a Network
reverse_edges           Reverse Edge Direction
rich_club               Rich Club Coefficient
rich_club_local         Local Rich Club Score
robustness              Network Robustness Analysis
robustness_auc          Calculate Area Under Robustness Curve (AUC)
robustness_summary      Summary of Robustness Analysis
select_bridges          Select Bridge Edges
select_component        Select Connected Component
select_edges            Select Edges with Lazy Computation
select_edges_between    Select Edges Between Node Sets
select_edges_involving
                        Select Edges Involving Nodes
select_k_core           Select the k-Core of a Network
select_neighbors        Select Node Neighbors (Ego Network)
select_nodes            Select Nodes with Lazy Centrality Computation
select_top              Select Top N Nodes by Centrality
select_top_edges        Select Top N Edges
set_edges               Set Edges in Cograph Network
set_groups              Set Node Groups
set_layout              Set Layout in Cograph Network
set_nodes               Set Nodes in Cograph Network
shortest_paths          Compute Shortest Path Distances
simmelian_strength      Simmelian Strength (Triangle Count per Edge)
simplify                Simplify a Network
sn_edges                Set Edge Aesthetics
sn_ggplot               Convert Network to ggplot2
sn_layout               Apply Layout to Network
sn_nodes                Set Node Aesthetics
sn_palette              Apply Color Palette to Network
sn_save                 Save Network Visualization
sn_save_ggplot          Save as ggplot2
sn_theme                Apply Theme to Network
soplot                  Plot Cograph Network
spanning_tree           Minimum or Maximum Spanning Tree
split_components        Split a Network into Its Connected Components
splot.group_tna_permutation
                        Plot Group Permutation Test Results
splot.net_bootstrap     Plot Nestimate Bootstrap Results
splot.tna_disparity     Plot Disparity Results with splot
splot.tna_permutation   Plot Permutation Test Results
student_interactions    Student Interaction Edge List
subgraphs               Extract Specific Motif Instances (Subgraphs)
summarize_clusters      Build MCML from Raw Transition Data
summarize_network       Summarize Network by Clusters
summary.cograph_network
                        Summary of cograph_network Object
supra_adjacency         Supra-Adjacency Matrix
supra_interlayer        Extract Inter-Layer Block
supra_layer             Extract Layer from Supra-Adjacency Matrix
symmetrize              Symmetrize a Directed Network
theme_cograph_classic   Classic Theme
theme_cograph_colorblind
                        Colorblind-friendly Theme
theme_cograph_dark      Dark Theme
theme_cograph_gray      Grayscale Theme
theme_cograph_minimal   Minimal Theme
theme_cograph_nature    Nature Theme
theme_cograph_viridis   Viridis Theme
themes-builtin          Built-in Themes
threshold_edges         Threshold Edges by Weight, Count, Proportion or
                        Density
to_data_frame           Export Network as Edge List Data Frame
to_directed             Convert an Undirected Network to Directed
to_igraph               Convert Network to igraph Object
to_matrix               Convert Network to Adjacency Matrix
to_network              Convert Network to statnet network Object
to_undirected           Convert a Directed Network to Undirected
triad_census            Triad Census
trophic_incoherence     Trophic Incoherence Parameter
unregister_svg_shape    Unregister SVG Shape
verify_with_igraph      Verify Against igraph
vulnerability           Node Vulnerability
