combine.morpho          Combine Two Morpho Objects
convergent_evol         Determines the number of convergently evolved
                        traits
find_path_to_tip        Determines the route (nodes and branches) for a
                        tip in a phylogenetic tree
get.convergent          Identify convergent traits
get.matrix              Get Specific Morphological Matrix
get.reconstructed       Add reconstructed tree and matrix to morpho
                        object
get.transitions         Get Tranisition History
get_gamma_rates         Get discrete gamma rates
get_lognormal_rates     Get discrete log-normal rates
morpho                  Morpho object
morpho_data             Example morpho dataset
morphsim_fossilsim      Match sampled ancestor labels
plot.morpho             Plot full evolutionary history
plotMorphoGrid          Plots morphological matrix
reconstruct.matrix      Get reconstructed matrix
reconstruct.tree        Color branches for plotting a reconstructed
                        tree
sim.missing.data        Remove morphological character data
sim.morpho              Simulate characters along branches in a tree
stats.morpho            Calculates statistics for a morpho object
symmetric.Q.matrix      Generate a symmetric Q matrix
write.morpho            Write morpho data to file
write.recon.matrix      Write reconstructed character matrix to file
write.recon.tree        Write reconstructed tree to file
write.recon.tsv         Write the taxa ages of reconstructed tree
write.tsv               Write the taxa ages
