Identify Differential Selection

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Documentation for package ‘diffdriver’ version 0.1.7

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

ddmcode	Add intercept, if have functtypecode, then code and move to the front. different from driverMAPS! only allows functtypecode =7 ||8 when functypecode is included in selectvars.
ddmodel	diffDriver model
ddmodel_binary	diffDriver model only for binary phenotype.
ddmodel_binary_simple	diffDriver model only for binary phenotype, assuming bmr the same across samples.
diffdriver	Run diffDriver with Input Files
genebinom	gene level binomial test
genefisher	gene level fisher's exact test
genelr	gene level logistic regression
mlr	gene level multiple linear regression
mlr.v2	gene level multiple linear regression, correcting for total number of mutations
optifix	optifix. Optimise with fixed parameters
plot_mut	plot phenotype, mutation and annotation for a gene across samples