15db9d4e8016051869fa63ac2f2e4440 *DESCRIPTION
3b5a0b504ddf4449b60da9f20df5ccf4 *NAMESPACE
417261c4ea2c2689db0eb7d6a5d99039 *R/AAfragSettings.R
0ab8dd0d5601e7a03b00ef8f8cfe949b *R/addMassModif.R
cd3109d88c7cce38523e75e5e263304a *R/checkModTy.R
09a80213ab6d87bcb300707933a566b7 *R/combinatIntTable.R
996b3699118124298eb13be6704d4639 *R/combinateAllAndSum.R
ea71aafd0b1b035857b60d1c3f518576 *R/corMutShift.R
86c8d46dce8a9b045c82fca463e6d8e7 *R/countChildrenParent.R
0fa5baf1330e64da829ae4615de9d6d0 *R/countPotModifAAs.R
69d39dfca6d4cceba09567e75462ad7b *R/evalIsoFragm.R
b52a776d45d461955d804f26e584cb7f *R/fragmentSeq.R
92474886c71b197fcfe4feb11df64f1e *R/identifFixedModif.R
971d7ea007afc9806cd8e3a5c8447923 *R/identifVarModif.R
4bc92bf7144250a98646fe32f1307b6a *R/identifyPepFragments.R
02083b80fd79aeb074838ce40bb4f0fe *R/makeFragments.R
02eaa8358d9dd8e2bf239dea212a4f21 *R/modifFragmTabOutput.R
623fa4cdda9e3b98b485e4ac3c613d2f *R/plotFragmLoc.R
76efb4f5b6a68b157d73025a129df20b *R/plotMgfLike.R
f5bac04e78501f8f1d949b57ab703f59 *R/plotNTheor.R
f641a83cbf4b9a290b599fb06cd5d6e8 *R/plotPrefFragPat.R
783840c85152f2d3704d6391d6cb5c99 *R/randMassByMut.R
a9701d82eec0bc5dcf791aa86cb3f80b *R/randMassByStochastic.R
5da6d92cbbb4e754b6e761f2cb3e4e55 *R/scoreChargeCatch.R
ae6d6d95f0ccca3ee2f16a3903882f2a *R/scoreFragments.R
7fc950e3010513de11b24561e398901c *R/scorePrefFrag.R
6532da489b4d9a1e032e49e2639cc1ef *R/scoreProteinFragments.R
14991761815c06a08faee4e18887a03a *build/vignette.rds
18e205765802cf2651c9fc19f731c88e *inst/doc/wrTopDownFragVignette1.R
11186740db824bfe22750f3ea8a52e91 *inst/doc/wrTopDownFragVignette1.Rmd
235e79f3e3b63e8414db5d4ede1f0aeb *inst/doc/wrTopDownFragVignette1.html
f746490a52279f0a7a82061ab55ab272 *inst/extdata/corInDelShift.RData
562228754cf1648c6c62c929d5307987 *inst/extdata/corMutShift.RData
fc413ee05a086ffdc5af7965ca1072b6 *man/AAfragSettings.Rd
49ffbde1b0f74ff0bce758f131bc62ed *man/addMassModif.Rd
e5c277c798282aeb7e18b3007a2704da *man/checkModTy.Rd
91223358bcf04dad1bd7bee93047ada6 *man/combinatIntTable.Rd
ff97d731d4a5c982601db1c832eb5c7d *man/combinateAllAndSum.Rd
f54b56a20853877b0cf642ebe08be623 *man/corInDelShift.Rd
335bd45b8f24c2d83ce0ad443dd43155 *man/corMutShift.Rd
f630fad5422d160000ce5fb51fd0b37a *man/countChildrenParent.Rd
447b5044e0c97c7b05656f15f3c4731f *man/countPotModifAAs.Rd
85e397cce67cc215cac59e69b795e2e8 *man/dot-CtermPepCut.Rd
4e1038ec0f13ae335b6ff130dd59e78e *man/dot-NtermPepCut.Rd
94104245c674bae376c8a567a9439e37 *man/dot-chColNa.Rd
9ad7298c81ae450fd03c204c6c8dfcb4 *man/dot-chargeCatchingAA.Rd
8dcafa27b6c86a3784db6bb3ca034e37 *man/dot-checkModTy.Rd
654a2a692f81662ca508e678eee9b6e4 *man/dot-countLET.Rd
843e2cac5dec9eac9b334b5c54df2bac *man/dot-countModif.Rd
8078f5a790c611d0a1fabe5abb42b943 *man/dot-evalIsoFra.Rd
0cd45218bf0868bb5023a634babf0f69 *man/dot-exNamesTyDeList.Rd
115f92dfe6b7a569096179adb629dd45 *man/dot-multMatByColNa.Rd
c6fe243fdc4fe259a579d8ccb7978e1f *man/dot-parCombinateAllAndSum.Rd
36cf2b54ac1a406c30bafd4f5c395deb *man/dot-prefFragPattern.Rd
38178cf77fd75f6f09f83cb3d406e230 *man/dot-singleSpecModif.Rd
9651e2a5cfec9c1275d21eeda539f0e5 *man/dot-termPepCut.Rd
6fda8b07453b3b3343e9e40588f02ecf *man/evalIsoFragm.Rd
725e7e711e44f97ce696e7581adec52a *man/fragmentSeq.Rd
e03c970d422341e9fec3db7aaced81e8 *man/identifFixedModif.Rd
b70d267ae29b7ce3871c87b5afd01567 *man/identifVarModif.Rd
409d44f334c0cba871336a3887bb1f50 *man/identifyPepFragments.Rd
09293ddcbc8043bd93d5a72ed284b15f *man/makeFragments.Rd
dfa931ccb0404945a511136b14b7c5ea *man/modifFragmTabOutput.Rd
cb49acf5ecbb3e8c0dcdafc74cdb7d09 *man/plotFragmLoc.Rd
240e8a0bdeb30ce3e926cccf85382cce *man/plotMgfLike.Rd
29a440fec47bebb13ec8dbc6db4f1f40 *man/plotNTheor.Rd
0a801124bdaa3d6d759b7f5663442b03 *man/plotPrefFragPat.Rd
9b226afe0b0756ff9b66ba2c35b89869 *man/randMassByMut.Rd
54e7eceb89f3f56e7b7995ffa4e3042f *man/randMassByStochastic.Rd
105134a1485a649923f2d81cb1b4cb27 *man/scoreChargeCatch.Rd
defc5e245c3add89043b78089c6b7d45 *man/scoreFragments.Rd
9e519958d355748bd9309172adee35e6 *man/scorePrefFrag.Rd
cdea01759f386baff5472f5ea77e88bf *man/scoreProteinFragments.Rd
11186740db824bfe22750f3ea8a52e91 *vignettes/wrTopDownFragVignette1.Rmd
