Analysis and Visualization of Complex Networks

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Documentation for package ‘cograph’ version 2.7.2

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A B C D E F G H I K L M N O P R S T U V W

-- A --

abbrev_label Abbreviate Labels
add_edges Add Edges to a Network
add_nodes Add Nodes to a Network
aggregate_layers Aggregate Layers
aggregate_weights Aggregate Edge Weights
ai_coding Human-AI Interaction Coding Sequences
ai_detailed Human-AI Interaction Coding Sequences
as.data.frame.cograph_motif_result Motif Results as a Data Frame
as.data.frame.cograph_network Cograph Network as a Data Frame
assortativity Degree Assortativity Coefficient
assortativity_attribute Attribute Assortativity (Homophily)
as_cograph Convert to Cograph Network
as_mcml Convert to mcml
as_mcml.cluster_summary Convert to mcml
as_mcml.default Convert to mcml
as_mcml.group_tna Convert to mcml
as_mcml.mcml Convert to mcml
as_tna Convert cluster_summary to tna Objects
as_tna.cluster_summary Convert cluster_summary to tna Objects
as_tna.default Convert cluster_summary to tna Objects
as_tna.mcml Convert cluster_summary to tna Objects

-- B --

binarize Binarize Edge Weights
bind_networks Combine Two Networks

-- C --

centrality Calculate Network Centrality Measures
centrality_access_information Access and Hide Information
centrality_adaptive_leaderrank Adaptive LeaderRank centrality
centrality_alpha Alpha (Katz) Centrality
centrality_authority HITS Authority and Hub Scores
centrality_average_distance Average Distance Centrality
centrality_barycenter Barycenter Centrality
centrality_beta_measure BG-index or beta power measure
centrality_betweenness Betweenness Centrality
centrality_bottleneck Bottleneck Centrality
centrality_bridging Bridging Centrality
centrality_bridging_capital Bridging capital from lost information walks
centrality_bridging_coefficient Truss, mixed-degree decomposition and local social-capital measures
centrality_brokerage_coordinator Gould-Fernandez Brokerage — Coordinator Role
centrality_brokerage_gatekeeper Gould-Fernandez Brokerage — Gatekeeper Role
centrality_brokerage_itinerant Gould-Fernandez Brokerage — Itinerant (Consultant) Role
centrality_brokerage_liaison Gould-Fernandez Brokerage — Liaison Role
centrality_brokerage_representative Gould-Fernandez Brokerage — Representative Role
centrality_cda Clustering degree algorithm centrality
centrality_centroid Centroid Value
centrality_closeness Closeness Centrality
centrality_closeness_vitality Closeness Vitality
centrality_clusterrank ClusterRank Centrality
centrality_coleman_theil Coleman-Theil hierarchy index
centrality_communicability Communicability Centrality
centrality_communicability_betweenness Communicability Betweenness Centrality
centrality_community_based Community-Based Centrality, Comm Centrality and Community-Based Mediator
centrality_community_hub_bridge Community Hub-Bridge Centrality
centrality_community_mediator Community-Based Centrality, Comm Centrality and Community-Based Mediator
centrality_comm_centrality Community-Based Centrality, Comm Centrality and Community-Based Mediator
centrality_constraint Burt's Constraint
centrality_controlrank ControlRank centrality
centrality_coreness K-Core Decomposition (Coreness)
centrality_cross_clique Cross-Clique Connectivity
centrality_current_flow_betweenness Current Flow Betweenness Centrality
centrality_current_flow_closeness Current Flow Closeness Centrality
centrality_dangalchev Dangalchev Closeness Centrality
centrality_decay Decay Centrality
centrality_degree Degree Centrality
centrality_degree_discount DegreeDiscountIC and SingleDiscount Rankings
centrality_delta_betweenness Betweenness and closeness variants that carry a tuning parameter
centrality_delta_closeness Betweenness and closeness variants that carry a tuning parameter
centrality_diffusion Diffusion Centrality
centrality_diffusion_centrality Finite-horizon diffusion centrality
centrality_dil Degree and Importance of Lines
centrality_distance_entropy Distance Entropy
centrality_diversity Diversity Centrality
centrality_dkgm DK-based gravity model
centrality_dmnc Density of Maximum Neighborhood Component (DMNC)
centrality_dynamical_importance Dynamical importance by exact vertex deletion
centrality_dynamics_sensitive Dynamics-sensitive centrality
centrality_eccentricity Eccentricity
centrality_effective_size Effective Size (Burt's)
centrality_ego_betweenness Betweenness and closeness variants that carry a tuning parameter
centrality_ehcc Extended hybrid characteristic centrality
centrality_eigenvector Eigenvector Centrality
centrality_enrenew WVoteRank, EnRenew and VoteRank++
centrality_entropy Entropy Centrality
centrality_entropy_variation Entropy Variation
centrality_epc Local efficiency, s-core, fragmentation, k-path census and EPC
centrality_exogenous Exogenous centrality
centrality_expected Expected Centrality
centrality_expected_force Expected Force centrality
centrality_expected_influence_1 Expected Influence (one-step)
centrality_expected_influence_2 Expected Influence (two-step)
centrality_extended_coreness Extended neighborhood coreness
centrality_extended_gravity Extended gravity centrality
centrality_extended_local_bridging Extended local bridging centrality
centrality_extended_mixed_gravity Extended mixed gravitational centrality
centrality_flow_betweenness Flow Betweenness Centrality
centrality_flow_coefficient Heatmap, Flow Coefficient, Local Entropy, Weighted h-index, Redundancy
centrality_fragmentation Local efficiency, s-core, fragmentation, k-path census and EPC
centrality_fuzzy_local_dimension Fixed-Radius, Fuzzy and Volume Local Dimensions
centrality_gateway Gateway Coefficient
centrality_generalized_closeness Generalized Closeness Centrality
centrality_geodesic_kpath Weighted k-shell, Renewed Coreness and Geodesic k-path
centrality_gilschmidt Gil-Schmidt Power Index
centrality_global_structure Global structure model centrality
centrality_godfather Truss, mixed-degree decomposition and local social-capital measures
centrality_graph_regularization Graph regularization centrality
centrality_gravity Gravity centrality
centrality_harary Harary Centrality
centrality_harmonic Harmonic Centrality
centrality_hcc Hybrid characteristic centrality
centrality_heatmap Heatmap, Flow Coefficient, Local Entropy, Weighted h-index, Redundancy
centrality_hide_information Access and Hide Information
centrality_hub HITS Authority and Hub Scores
centrality_hubbell Hubbell Centrality
centrality_hybrid_global_structure Hybrid global structure model centrality
centrality_iec Immediate Effects Centrality
centrality_iira Improved iterative resource allocation (IIRA)
centrality_improved_closeness Improved closeness centrality
centrality_improved_global_structure Improved global structure model centrality
centrality_incloseness Closeness Centrality
centrality_indegree Degree Centrality
centrality_ineccentricity Eccentricity
centrality_information Information Centrality (Stephenson-Zelen)
centrality_inharmonic Harmonic Centrality
centrality_instrength Strength Centrality (Weighted Degree)
centrality_integration Integration Centrality
centrality_ira Iterative resource allocation (IRA)
centrality_katz Katz Centrality
centrality_ked KED method centrality
centrality_kpath Local efficiency, s-core, fragmentation, k-path census and EPC
centrality_kreach Geodesic K-Path Centrality
centrality_lac Local Average Connectivity (LAC)
centrality_laplacian Laplacian Centrality
centrality_leaderrank LeaderRank Centrality
centrality_length_scaled_betweenness Betweenness and closeness variants that carry a tuning parameter
centrality_leverage Leverage Centrality
centrality_lhc Lhc Index
centrality_lin Lin Centrality
centrality_linerank LineRank centrality
centrality_lnc Local neighbor contribution centrality
centrality_load Load Centrality
centrality_lobby Lobby Index (H-Index of Neighborhood)
centrality_localized_bridging Localized bridging centrality from ego betweenness
centrality_local_bridging Local Bridging Centrality
centrality_local_dimension Local Dimension
centrality_local_dimension_fixed Fixed-Radius, Fuzzy and Volume Local Dimensions
centrality_local_efficiency Local efficiency, s-core, fragmentation, k-path census and EPC
centrality_local_entropy Heatmap, Flow Coefficient, Local Entropy, Weighted h-index, Redundancy
centrality_local_information_dimension Local Information Dimensionality
centrality_local_volume_dimension Fixed-Radius, Fuzzy and Volume Local Dimensions
centrality_malatya Malatya centrality
centrality_map_equation Map equation centrality with explicit coding and flow conventions
centrality_markov Markov Centrality
centrality_mcc Maximal clique centrality
centrality_mcgm Multi-characteristics gravity model
centrality_mdd Truss, mixed-degree decomposition and local social-capital measures
centrality_mixed_gravity Mixed gravitational centrality
centrality_mnc Maximum Neighborhood Component (MNC)
centrality_modified_expected_force Modified Expected Force centrality
centrality_modularity_vitality Modularity Vitality
centrality_ncvoterank NCVoteRank
centrality_neighborhood_connectivity Neighborhood Connectivity
centrality_neighbor_distance Neighborhood centrality, and its neighbor distance special case
centrality_ninl Node and Neighbor Layer Information centrality
centrality_node_contraction Node Contraction Centrality (IMC and IIMC)
centrality_node_contraction_improved Node Contraction Centrality (IMC and IIMC)
centrality_outcloseness Closeness Centrality
centrality_outdegree Degree Centrality
centrality_outeccentricity Eccentricity
centrality_outharmonic Harmonic Centrality
centrality_outstrength Strength Centrality (Weighted Degree)
centrality_pagerank PageRank Centrality
centrality_pairwisedis Pairwise Disconnectivity (Potapov et al. 2008)
centrality_participation Participation Coefficient
centrality_percolation Percolation Centrality
centrality_power Bonacich Power Centrality
centrality_prestige_domain Domain Prestige
centrality_prestige_domain_proximity Domain Proximity Prestige
centrality_proximal_betweenness Proximal betweenness centrality
centrality_radiality Radiality Centrality
centrality_random_walk Random Walk Centrality
centrality_random_walk_decay Random walk decay centrality
centrality_reaching_local Local Reaching Centrality (Mones, Vicsek & Vicsek 2012)
centrality_redundancy Heatmap, Flow Coefficient, Local Entropy, Weighted h-index, Redundancy
centrality_relative_entropy Relative-Entropy Integrated Evaluation
centrality_renewed_coreness Weighted k-shell, Renewed Coreness and Geodesic k-path
centrality_residual_closeness Residual Closeness Centrality
centrality_resistance_curvature Node resistance curvature
centrality_rsp_betweenness Randomized Shortest Paths Betweenness Centrality
centrality_rumor Rumor Centrality
centrality_salsa SALSA Authority Centrality
centrality_semilocal Semi-Local Centrality
centrality_shapley_game1 Shapley Value Centrality (Games 1, 2 and 3)
centrality_shapley_game2 Shapley Value Centrality (Games 1, 2 and 3)
centrality_shapley_game3 Shapley Value Centrality (Games 1, 2 and 3)
centrality_single_discount DegreeDiscountIC and SingleDiscount Rankings
centrality_spectralrank SpectralRank with optional diagonal prior information
centrality_strength Strength Centrality (Weighted Degree)
centrality_stress Stress Centrality
centrality_subgraph Subgraph Centrality
centrality_support Truss, mixed-degree decomposition and local social-capital measures
centrality_s_core Local efficiency, s-core, fragmentation, k-path census and EPC
centrality_s_shell s-shell Index
centrality_topological_coefficient Topological Coefficient
centrality_transitivity Local Transitivity (Clustering Coefficient)
centrality_truss Truss, mixed-degree decomposition and local social-capital measures
centrality_trust_pagerank Trust-PageRank
centrality_two_way_rw Two-Way Random Walk Betweenness
centrality_volume Volume centrality
centrality_voterank VoteRank Centrality
centrality_voterank_plus WVoteRank, EnRenew and VoteRank++
centrality_weighted_h_index Heatmap, Flow Coefficient, Local Entropy, Weighted h-index, Redundancy
centrality_weighted_kshell Weighted k-shell, Renewed Coreness and Geodesic k-path
centrality_weighted_leaderrank Weighted LeaderRank centrality
centrality_wiener Wiener Index Centrality
centrality_within_module_z Within-Module Degree Z-Score
centrality_wvoterank WVoteRank, EnRenew and VoteRank++
centrality_x_degree X-degree centrality
centralization Centralization index
cluster_quality Cluster Quality Metrics
cluster_significance Test Significance of Community Structure
cnet Summarize Network by Clusters
coding Human-AI Interaction Coding Sequences
coding_detailed Human-AI Interaction Coding Sequences
cograph Create a Network Visualization
CographLayout CographLayout R6 Class
CographNetwork CographNetwork R6 Class
CographTheme CographTheme R6 Class
color_communities Color Nodes by Community
communities Community Detection
community_consensus Consensus Community Detection
community_edge_betweenness Edge Betweenness Community Detection
community_fast_greedy Fast Greedy Community Detection
community_fluid Fluid Communities Detection
community_infomap Infomap Community Detection
community_label_propagation Label Propagation Community Detection
community_leading_eigenvector Leading Eigenvector Community Detection
community_leiden Leiden Community Detection
community_louvain Louvain Community Detection
community_optimal Optimal Community Detection
community_sizes Get Community Sizes
community_spinglass Spinglass Community Detection
community_walktrap Walktrap Community Detection
compare_communities Compare Community Structures
complement_network Complement of a Network
com_consensus Consensus Community Detection
com_eb Edge Betweenness Community Detection
com_fg Fast Greedy Community Detection
com_fl Fluid Communities Detection
com_im Infomap Community Detection
com_ld Leiden Community Detection
com_le Leading Eigenvector Community Detection
com_lp Label Propagation Community Detection
com_lv Louvain Community Detection
com_op Optimal Community Detection
com_sg Spinglass Community Detection
com_wt Walktrap Community Detection
contract_nodes Contract Nodes into Groups
core_periphery Detect Core-Periphery Structure
cqual Cluster Quality Metrics
csig Test Significance of Community Structure
csum Cluster Summary Statistics

-- D --

degree_distribution Degree Distribution Visualization
detect_communities Detect Communities in a Network
disparity_filter Disparity Filter
disparity_filter.cograph_network Disparity Filter
disparity_filter.default Disparity Filter
disparity_filter.igraph Disparity Filter
disparity_filter.matrix Disparity Filter
disparity_filter.tna Disparity Filter
dispersion Dispersion (Backstrom-Kleinberg 2014)
dyad_census Dyad Census

-- E --

edge_betweenness Calculate Edge Centrality Measures
edge_centrality Calculate Edge Centrality Measures
edge_reciprocity Edge Reciprocity
ego_networks Ego-Network Metrics
estrada_index Estrada Index
extract_interlayer Extract Inter-Layer Block
extract_layer Extract Layer from Supra-Adjacency Matrix
extract_motifs Extract Motifs from Network Data
extract_triads Extract Triads with Node Labels

-- F --

filter_edges Filter Edges by Metadata
filter_nodes Filter Nodes by Metadata or Centrality
fit_degree_distribution Fit Statistical Distributions to Degree Sequence
from_qgraph Convert a qgraph object to cograph parameters
from_tna Convert a tna object to cograph parameters

-- G --

get_data Get Original Data from Cograph Network
get_edges Get Edges from Cograph Network
get_edge_list Extract Raw Edge List from TNA Model
get_groups Get Node Groups from Cograph Network
get_labels Get Labels from Cograph Network
get_layout Get a Registered Layout
get_meta Get Metadata from Cograph Network
get_nodes Get Nodes from Cograph Network
get_shape Get a Registered Shape
get_source Get Source Type from Cograph Network
get_theme Get a Registered Theme
ggplot_robustness Compare Network Robustness (ggplot2)
group_centrality Group Centrality (Everett-Borgatti 1999)

-- H --

hai_datasets Human-AI Interaction Coding Sequences
homophily Attribute Assortativity (Homophily)
htna Plot Heterogeneous TNA Network (Multi-Group Layout)
human_ai Human-AI Interaction Coding Sequences
human_ai_detailed Human-AI Interaction Coding Sequences

-- I --

invert_weights Invert Edge Weights (Similarity to Distance and Back)
is_bipartite Check if a Matrix Could Be Bipartite
is_directed Check if Network is Directed
is_tna_network Check if Network is TNA-based

-- K --

k_shortest_paths Find K Shortest Loopless Paths (Yen's Algorithm)

-- L --

label_abbrev Abbreviate Labels
lagg Aggregate Layers
layer_degree_correlation Degree Correlation Between Layers
layer_similarity Layer Similarity
layer_similarity_matrix Pairwise Layer Similarities
layout_circle Circular Layout
layout_groups Group-based Layout
layout_oval Oval Layout
layout_saqr Saqr Layout (Start/End transition flow)
layout_spring Fruchterman-Reingold Spring Layout
layout_target Target Layout (focal-node, topological)
ldegcor Degree Correlation Between Layers
list_centralities Catalogue of the Centrality Measures
list_layouts List Available Layouts
list_palettes List Available Color Palettes
list_shapes List Available Shapes
list_svg_shapes List Registered SVG Shapes
list_themes List Available Themes
lsim Layer Similarity
lsim_matrix Pairwise Layer Similarities

-- M --

membership Get Community Membership
mlna Multilevel Network Visualization
motifs Network Motif Analysis
motif_census Network Motif Analysis
mtna Multi-Cluster TNA Network Plot
mutate_edges Add or Change Edge Attributes
mutate_nodes Add or Change Node Attributes

-- N --

neighborhood_overlap Neighborhood Overlap (Jaccard) for Each Edge
network_bridges Bridge Edges
network_clique_size Largest Clique Size
network_cut_vertices Cut Vertices (Articulation Points)
network_girth Network Girth (Shortest Cycle Length)
network_global_efficiency Global Efficiency
network_local_efficiency Local Efficiency
network_radius Network Radius
network_rich_club Rich Club Coefficient
network_small_world Small-World Coefficient (Sigma)
network_summary Network-Level Summary Statistics
network_vertex_connectivity Network Vertex Connectivity
network_wrangling Network Wrangling Verbs
nodes Get Nodes from Cograph Network (Deprecated)
normalize_weights Normalize Edge Weights
n_communities Get Number of Communities
n_edges Get Number of Edges
n_nodes Get Number of Nodes

-- O --

overlay_communities Overlay Community Blobs on a Network Plot

-- P --

palettes Color Palettes
palette_blues Blues Palette
palette_colorblind Colorblind-friendly Palette
palette_diverging Diverging Palette
palette_pastel Pastel Palette
palette_rainbow Rainbow Palette
palette_reds Reds Palette
palette_viridis Viridis Palette
panel_layout Configure a custom multi-panel layout
plot.cograph_cluster_significance Plot Cluster Significance
plot.cograph_communities Plot Community Structure
plot.cograph_core_periphery Plot Core-Periphery Structure
plot.cograph_degree_fit Plot method for cograph_degree_fit
plot.cograph_motifs Plot Network Motifs
plot.cograph_motif_analysis Plot Motif Analysis Results
plot.cograph_motif_result Network Motif Analysis
plot.cograph_network Plot cograph_network Object
plot.cograph_rich_club Plot Rich Club Results
plot.cograph_vulnerability Plot Node Vulnerability
plot.netobject_group Plot a Group of Nestimate netobjects
plot.netobject_ml Plot a Multilevel Nestimate netobject
plot.net_bootstrap_group Plot a Group Bootstrap Result
plot.tna_bootstrap Plot Bootstrap Results
plot.tna_disparity Plot Disparity Filter Result
plot_alluvial Plot Alluvial Diagram
plot_bootstrap_forest Forest Plot for Bootstrap Network Results
plot_bootstrap_forest.boot_glasso Forest Plot for Bootstrap Network Results
plot_bootstrap_forest.net_bootstrap Forest Plot for Bootstrap Network Results
plot_bootstrap_forest.net_bootstrap_group Forest Plot for Bootstrap Network Results
plot_bootstrap_forest.tna_bootstrap Forest Plot for Bootstrap Network Results
plot_centrality Plot Centrality
plot_centrality_compare Plot Centrality Comparison
plot_centrality_distribution Plot Centrality Distribution
plot_centrality_heatmap Plot Centrality Heatmap
plot_chord Chord Diagram
plot_compare Plot Network Difference (alias of plot_difference)
plot_comparison_heatmap Plot Comparison Heatmap
plot_degree_correlation Plot Degree-Degree Correlation
plot_difference Plot Network Difference
plot_edge_diff_forest Forest Plot for Bootstrap Edge Differences
plot_edge_diff_forest.boot_glasso Forest Plot for Bootstrap Edge Differences
plot_edge_weights Plot Edge Weight Distribution
plot_group_permutation Plot Group Permutation Test Results
plot_heatmap Plot Network as Heatmap
plot_htna Plot Heterogeneous TNA Network (Multi-Group Layout)
plot_mcml Plot Multi-Cluster Multi-Layer Network
plot_mixed_network Plot Mixed Network
plot_mlna Multilevel Network Visualization
plot_ml_heatmap Multilayer Network Heatmap
plot_motifs Plot a motif/subgraph result
plot_mtna Multi-Cluster TNA Network Plot
plot_netobject_group Plot a Group of Nestimate netobjects
plot_netobject_ml Plot a Multilevel Nestimate netobject
plot_network_evolution Plot Network Evolution (Small Multiples)
plot_net_bootstrap_group Plot a Group Bootstrap Result
plot_net_stability Plot Centrality Stability Results
plot_permutation Plot Permutation Test Results
plot_robustness Plot Network Robustness
plot_simplicial Simplicial Complex Visualization
plot_temporal Temporal Network Prism (3D Glass Box)
plot_tna TNA-Style Network Plot (qgraph Compatible)
plot_trajectories Plot Individual Trajectories
plot_transitions Plot Transitions Between States
print.cograph_communities Print Community Structure
print.cograph_degree_fit Print method for cograph_degree_fit
print.cograph_motifs Network Motif Analysis
print.cograph_motif_analysis Extract Motifs from Network Data
print.cograph_motif_result Network Motif Analysis
print.cograph_network Print cograph_network Object
project_bipartite Project Bipartite Network to One-Mode

-- R --

reaching_global Global Reaching Centrality (Mones, Vicsek & Vicsek 2012)
register_layout Register a Custom Layout
register_shape Register a Custom Shape
register_svg_shape Register Custom SVG Shape
register_theme Register a Custom Theme
regulation_net Learning Regulation Transition Network
remove_edges Remove Edges from a Network
remove_isolates Remove Isolated Nodes
remove_nodes Remove Nodes from a Network
rename_nodes Rename Nodes
render-ggplot ggplot2 Conversion
render-grid Grid Rendering
reorder_nodes Reorder the Nodes of a Network
reverse_edges Reverse Edge Direction
rich_club Rich Club Coefficient
rich_club_local Local Rich Club Score
robustness Network Robustness Analysis
robustness_auc Calculate Area Under Robustness Curve (AUC)
robustness_summary Summary of Robustness Analysis

-- S --

select_bridges Select Bridge Edges
select_component Select Connected Component
select_edges Select Edges with Lazy Computation
select_edges_between Select Edges Between Node Sets
select_edges_involving Select Edges Involving Nodes
select_k_core Select the k-Core of a Network
select_neighbors Select Node Neighbors (Ego Network)
select_nodes Select Nodes with Lazy Centrality Computation
select_top Select Top N Nodes by Centrality
select_top_edges Select Top N Edges
set_edges Set Edges in Cograph Network
set_groups Set Node Groups
set_layout Set Layout in Cograph Network
set_nodes Set Nodes in Cograph Network
shortest_paths Compute Shortest Path Distances
simmelian_strength Simmelian Strength (Triangle Count per Edge)
simplify Simplify a Network
simplify.cograph_network Simplify a Network
simplify.default Simplify a Network
simplify.igraph Simplify a Network
simplify.matrix Simplify a Network
simplify.tna Simplify a Network
sn_edges Set Edge Aesthetics
sn_ggplot Convert Network to ggplot2
sn_layout Apply Layout to Network
sn_nodes Set Node Aesthetics
sn_palette Apply Color Palette to Network
sn_render Plot Cograph Network
sn_save Save Network Visualization
sn_save_ggplot Save as ggplot2
sn_theme Apply Theme to Network
soplot Plot Cograph Network
spanning_tree Minimum or Maximum Spanning Tree
split_components Split a Network into Its Connected Components
splot Plot Nestimate Bootstrap Results
splot.boot_glasso Plot Nestimate Bootstrap Results
splot.cograph_communities Plot Nestimate Bootstrap Results
splot.group_tna_permutation Plot Group Permutation Test Results
splot.netobject Plot Nestimate Bootstrap Results
splot.net_bootstrap Plot Nestimate Bootstrap Results
splot.net_mlvar Plot Nestimate Bootstrap Results
splot.net_permutation Plot Nestimate Bootstrap Results
splot.tna_bootstrap Plot Bootstrap Results
splot.tna_communities Plot Nestimate Bootstrap Results
splot.tna_disparity Plot Disparity Results with splot
splot.tna_permutation Plot Permutation Test Results
splot.wtna_mixed Plot Nestimate Bootstrap Results
student_interactions Student Interaction Edge List
subgraphs Extract Specific Motif Instances (Subgraphs)
subset_edges Filter Edges by Metadata
subset_nodes Filter Nodes by Metadata or Centrality
summarize_clusters Build MCML from Raw Transition Data
summarize_network Summarize Network by Clusters
summary.cograph_network Summary of cograph_network Object
supra Supra-Adjacency Matrix
supra_adjacency Supra-Adjacency Matrix
supra_interlayer Extract Inter-Layer Block
supra_layer Extract Layer from Supra-Adjacency Matrix
symmetrize Symmetrize a Directed Network

-- T --

themes-builtin Built-in Themes
theme_cograph_classic Classic Theme
theme_cograph_colorblind Colorblind-friendly Theme
theme_cograph_dark Dark Theme
theme_cograph_gray Grayscale Theme
theme_cograph_minimal Minimal Theme
theme_cograph_nature Nature Theme
theme_cograph_viridis Viridis Theme
threshold_edges Threshold Edges by Weight, Count, Proportion or Density
to_cograph Convert to Cograph Network
to_data_frame Export Network as Edge List Data Frame
to_df Export Network as Edge List Data Frame
to_directed Convert an Undirected Network to Directed
to_igraph Convert Network to igraph Object
to_matrix Convert Network to Adjacency Matrix
to_network Convert Network to statnet network Object
to_undirected Convert a Directed Network to Undirected
tplot TNA-Style Network Plot (qgraph Compatible)
triad_census Triad Census
trophic_incoherence Trophic Incoherence Parameter

-- U --

unregister_svg_shape Unregister SVG Shape

-- V --

verify_igraph Verify Against igraph
verify_with_igraph Verify Against igraph
vulnerability Node Vulnerability

-- W --

wagg Aggregate Edge Weights