Models for Correlation Matrices Based on Graphs
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Documentation for package ‘graphpcor’ version 0.1.25
- DESCRIPTION file
- User guides, package vignettes and other documentation
- Code demos. Use demo() to run them.
Help Pages
| basecor | A base Cholesky model of a correlation matrix |
| basecor-utils | Functions used by/to basecor |
| basecor.matrix | A base Cholesky model of a correlation matrix |
| basecor.numeric | A base Cholesky model of a correlation matrix |
| basepcor | A base precision's Cholesky model for a correlation matrix |
| basepcor-utils | Functions used by/to basepcor |
| basepcor.matrix | A base precision's Cholesky model for a correlation matrix |
| basepcor.numeric | A base precision's Cholesky model for a correlation matrix |
| cgeneric.basecor | Build an 'cgeneric' for a correlation matrix PC-prior. |
| cgeneric.graphpcor | graphpcor: correlation from nodes and edges |
| cgeneric.Matrix | graphpcor: correlation from nodes and edges |
| cgeneric.treepcor | treepcor: correlation from tree |
| cgeneric_graphpcor | Build an 'cgeneric' for a (graph based) correlation matrix PC-prior. |
| cgeneric_LKJ | Build an 'cgeneric' model for the LKG prior on correlation matrix. |
| cgeneric_pc_correl | Build an 'cgeneric' for a correlation matrix PC-prior. |
| cgeneric_treepcor | Build an 'cgeneric' for 'treepcor()') |
| cgeneric_Wishart | Build an 'cgeneric' to implement the Wishart prior for a precision matrix. |
| cholcor | Functions used by/to basecor |
| corr2theta | Functions used by/to basecor |
| dim.graphpcor | graphpcor: correlation from nodes and edges |
| dim.treepcor | treepcor: correlation from tree |
| dLKJ | The LKJ density for a correlation matrix |
| drop1.treepcor | treepcor: correlation from tree |
| dspd | Functions for numerical algorithms |
| dtheta | Internal functions to map between Euclidean and spherical coordinates |
| edges | Retrieve edges of an object |
| edges.default | Retrieve edges of an object |
| edges.graphpcor | Retrieve edges of an object |
| edges.treepcor | Retrieve edges of an object |
| etreepcor2precision | treepcor: correlation from tree |
| etreepcor2variance | treepcor: correlation from tree |
| fillLprec | Functions used by/to basepcor |
| gphcQ | graphpcor: correlation from nodes and edges |
| graphpcor | graphpcor: correlation from nodes and edges |
| graphpcor.character | graphpcor: correlation from nodes and edges |
| graphpcor.formula | graphpcor: correlation from nodes and edges |
| graphpcor.list | graphpcor: correlation from nodes and edges |
| graphpcor.Matrix | graphpcor: correlation from nodes and edges |
| graphpcor.matrix | graphpcor: correlation from nodes and edges |
| hessian.basecor | Functions for numerical algorithms |
| hessian.basepcor | Functions for numerical algorithms |
| hessian.graphpcor | Functions for numerical algorithms |
| internal-utils | Internal functions. |
| KLD10 | Internal functions. |
| Laplacian | The Laplacian of a graph |
| Laplacian.default | The Laplacian of a graph |
| Laplacian.graphpcor | graphpcor: correlation from nodes and edges |
| Laplacian.Matrix | The Laplacian of a graph |
| Laplacian.matrix | The Laplacian of a graph |
| Lprec0 | Functions used by/to basepcor |
| m_iparams_fncheck | Internal functions. |
| numeric-utils | Functions for numerical algorithms |
| param-utils | Internal functions to map between Euclidean and spherical coordinates |
| pcSigmasCheck | Internal functions. |
| plot.graphpcor | graphpcor: correlation from nodes and edges |
| plot.treepcor | treepcor: correlation from tree |
| print.basecor | A base Cholesky model of a correlation matrix |
| print.basepcor | A base precision's Cholesky model for a correlation matrix |
| print.graphpcor | graphpcor: correlation from nodes and edges |
| print.treepcor | treepcor: correlation from tree |
| p_iLtheta_fncheck | Internal functions. |
| rphi2x | Internal functions to map between Euclidean and spherical coordinates |
| rtheta | Internal functions to map between Euclidean and spherical coordinates |
| stan_add | Build/add STAN code/data for the correlation's PC-prior. |
| stan_add_code | Build/add STAN code/data for the correlation's PC-prior. |
| stan_add_graphpcor | Build/add STAN code/data for the correlation's PC-prior. |
| stan_add_pc_correl | Build/add STAN code/data for the correlation's PC-prior. |
| summary.graphpcor | graphpcor: correlation from nodes and edges |
| summary.treepcor | treepcor: correlation from tree |
| tpcQ | treepcor: correlation from tree |
| treepcor | treepcor: correlation from tree |
| vcov.graphpcor | graphpcor: correlation from nodes and edges |
| vcov.treepcor | treepcor: correlation from tree |
| x2rphi | Internal functions to map between Euclidean and spherical coordinates |