HaDeX2-package	HaDeX2-package
add_stat_dependency	add_stat_dependency
alpha_dat	alpha_dat
calculate_aggregated_diff_uptake	calculate_aggregated_diff_uptake
calculate_aggregated_test_results	calculate_aggregated_test_results
calculate_aggregated_uptake	calculate_aggregated_uptake
calculate_auc	calculate_auc
calculate_back_exchange	calculate_back_exchange
calculate_confidence_limit_values	calculate_confidence_limit_values
calculate_diff_uptake	calculate_diff_uptake
calculate_exp_masses	calculate_exp_masses
calculate_exp_masses_per_replicate	calculate_exp_masses_per_replicate
calculate_kinetics	calculate_kinetics
calculate_MHP	calculate_MHP
calculate_peptide_kinetics	calculate_peptide_kinetics
calculate_p_value	calculate_p_value
calculate_state_uptake	calculate_state_uptake
create_aggregated_diff_uptake_dataset	create_aggregated_diff_uptake_dataset
create_aggregated_uptake_dataset	create_aggregated_uptake_dataset
create_control_dataset	create_control_dataset
create_diff_uptake_dataset	create_diff_uptake_dataset
create_kinetic_dataset	create_kinetic_dataset
create_overlap_distribution_dataset	create_overlap_distribution_dataset
create_p_diff_uptake_dataset	create_p_diff_uptake_dataset
create_p_diff_uptake_dataset_with_confidence	create_p_diff_uptake_dataset_with_confidence
create_quality_control_dataset	create_quality_control_dataset
create_replicate_dataset	create_replicate_dataset
create_state_comparison_dataset	create_state_comparison_dataset
create_state_uptake_dataset	create_state_uptake_dataset
create_uptake_dataset	create_uptake_dataset
get_n_replicates	get_n_replicates
get_peptide_sequence	get_peptide_sequence
get_protein_coverage	get_protein_coverage
get_protein_redundancy	get_protein_redundancy
get_replicate_list_sd	get_replicate_list_sd
get_residue_positions	get_residue_positions
get_structure_color	get_structure_color
HaDeX2	HaDeX2-package
HaDeXify	HaDeXify
HaDeX_GUI	HaDeX_GUI
hdx_data	hdx_data
install_GUI	install_GUI
is_GUI_installed	is_GUI_installed
new_hdx_data	new_hdx_data
plot_aggregated_differential_uptake	plot_aggregated_differential_uptake
plot_aggregated_uptake	plot_aggregated_uptake
plot_aggregated_uptake_structure	plot_aggregated_uptake_structure
plot_amino_distribution	plot_amino_distribution
plot_butterfly	plot_butterfly
plot_chiclet	plot_chiclet
plot_coverage	plot_coverage
plot_coverage_heatmap	plot_coverage_heatmap
plot_differential	plot_differential
plot_differential_butterfly	plot_differential_butterfly
plot_differential_chiclet	plot_differential_chiclet
plot_differential_uptake_curve	plot_differential_uptake_curve
plot_manhattan	plot_manhattan
plot_overlap	plot_overlap
plot_overlap_distribution	plot_overlap_distribution
plot_peptide_charge_measurement	plot_peptide_charge_measurement
plot_peptide_mass_measurement	plot_peptide_mass_measurement
plot_position_frequency	plot_position_frequency
plot_quality_control	plot_quality_control
plot_replicate_histogram	plot_replicate_histogram
plot_replicate_mass_uptake	plot_replicate_mass_uptake
plot_state_comparison	plot_state_comparison
plot_uncertainty	plot_uncertainty
plot_uptake_curve	plot_uptake_curve
plot_volcano	plot_volcano
prepare_hdxviewer_export	prepare_hdxviewer_export
read_hdx	read_hdx
reconstruct_sequence	reconstruct_sequence
show_aggregated_uptake_data	show_aggregated_uptake_data
show_coverage_heatmap_data	show_coverage_heatmap_data
show_diff_uptake_data	show_diff_uptake_data
show_diff_uptake_data_confidence	show_diff_uptake_data_confidence
show_overlap_data	show_overlap_data
show_peptide_charge_measurement	show_peptide_charge_measurement
show_peptide_mass_measurement	show_peptide_mass_measurement
show_p_diff_uptake_data	show_p_diff_uptake_data
show_quality_control_data	show_quality_control_data
show_replicate_histogram_data	show_replicate_histogram_data
show_summary_data	show_summary_data
show_uc_data	show_uc_data
show_uptake_data	show_uptake_data
update_hdexaminer_file	update_hdexaminer_file
validate_hdx_data	validate_hdx_data
