Integrative Bayesian Multiple Regression for Multi-Platform Biomarkers

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Documentation for package ‘IntegMultiReg’ version 0.1.3

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as.data.frame.imr_data Convert IMR Data to an Availability Data Frame
coef.imr Marginal Posterior Inclusion Probabilities of an IMR Fit
coef.imr_posterior Summarize Regression Posterior Draws
coef_imr Marginal Posterior Inclusion Probabilities of an IMR Fit
compare_imr Compare Fitted IMR Models
confint.imr Credible Intervals for an IMR Fit
confint.imr_posterior Summarize Regression Posterior Draws
cv_imr Cross-Validated Predictive Accuracy of an IMR Fit
imr Fit the Integrative Bayesian Multi-Platform Regression Model
imr.default Fit the Integrative Bayesian Multi-Platform Regression Model
imr.formula Fit the Integrative Bayesian Multi-Platform Regression Model
imr.imr_data Fit the Integrative Bayesian Multi-Platform Regression Model
imr_data Validated Multi-Platform Data for IMR
imr_posterior_methods Summarize Regression Posterior Draws
kircIMR Reduced TCGA-KIRC Multi-Platform Survival Example
plot.imr Plot Method for IMR Fits
plot_imr Plot Method for IMR Fits
plot_subgroup_sizes Plot the Availability Subgroup Sizes of an IMR Fit
plot_top_features Plot the Top Selected Features of an IMR Fit
posterior_draws Sample Regression Coefficients and Residual Variances
posterior_summary Posterior Uncertainty Summary for an IMR Fit
posterior_summary.imr Posterior Uncertainty Summary for an IMR Fit
predict.imr Predict Outcomes for New Subjects
predict.imr_posterior Predict Using Coefficient Posterior Draws
predict_imr Predict Outcomes for New Subjects
print.imr Print Method for IMR Fits
print.imr_posterior Summarize Regression Posterior Draws
print.summary.imr Summarize an IMR Fit
simIMR Simulated Multi-Platform Example Data
summary.imr Summarize an IMR Fit
summary.imr_posterior Summarize Regression Posterior Draws
summary_imr Summarize an IMR Fit
validate_imr Validate a Fitted IMR Model
validate_imr_data Validate an IMR Data Object