Enhancing Data Quality of Biogeographic Ranges with Application for Marine Invertebrates

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Documentation for package ‘EcoCleanR’ version 1.0.3

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

decimal_places	Get Decimal Places of Coordinate Values
distance_calc	Calculate geographic distance and mahalanobis distance to estimate outlier probability of a data point
ecodata	dataset1: Documentation of data file - ecodata.rda
ecodata_cleaned	dataset4: Documentation of data file - ecodata_cleaned.rda
ecodata_corrected	dataset2: Documentation of data file - ecodata_corrected.rda
ecodata_with_outliers	dataset3: Documentation of data file - ecodata_with_outliers.rda
ecodata_x	dataset5: Documentation of data file - ecodata_x.rda
ec_db_merge	Merge the Data sets Extracted from Various datasources.
ec_extract_env_layers	Extract the Environmental data
ec_filter_by_uncertainty	Flag the Occurrences those has Extreme Uncertainty Error Radius
ec_flag_non_east_atlantic	Flag the occurrences those are not in east Atlantic and are inland
ec_flag_non_east_pacific	Flag occurrences those are not in east Pacific and are inland
ec_flag_non_region	Flag Occurrences those are in wrong ocean basins and are inland
ec_flag_non_west_atlantic	Flag Occurrences those are not in west Atlantic and are inland
ec_flag_non_west_pacific	Flag occurrences those are not in east Pacific and are inland
ec_flag_outlier	Flag Outlier Occurrences - using Spatial and Non-spatial Attributes
ec_flag_precision	Flag occurrences those has bad precision
ec_flag_with_locality	Filter records to georeference using GEOLocate
ec_geographic_map	Map view of occurrence data points
ec_geographic_map_w_flag	Map view to visualize data points with outlier probability 0 to 1 on a map view
ec_impute_env_values	Impute Environmental Variables using Mean Values of occurrences within a certain radius
ec_merge_corrected_coordinates	Merge the Update Georeferenced Occurrence Points back to the Main Data File.
ec_plot_distance	Scatter Plot between geo_distance vs maha_distance with geo- and maha- Quantile Threshold to Demonstrate the Outliers outside those threshold.
ec_plot_var_range	Plot cleaned data overlay overall occurrence data to demonstrate accepted ranges of spatial and non-spatial attributes
ec_rm_duplicate	Remove Duplicate Records from the Merged Data
ec_rm_duplicate_occurid	Remove Duplicate Records from the Merged Data based on occurrenceID
ec_trail_zero	Trail Zeros from the Coordinate Values
ec_var_summary	A Summary Table of Final Cleaned Spatial and Environmental Variables
ec_worms_synonym	Check Accepted Synonyms from WoRMs Taxonomy
example_sp_invertebase	dataset6: Documentation of data file - example_sp_invertebase.rda
haversine_kmeans	Calculate Harversine distance