# Generated by roxygen2: do not edit by hand

S3method(`[`,bioregion.pairwise.metric)
S3method(as.dist,bioregion.pairwise.metric)
S3method(plot,bioregion.clusters)
S3method(print,bioregion.bioregionalization.metrics)
S3method(print,bioregion.clusters)
S3method(print,bioregion.optimal.n)
S3method(print,bioregion.pairwise.metric)
S3method(print,bioregion.partition.comparison)
S3method(str,bioregion.clusters)
S3method(str,bioregion.optimal.n)
export(betapart_to_bioregion)
export(bioregion_metrics)
export(bioregionalization_metrics)
export(compare_bioregionalizations)
export(cut_tree)
export(dissimilarity)
export(dissimilarity_to_similarity)
export(find_optimal_n)
export(hclu_diana)
export(hclu_hierarclust)
export(hclu_optics)
export(install_binaries)
export(map_bioregions)
export(mat_to_net)
export(net_to_mat)
export(netclu_beckett)
export(netclu_greedy)
export(netclu_infomap)
export(netclu_labelprop)
export(netclu_leadingeigen)
export(netclu_leiden)
export(netclu_louvain)
export(netclu_oslom)
export(netclu_walktrap)
export(nhclu_affprop)
export(nhclu_clara)
export(nhclu_clarans)
export(nhclu_dbscan)
export(nhclu_kmeans)
export(nhclu_pam)
export(similarity)
export(similarity_to_dissimilarity)
export(site_species_metrics)
export(site_species_subset)
import(Rdpack)
import(data.table)
import(mathjaxr)
import(rmarkdown)
importFrom(apcluster,apcluster)
importFrom(apcluster,apclusterK)
importFrom(ape,pcoa)
importFrom(bipartite,computeModules)
importFrom(cluster,diana)
importFrom(cluster,pam)
importFrom(data.table,as.data.table)
importFrom(data.table,chmatch)
importFrom(dbscan,dbscan)
importFrom(dbscan,extractXi)
importFrom(dbscan,kNNdist)
importFrom(dbscan,optics)
importFrom(dynamicTreeCut,cutreeDynamic)
importFrom(fastcluster,hclust)
importFrom(fastkmedoids,fastclara)
importFrom(fastkmedoids,fastclarans)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,theme_bw)
importFrom(graphics,abline)
importFrom(graphics,text)
importFrom(igraph,cluster_fast_greedy)
importFrom(igraph,cluster_label_prop)
importFrom(igraph,cluster_leading_eigen)
importFrom(igraph,cluster_leiden)
importFrom(igraph,cluster_louvain)
importFrom(igraph,cluster_walktrap)
importFrom(igraph,graph_from_data_frame)
importFrom(rlang,.data)
importFrom(sf,st_geometry)
importFrom(stats,as.dist)
importFrom(stats,cophenetic)
importFrom(stats,cor)
importFrom(stats,cutree)
importFrom(stats,kmeans)
importFrom(stats,na.omit)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,separate)
useDynLib(bioregion, .registration=TRUE)
