3346b6cddab9af9ea19e9b68f877210f *DESCRIPTION
918a02ae4095a0c05b8ffba1698bafda *LICENSE
a0f229b12896eda9851746488b47f64f *NAMESPACE
2b7f2d2eedda630b4f4c69c9161f37d5 *NEWS.md
e0ad37543929dce690d4ec0e03616aca *R/addin_handler.R
20e0cdb9c7049514cbdc602bc00ff1d1 *R/check_PSAstability.R
e4337e5488965a9d39b20e6ab49074a8 *R/check_init.R
312b2e6a80131575c7a05fb4d4870c68 *R/check_markov_trace.R
04a6ce3e5e1a129f1c0c90f9480ede7b *R/check_trans_probs.R
075ca8da6df5d5766126c4d385d7781e *R/cheers_checker.R
e836330da69def29301cba64cfd32008 *R/get_foo_coverage.R
c717809ba38150084050d8a4f454dc7d *R/project_visualiser.R
951e19a927c7fd848f8dad651cf023f3 *R/summarise_function_with_LLM.R
e00a7b419dff6e5d1c57e0aef4bc74de *R/test_finder.R
c08b1133e2561c5a99d2544fa9d8d2b1 *R/utils-file.R
479edb2ca6dcad7d02201289775531a3 *R/utils-string.R
a29eb66e6b1d41011f36c3aeda0c5703 *README.md
4e340d8aacc5973f362c3ca694d7f9a0 *inst/example_script/create_markov_trace.R
35d289032b446fb65ae2906c9e444c95 *inst/example_script/define_transition_matrix.R
7efc520c47c6d20316110ef8f2581ab8 *inst/example_script/example_script.R
522f0b25a4a0715f3e51b853ee35903f *inst/extdata/example_external_function/R/external_dependency.R
073e5702e84ab452abe4b926c0c7454f *inst/extdata/example_notests/R/foo1.R
9670bdebf067aaf58b039201a455e0da *inst/extdata/example_notests/R/foo2.R
db01c3ff050e84dae90da1674c1d6da7 *inst/extdata/example_notests/tests/testthat.R
d34d57f82ae1e156fb594850d28fc2ff *inst/extdata/example_notests/tests/testthat/test-foo1.R
d34d57f82ae1e156fb594850d28fc2ff *inst/extdata/example_notests/tests/testthat/test-foo2.R
3b6408c0355719f03f83d18cb5490519 *inst/extdata/example_project/R/calculate_QALYs.R
fc3bbc3e2f17ff3c8e915304f196717c *inst/extdata/example_project/R/calculate_costs.R
841cf647796cf6877049f5471b3ca39d *inst/extdata/example_project/R/calculate_discounting_weights.R
4e340d8aacc5973f362c3ca694d7f9a0 *inst/extdata/example_project/R/create_markov_trace.R
35d289032b446fb65ae2906c9e444c95 *inst/extdata/example_project/R/define_transition_matrix.R
6789cb1548f0fa84064b6ba8fd4ff67a *inst/extdata/example_project/R/run_sickSicker_model.R
0bdeea2b221dee4aa11d0e92b1ad78a7 *inst/extdata/example_project/R/utils.R
d78b12f0f45efa78a1e5e3837fdb4560 *inst/extdata/example_project/data/dummy_sickSickerModel_params.rds
7f1397a7fd280cc91f5ec25498537da4 *inst/extdata/example_project/model.R
cef34e1af18a13a97c18e5729b528e7f *inst/extdata/example_project/tests/testthat.R
b700048a8104a725658b67eacb3d697e *inst/extdata/example_project/tests/testthat/fixtures/make-useful-things.R
f3bac3c66ed8d0d46f6a2ec073e12e05 *inst/extdata/example_project/tests/testthat/fixtures/useful_thing1.rds
5bde2621d33bec660d69f9fdfc724586 *inst/extdata/example_project/tests/testthat/test-calculate_QALYs.R
b57bc29abe381210cecf491cad62278a *inst/extdata/example_project/tests/testthat/test-calculate_costs.R
090375c9859aba064fdf4776e82e64d2 *inst/extdata/example_project/tests/testthat/test-calculate_discounting_weights.R
68160b375251d18325f9068df1dec195 *inst/extdata/example_project/tests/testthat/test-create_Markov_trace.R
0bd0a53ba06d3e9df2ade4290728bd49 *inst/extdata/example_project/tests/testthat/test-define_transition_matrix.R
b41df512842551aca3e99f861a93cc4e *inst/extdata/example_project/tests/testthat/test-run_sickSicker_model.R
2b9b09a9ea76eef91e0bd7a998adb3d1 *inst/extdata/example_project/tests/testthat/test-utility_functions_with_different_name.R
4e340d8aacc5973f362c3ca694d7f9a0 *inst/extdata/example_scripts/create_markov_trace.R
35d289032b446fb65ae2906c9e444c95 *inst/extdata/example_scripts/define_transition_matrix.R
078e94aecf665599b31736b02ccf5b7e *inst/extdata/example_scripts/example_script.R
b38338257519ae8dc54cb4e612c8f3f4 *inst/extdata/example_scripts/example_tricky_functions.R
cdaf1f4d2a801b556d669348ea786759 *inst/extdata/example_scripts/no_funcs.R
6cad65624283b7128a4dd549288652f8 *inst/rstudio/addins.dcf
f5c4b4180684a926ee5d3c05be059c68 *inst/system_prompt.md
19fcf0619f90458252ad8d77140fbb4b *man/assertHE_example.Rd
02fa6cdc04e6ea6cbc2b521d7f79c208 *man/check_init.Rd
6cd81b4fe8f06805ddf0a6ba1d14c253 *man/check_markov_trace.Rd
d99743e2af2b3123001c0c45b030eb75 *man/check_trans_prob_array.Rd
c6f8c3af2b9b7a4b0ef62da44c6b643d *man/check_trans_prob_mat.Rd
c692c91103fa4569790c3077be429998 *man/create_prompt.Rd
0f0b3535cea4a1ca7a719651447484ea *man/define_app_server.Rd
ef420499131f51a0492858452d9a6240 *man/define_app_ui.Rd
f3489b505fec544addb8c791dc38f988 *man/dot-called_by.Rd
75df32aaef84b860aab3bdda92ab59a6 *man/dot-parse_function.Rd
eca9ac89e3548837ca70af6e492fb7e1 *man/extract_function_name.Rd
502a5f8dd6ba90060101596366cb7d58 *man/figures/README-pressure-1.png
d49f0f489d3f95acd7c26145357fd089 *man/find_files.Rd
9f710b2a89c17c3a67883c5ad55a8691 *man/find_folder_function_definitions.Rd
2b86ea33cd3a22ac150a16217c21766c *man/find_function_calls_in_file.Rd
a3acd582254dc1c3f008ce0f46b95cdb *man/find_function_calls_in_folder.Rd
6cd3dcc0b52113938538f3509f927812 *man/find_function_definitions.Rd
a34833bbf2c5decff440ea46f3021c4a *man/find_next_vector_element.Rd
d27442a2bbf84c447e7b48243fed5fd0 *man/find_previous_vector_element.Rd
859f91cbd87483494fc70084ec892c51 *man/get_active_functions.Rd
9f75272281aabc76712544c9edb90fcd *man/get_file_cheers_classifications.Rd
369f4fb0a0ce68a9abc2f4ed93385cc0 *man/get_folder_cheers_classifications.Rd
6f2be7fe27545dc34e1614f59a5f9d65 *man/get_foo_coverage.Rd
0ce53159be056e137c8532d9762a8b16 *man/get_function_data.Rd
2e717abe927bb199e16067f5be69930e *man/get_function_line.Rd
1938e899c1cf89845a4ede5a94e4ba77 *man/get_function_path.Rd
82954eeffd49b63a03d2db5c0a373433 *man/get_isolated_foo.Rd
3502041cd5adc6edd90dd44ba450b1a3 *man/get_roxygen_description.Rd
84b06e266f3d6180b5580de5a098e5f7 *man/get_roxygen_description_from_foo.Rd
4b4ee2906ae81f805201cfc1c6bf643b *man/identify_dependencies.Rd
41502299923b5eb04e1000609e740c86 *man/locate_funcs.Rd
593fa35d89bb66d592de4aa410ff57c9 *man/make_closable_tab.Rd
53a130ecc01bb3cdc5c9fa618cca11a8 *man/plotNetwork.Rd
c8678fe4e63612a2bcd600a7028c212a *man/plot_PSA_stability.Rd
44c7708540e42fd02798880006bcc79a *man/processNodes.Rd
3fdbd50afa1db34ed3f36e99bb57f402 *man/return_message.Rd
7e17c124f6541cbd6908f89e289cdc5a *man/run_shiny_app.Rd
4c2160dcee430ee605c98c50e56b8b76 *man/source_funcs.Rd
3dc22b6c5aa81bc2e7a21fe6372c3a63 *man/source_lines.Rd
8247e2d8f67d5255c3c2d1c5d81df83f *man/summarise_function_from_arguments_and_body.Rd
4cdbd3782c10918360ce162fbb0572df *man/summarise_function_with_LLM.Rd
8163c52b5db7a8aed1e38b247271e648 *man/summarise_model.Rd
61f3776b35ad0cc25e440bf72b6eb3ff *man/visualise_project.Rd
607edbeea7d2b69aae93d4210b984b0b *man/wrap_string.Rd
f8507c1ae5521b4fcf1097e78956bf0c *tests/testthat.R
522f0b25a4a0715f3e51b853ee35903f *tests/testthat/example_external_function/R/external_dependency.R
073e5702e84ab452abe4b926c0c7454f *tests/testthat/example_notests/R/foo1.R
9670bdebf067aaf58b039201a455e0da *tests/testthat/example_notests/R/foo2.R
db01c3ff050e84dae90da1674c1d6da7 *tests/testthat/example_notests/tests/testthat.R
d34d57f82ae1e156fb594850d28fc2ff *tests/testthat/example_notests/tests/testthat/test-foo1.R
d34d57f82ae1e156fb594850d28fc2ff *tests/testthat/example_notests/tests/testthat/test-foo2.R
3b6408c0355719f03f83d18cb5490519 *tests/testthat/example_project/R/calculate_QALYs.R
fc3bbc3e2f17ff3c8e915304f196717c *tests/testthat/example_project/R/calculate_costs.R
841cf647796cf6877049f5471b3ca39d *tests/testthat/example_project/R/calculate_discounting_weights.R
4e340d8aacc5973f362c3ca694d7f9a0 *tests/testthat/example_project/R/create_markov_trace.R
35d289032b446fb65ae2906c9e444c95 *tests/testthat/example_project/R/define_transition_matrix.R
6789cb1548f0fa84064b6ba8fd4ff67a *tests/testthat/example_project/R/run_sickSicker_model.R
0bdeea2b221dee4aa11d0e92b1ad78a7 *tests/testthat/example_project/R/utils.R
d78b12f0f45efa78a1e5e3837fdb4560 *tests/testthat/example_project/data/dummy_sickSickerModel_params.rds
7f1397a7fd280cc91f5ec25498537da4 *tests/testthat/example_project/model.R
cef34e1af18a13a97c18e5729b528e7f *tests/testthat/example_project/tests/testthat.R
b700048a8104a725658b67eacb3d697e *tests/testthat/example_project/tests/testthat/fixtures/make-useful-things.R
f3bac3c66ed8d0d46f6a2ec073e12e05 *tests/testthat/example_project/tests/testthat/fixtures/useful_thing1.rds
5bde2621d33bec660d69f9fdfc724586 *tests/testthat/example_project/tests/testthat/test-calculate_QALYs.R
b57bc29abe381210cecf491cad62278a *tests/testthat/example_project/tests/testthat/test-calculate_costs.R
090375c9859aba064fdf4776e82e64d2 *tests/testthat/example_project/tests/testthat/test-calculate_discounting_weights.R
68160b375251d18325f9068df1dec195 *tests/testthat/example_project/tests/testthat/test-create_Markov_trace.R
0bd0a53ba06d3e9df2ade4290728bd49 *tests/testthat/example_project/tests/testthat/test-define_transition_matrix.R
b41df512842551aca3e99f861a93cc4e *tests/testthat/example_project/tests/testthat/test-run_sickSicker_model.R
2b9b09a9ea76eef91e0bd7a998adb3d1 *tests/testthat/example_project/tests/testthat/test-utility_functions_with_different_name.R
4e340d8aacc5973f362c3ca694d7f9a0 *tests/testthat/example_scripts/create_markov_trace.R
35d289032b446fb65ae2906c9e444c95 *tests/testthat/example_scripts/define_transition_matrix.R
078e94aecf665599b31736b02ccf5b7e *tests/testthat/example_scripts/example_script.R
b38338257519ae8dc54cb4e612c8f3f4 *tests/testthat/example_scripts/example_tricky_functions.R
cdaf1f4d2a801b556d669348ea786759 *tests/testthat/example_scripts/no_funcs.R
e861c84ed408ca8cac8e171b28d57158 *tests/testthat/model_summary.docx
085ee68e46198209dc1cd036cc86bb8e *tests/testthat/test-check_PSAstability.R
b3d49244a3141603e2b063f1fb8eb207 *tests/testthat/test-check_functions.R
902658c20e5e9596369f3c94bd4a6952 *tests/testthat/test-check_init.R
636bef5c10cefa3be11f4985a4243656 *tests/testthat/test-check_markov_trace.R
d9e83a6efd6decf4c83f684764f2a807 *tests/testthat/test-check_trans_probs.R
cc9a701a95bad4cf3f7baf88612f7c91 *tests/testthat/test-cheers_checker.R
961d5c8679217ed91aeedec18aecef4e *tests/testthat/test-get_foo_coverage.R
5b99ed100fa007fc8857c6e199ed8ae7 *tests/testthat/test-project_visualiser.R
33c1cd7b739c3811646e742aaf1ef477 *tests/testthat/test-test_finder.R
