Standardized Processing and Analysis of Thermal Imaging Data in
Animal Studies
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Documentation for package ‘BioThermR’ version 0.1.0
Help Pages
| aggregate_replicates | Aggregate Technical Replicates for Statistical Rigor |
| analyze_thermal_stats | Calculate Comprehensive Thermal Statistics |
| as_EBImage | Convert BioThermR Object to EBImage Object |
| compile_batch_stats | Compile Batch Statistics into a Tidy Data Frame |
| create_BioThermR | Create BioThermR Object from Data |
| from_EBImage | Import EBImage Object into BioThermR |
| load_biothermr | Load BioThermR Data from Disk |
| merge_clinical_data | Merge Thermal Stats with Clinical Data |
| plot_roi_overlap | Visualize ROI Overlap and Dice Coefficient |
| plot_thermal_3d | Interactive 3D Thermal Surface Plot |
| plot_thermal_cloud | Generate a "Thermal Cloud" Visualization (Phyllotaxis Layout) |
| plot_thermal_density | Visualize Temperature Distribution (Density Plot) |
| plot_thermal_heatmap | Visualize Thermal Matrix as 2D Heatmap |
| plot_thermal_montage | Create a Gap-Free Thermal Image Montage |
| read_thermal_batch | Batch Read .raw Files |
| read_thermal_flir | Read FLIR Radiometric JPG File |
| read_thermal_raw | Read a Single .raw Thermal Image File |
| roi_filter_interactive | Interactive ROI Selector with Denoising (Shiny App) |
| roi_filter_threshold | Filter Thermal Image by Temperature Thresholds |
| roi_segment_ebimage | Automated ROI Segmentation via EBImage |
| save_biothermr | Save BioThermR Data Objects to Disk |
| viz_thermal_barplot | Generate Publication-Ready Comparative Barplots |
| viz_thermal_boxplot | Generate Publication-Ready Comparative Boxplots |
| viz_thermal_montage2 | Create a Thermal Image Montage |