Robust Linear Mixed Effects Models

Documentation for package ‘robustlmm’ version 3.4-5

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Robust linear mixed effects models

-- A --

asymptoticEfficiency	Compute Asymptotic Efficiencies
asymptoticVariance	Compute Asymptotic Efficiencies

-- B --

bindDatasets	Bind Generated Datasets
bisquarePsi	Default Tukey bisquare psi-function with 'c = 4.685'.

-- C --

caseweightIF	Case-weight (Hampel) influence function of the fixed effects of a fitted 'rlmerMod' object.
chgDefaults	Change default arguments
chgDefaults-method	Change default arguments
coef.rlmerMod	rlmerMod Class
compare	Create comparison charts for multiple fits
confint.rlmerMod	Confidence intervals for the fixed-effect coefficients of an rlmer fit.
cooks.distance.rlmerMod	Per-observation Cook's-distance equivalent for an rlmerMod fit.
cPsi	Classical, Huber and smoothed Huber psi- or rho-functions
createDatasetsFromList	Create Dataset List From List of Data Objects
createRhoFunction	Create Rho-Functions With Custom Tuning Parameter

-- D --

deviance.rlmerMod

rlmerMod Class

-- E --

extractAIC.rlmerMod	rlmerMod Class
extractPredefinedTuningParameter	Extract Tuning Parameters Used In Fitting
extractTuningParameter	Extract Tuning Parameters Used In Fitting

-- F --

family.rlmerMod	rlmerMod Class
findTuningParameter	Compute Asymptotic Efficiencies
fitDatasets	Fitting Functions
fitDatasets_heavyLme	Fitting Functions
fitDatasets_lmer	Fitting Functions
fitDatasets_lmer_bobyqa	Fitting Functions
fitDatasets_lmer_Nelder_Mead	Fitting Functions
fitDatasets_lqmm	Fitting Functions
fitDatasets_rlme	Fitting Functions
fitDatasets_rlmer	Fitting Functions
fitDatasets_rlmer_DAStau	Fitting Functions
fitDatasets_rlmer_DAStau_bisq	Fitting Functions
fitDatasets_rlmer_DAStau_k_0_5	Fitting Functions
fitDatasets_rlmer_DAStau_k_0_5_noAdj	Fitting Functions
fitDatasets_rlmer_DAStau_k_2	Fitting Functions
fitDatasets_rlmer_DAStau_k_2_noAdj	Fitting Functions
fitDatasets_rlmer_DAStau_k_5	Fitting Functions
fitDatasets_rlmer_DAStau_k_5_noAdj	Fitting Functions
fitDatasets_rlmer_DAStau_lmerNoFit	Fitting Functions
fitDatasets_rlmer_DAStau_noAdj	Fitting Functions
fitDatasets_rlmer_DAStau_sizeOBR	Fitting Functions
fitDatasets_rlmer_DASvar	Fitting Functions
fitDatasets_rlmer_ransac	Fitting Functions
fitDatasets_rlmer_ransac_bisq	Fitting Functions
fitDatasets_varComprob	Fitting Functions
fitDatasets_varComprob_compositeS	Fitting Functions
fitDatasets_varComprob_compositeS_2SGS	Fitting Functions
fitDatasets_varComprob_compositeS_OGK	Fitting Functions
fitDatasets_varComprob_compositeTau	Fitting Functions
fitDatasets_varComprob_compositeTau_2SGS	Fitting Functions
fitDatasets_varComprob_compositeTau_OGK	Fitting Functions
fitDatasets_varComprob_S	Fitting Functions
fitDatasets_varComprob_S_2SGS	Fitting Functions
fitDatasets_varComprob_S_OGK	Fitting Functions
fitted.rlmerMod	rlmerMod Class
fixef.rlmerMod	rlmerMod Class
formula.rlmerMod	rlmerMod Class

-- G --

generateAnovaDatasets	Generate ANOVA type datasets
generateLongitudinalDatasets	Generate Longitudinal Datasets
generateMixedEffectDatasets	Generate Mixed Effects Datasets
generateSensitivityCurveDatasets	Generate Datasets To Create Sensitivity Curves
getInfo	Create comparison charts for multiple fits
getInfo.lmerMod	Create comparison charts for multiple fits
getInfo.rlmerMod	Create comparison charts for multiple fits
getME	Extract or Get Generalize Components from a Fitted Mixed Effects Model
getME.rlmerMod	Extract or Get Generalize Components from a Fitted Mixed Effects Model

-- H --

huberPsiRcpp

Classical, Huber and smoothed Huber psi- or rho-functions

-- I --

implicitIF_full	Full implicit influence function (beta, u, sigma, theta) for a fitted 'rlmerMod' object.
influence.rlmerMod	Per-observation influence on (\hat{beta}, \hat{sigma}, \hat{theta}) for an rlmerMod fit.
isGLMM.rlmerMod	rlmerMod Class
isLMM.rlmerMod	rlmerMod Class
isNLMM.rlmerMod	rlmerMod Class
isREML.rlmerMod	rlmerMod Class

-- L --

lapplyDatasets	Lapply for generated datasets
lmerNoFit	Robust Scoring Equations Estimator for Linear Mixed Models
loadAndMergePartialResults	Load And Merge Partial Results
logLik.rlmerMod	rlmerMod Class

-- M --

makeBisquarePsi	Bisquare (Tukey biweight) psi function
mergeProcessedFits	Merge Processed Fits
model.frame.rlmerMod	rlmerMod Class
model.matrix.rlmerMod	rlmerMod Class

-- N --

nobs.rlmerMod

rlmerMod Class

-- P --

partialMoment_standardNormal	Compute Partial Moments
plot-method	Plot an Object of the "Psi Function" Class
plot-methods	Plot an Object of the "Psi Function" Class
plot.rlmerMod	Plot Method for "rlmerMod" objects.
plotLongitudinalBySubject	Plot longitudinal data with robustness-weight colored lines
predict.rlmerMod	Predictions and confidence/prediction intervals for an rlmerMod fit.
prepareMixedEffectDataset	Prepare Dataset for Parametric Bootstrap
print.rlmerMod	rlmerMod Class
print.rlmerMod_plots	Plot Method for "rlmerMod" objects.
print.summary.rlmer	rlmerMod Class
print.VarCorr.rlmerMod	rlmerMod Class
print.xtable.comparison.table	Create comparison charts for multiple fits
processDatasetsInParallel	Process Datasets in Parallel
processFile	Process File of Stored Datasets
processFit	Process Fitted Objects
processFit.heavyLme	Process Fitted Objects
processFit.lmerMod	Process Fitted Objects
processFit.lqmm	Process Fitted Objects
processFit.rlme	Process Fitted Objects
processFit.rlmerMod	Process Fitted Objects
processFit.varComprob	Process Fitted Objects
psi-functions	Classical, Huber and smoothed Huber psi- or rho-functions
psi2propII	Convert to Proposal 2 weight function
psi2propII,Rcpp_SmoothPsi	Convert to Proposal 2 weight function
psi2propII-method	Convert to Proposal 2 weight function
PsiFunction	Classical, Huber and smoothed Huber psi- or rho-functions

-- R --

ranef.rlmerMod	rlmerMod Class
ransac_lme4	RANSAC initial estimator for LMM
resid.rlmerMod	rlmerMod Class
residuals.rlmerMod	Get residuals
rlmer	Robust Scoring Equations Estimator for Linear Mixed Models
rlmerMod-class	rlmerMod Class
rlmer_ransac	rlmer with RANSAC initial estimator
robustlmm	Robust linear mixed effects models

-- S --

saveDatasets	Save datasets
shortenLabelsKS2022	Shorten Labels
show	Other methods
show-method	Other methods
show-method	rlmerMod Class
show.rlmerMod	rlmerMod Class
show.summary.rlmerMod	rlmerMod Class
sigma.rlmerMod	rlmerMod Class
SmoothPsi	Classical, Huber and smoothed Huber psi- or rho-functions
smoothPsi	Classical, Huber and smoothed Huber psi- or rho-functions
splitDatasets	Split Datasets Into Chunks
summary.rlmerMod	rlmerMod Class
summary.summary.rlmerMod	rlmerMod Class

-- T --

terms.rlmerMod	rlmerMod Class
theta	Extract or Get Generalize Components from a Fitted Mixed Effects Model

-- U --

update.rlmerMod

rlmerMod Class

-- V --

VarCorr.rlmerMod	rlmerMod Class
VarCorr.summary.rlmerMod	rlmerMod Class
vcov.rlmerMod	Variance-covariance matrix of the fixed effects of an rlmerMod fit.
vcov.summary.rlmerMod	rlmerMod Class
vcov_sandwich	Robust cluster-sandwich covariance of the fixed effects of a fitted 'rlmerMod' object.
viewCopyOfSimulationStudy	Access Simulation Study Code

-- W --

weights.rlmerMod

rlmerMod Class

-- X --

xtable.comparison.table

Create comparison charts for multiple fits