cbf72262f04f39aa9f47ff1079af013d *DESCRIPTION
207614739c5be8249ffc4161ee08d3ff *NAMESPACE
3316f4f89738a1789a5518151310e739 *NEWS.md
e7c23f13ee6af763f1fb0e93981097bd *R/A_selected.R
bd0beaa6e4559aad5a7a3f0edb953f88 *R/AngGym.R
b2eaea58df2591c2b0ff98c462610f37 *R/agf.R
7b70ec0dd1402e3f3d86f66c17df17b1 *R/ancillary.R
3e3adec37c73ec834f193dcf1cadd928 *R/orth.R
7bf76d699b0c6afd5430706d045261ef *R/parseRec.R
a0b98163959d217adb67fd2e1e1318b9 *R/sdf.R
08d3728ea83479fc2cfc5902ead64f1e *R/selected_tr.R
6827d31a6eccd2751205b20d997efec9 *README.md
7f63b46d8a1514ddd96e33bb94d866d7 *build/vignette.rds
7b26105230438452d6891d99950e6f98 *data/A_selected.rda
3e8f6a80960bf71a308dd14aaab0b129 *data/AngGym.rda
c493977cd1ea23f113dfe7c0c3ec8c57 *data/agf.rda
7706c70e833da716e3f102c8038ce374 *data/sdf.rda
c9c12b4c390f2d97a5b0abe38c5505d3 *data/selected_tr.rda
d01fe6524e66900a929d9058f56d54bf *inst/doc/Orthology-Beyond-GS.R
51b646d53a834475e116934095b46752 *inst/doc/Orthology-Beyond-GS.Rmd
a0139e133981b4f64b0b088453093874 *inst/doc/Orthology-Beyond-GS.html
996199bf7d303c8104d26780e11fcb54 *inst/doc/Performing-Sequence-Alignment-in-R.R
347f644393d6e9fdc920847cb8ea6345 *inst/doc/Performing-Sequence-Alignment-in-R.Rmd
1eac418eeaed9fac6cddfee250700149 *inst/doc/Performing-Sequence-Alignment-in-R.html
1d2ef54bb63eb435f3316bcea57191f6 *inst/doc/Searching-for-Orthologous.R
f24bded542de704c47c72f9f0e0df3b9 *inst/doc/Searching-for-Orthologous.Rmd
1add5684b34b07075144391faf77c6fd *inst/doc/Searching-for-Orthologous.html
6b96364cd5ea2c6e115651655a9b3e3f *inst/doc/Unraveling-the-Hiden-Paralogs.R
e0c97d3c2298592a2ed68cb7b9b73503 *inst/doc/Unraveling-the-Hiden-Paralogs.Rmd
ccb0716ab23b107c0202706513d7043e *inst/doc/Unraveling-the-Hiden-Paralogs.html
e6795a0c15e54db1ef52f07fa0a6f311 *inst/extdata/MyRec
ac88fd8c4b093149be981f41b5518c1c *inst/extdata/MyRec.xml
92364a8366c20d4d56b56a4427e3a9b9 *inst/extdata/README.txt
c1e2d1c2e264c5dfe15d118b18fd1309 *inst/extdata/conifers
6c5856fe1b1fe56b6f6adce04e323da0 *inst/extdata/gymnosperms
5728de9a51e5bfec5a55d35cae53d869 *inst/extdata/input.trees
6f1346b951891943aea0b77b3c0159ab *inst/extdata/representatives
283cdb8320ed5cb6f3de910c3d3a602f *inst/extdata/selected
f0f5e745a9b66bbefb19d5e38e17333a *inst/python/ranger_to_recXML.py
bf1408ca96247b9d47db0303325b305a *man/A_selected.Rd
84bb8c0fda4c1b6f7bbf25b7c69c590b *man/AngGym.Rd
9b57639e4e22fef21e82117730401c77 *man/agf.Rd
a5169d05ee0424e6b45c16d8704062b1 *man/coltips.Rd
9571bd65ca254e6bb93c4f2467fdccb6 *man/gapless_msa.Rd
0931f3287c3c4d9451f61ddca09bac37 *man/getseqGS.Rd
3f66084bd347b987f7cfffcdd2edb0a1 *man/madRoot.Rd
46fcd39971acf2196d1fc1611922a96c *man/mapTrees.Rd
fae2d7f9974db62b199bc10599dec25e *man/mltree.Rd
2bc0b112faee47bd919bd430fb8f84e3 *man/msa.Rd
3efa1f5c2b995a00c793b5ffa6196fb0 *man/orthG.Rd
c906466f21b2e6a25403b480606f9ad8 *man/orthP.Rd
77fc740a3a965a4ec4c89b29a110a838 *man/orthology.Rd
3266418f8af0e0b3dc3423a6bc8a03c9 *man/sdf.Rd
e3856c1f82124f69049fe9610562aaa4 *man/selected_tr.Rd
72e7027df6690182d526853607a6ce16 *man/speciesGS.Rd
b9f3add81f04a8cc8e51a1056705df09 *man/subsetGS.Rd
9376bff63fe8b6f30afd559f63f70772 *tests/testthat.R
26e955bd4e6426842273710912ff2904 *tests/testthat/Rplots.pdf
db64604cbcfbc8673121f68d958f4842 *tests/testthat/data_t/rbl.txt
6f1346b951891943aea0b77b3c0159ab *tests/testthat/data_t/representatives1
0cb206644d5ece62fe8d75c201409ef5 *tests/testthat/test_ancillary.R
683ec3a1505407507a57a82ef05406ce *tests/testthat/test_orth.R
58d7b3c43a2439808f0221231c81e91b *tests/testthat/test_parseRec.R
dd43bacc98f9f73b133a808cf0250890 *vignettes/Figures/GS1a_conif.png
8c5a3d1b7f89fb05a5752aa1e36a53f0 *vignettes/Figures/GS1a_network.png
4fc14dae12ff6c46dea3d578877fe089 *vignettes/Figures/GS1a_pinales.png
e423ab04f77bfe77ca5c983b4a2e1ba7 *vignettes/Figures/RecPinales.png
d93074d3fd1033218e58f331b16a1438 *vignettes/Figures/SD.png
fa898b9693a91710f2aa382b493364eb *vignettes/Figures/ZmAth.png
e27874dcf8ea7e76f57972b0ee9d4dbe *vignettes/Figures/ZmAthG.png
2dc65edb516f18b709b1be5729ce4402 *vignettes/Figures/ZmAthOsaG.png
d944f5a641cdad31b3fda7eb58a42200 *vignettes/Figures/conif_ptr.png
3f8d05627998c05b227f3c006a583db5 *vignettes/Figures/conif_str.png
532215678797cc0246b2c9432328ed20 *vignettes/Figures/maize_ara.png
f573e0c12097dda73d44098c343f70f3 *vignettes/Figures/orthNW.png
bb10c0fb9d056b921ef9ac9ff76b65fb *vignettes/Figures/orthTree.png
2589723afc7a80397ecbaa82b019ecff *vignettes/Figures/orth_vs_par.png
2fd2efbdac45ee469702bc0f27b2a48c *vignettes/Figures/outparalogs.png
25ebb9adcbf708289ecbae512f3b8c05 *vignettes/Figures/toyEx.png
51b646d53a834475e116934095b46752 *vignettes/Orthology-Beyond-GS.Rmd
347f644393d6e9fdc920847cb8ea6345 *vignettes/Performing-Sequence-Alignment-in-R.Rmd
f24bded542de704c47c72f9f0e0df3b9 *vignettes/Searching-for-Orthologous.Rmd
e0c97d3c2298592a2ed68cb7b9b73503 *vignettes/Unraveling-the-Hiden-Paralogs.Rmd
