45f958808070565e9fc8053bc624f9a3 *DESCRIPTION
15d87f8d4ecfd954c8dd3fc2b69a0cbb *LICENSE
735ef8ee7ca4457e8fee2a3b80e69640 *NAMESPACE
c7afa7b2137d57e730ac7c1a4e666c82 *NEWS
ead4930d8cbcf63ee9532da23eaff85b *R/add_basic_meta.R
b1acd21560ce746b3fa1e33346c1d4d9 *R/add_characters.R
8a3742fe5e603f306cef2a96ae1e9b8e *R/add_meta.R
5cd943276adbf9f17f5230085652e9e9 *R/add_namespaces.R
a42db5ed7e78b983aa7d4cae3927f87b *R/add_trees.R
f4b327981b2104ea7f458bf521e74176 *R/character_classes.R
e8df9aff327031794c0c468cbb305d90 *R/classes.R
eeb4a688d49a71b887d4720a1730174d *R/concatenate_nexml.R
274e5b1d797295c940c51dae5cefab3f *R/get_basic_metadata.R
18681c21bded1e01e13f8f0b9175c9e3 *R/get_characters.R
003fb16feefaf0fd999ec9a1224a0602 *R/get_metadata.R
fe892d1d2be5fff56f37b24e89515f87 *R/get_namespaces.R
8d5fa1848b3d2af7a3961f355b11eaaf *R/get_rdf.R
7a33762833a0441de7b1ac1d99504023 *R/get_taxa.R
3a890d1b39f18a08b0f4c7d94fe0d57b *R/get_taxa_meta.R
323a810bfdadcb830fd013011d4c40d4 *R/get_trees.R
f8c0a9c2cec4bcbde80170ee767eba13 *R/internal_get_node_maps.R
2c2f1c91251d019f03d99e61c62c42cd *R/internal_isEmpty.R
3372a2273979f5336464963d70fb710c *R/internal_name_by_id.R
9b3a7e3552acf23cf0193363a7644397 *R/internal_nexml_id.R
71a4b1b132719c58e5c5d7b4d8bc919e *R/meta.R
a0eb07febda79bb9019c22cc1de272bf *R/nexmlTree.R
8e1b70f3620578164ee69c83abaae05d *R/nexml_add.R
eaf388a4f6baa30b25470711aae80073 *R/nexml_get.R
8c9aa039421b472839a151b9c95ea5c5 *R/nexml_methods.R
62a1ad43be0fe7bacc51e3dbe927aa2b *R/nexml_publish.R
63e9cc50076b19cc883d4d3ebae0fa48 *R/nexml_read.R
f36974335b9cf2b7cf60cfc99eced908 *R/nexml_validate.R
3065770b1040bc175c9b11de5662baac *R/nexml_write.R
691f6b77eebe2825451557bd60df28e5 *R/simmap.R
7b7d400236ab6cfa6fe179224f9fa20c *R/taxize_nexml.R
db8e54fd0673bae7f809ede0afd2fedb *README.md
9425ef6a18084599e7e8e11fb5c8d45e *build/vignette.rds
3a5cfbbc09833527ce902eb774db5a80 *data/simmap_ex.rda
b2e0de0418b8c0fa9efed1fa5475a534 *demo/00Index
5bb8b588882878ecd86680b26e79a5e9 *demo/sparql.R
c9c4d4ca56051090a0302be6ec36db3b *inst/doc/tutorial.R
cab84d12f27122d3d91d98ee987fff6a *inst/doc/tutorial.Rmd
c4ca78cfdd63eb601dcecde438093de1 *inst/doc/tutorial.html
2de44d2898c22479b8a449767f1ab627 *inst/examples/RDFa2RDFXML.xsl
64a60bc7b825e88ba931e1da5fd08e28 *inst/examples/biophylo.xml
41cf6116441773694f8f32b88900d346 *inst/examples/characters.xml
7cfba1e69724dd93fe4a07525e419ed4 *inst/examples/comp_analysis.xml
835c4ec3a29a2a08be861f44d445fab5 *inst/examples/gardiner_1984.xml
d3a3d2519dcc6fe7b5399061db69f1d9 *inst/examples/geospiza.xml
84cf7d2d949b6a36df18bec31d4c8917 *inst/examples/mbank_X962_11-22-2013_1534.nex
727f60b2ff7bdae76ffc09452937107f *inst/examples/meta_example.xml
34b804a9a1187689fe223be6498dcd26 *inst/examples/missing_some_branchlengths.xml
2fc3d9aca072a9964a95de8a8d7e6d53 *inst/examples/multitrees.xml
e34f32b1c48ae0acd8bfab2f09971945 *inst/examples/ncbii.xml
200927eaf3dc24fd97bd607277693992 *inst/examples/phenoscape.xml
cb142aadc75b48b696ccf6d42637ff72 *inst/examples/primates.xml
1f52dfb1306c9ed696d14f805e95a498 *inst/examples/primates_from_R.xml
065eae0c3189850bcff9d838b5041f90 *inst/examples/primates_meta.xml
a64c177eae6be033dd8712e6d693b2ea *inst/examples/primates_meta_xslt.xml
8a8e3e961583a94cec32852e9b4d36e8 *inst/examples/simmap.nex
327200ae849ba639f267e42d04932aa0 *inst/examples/simmap.xml
d1740a7345534477c40477f0fc776ad7 *inst/examples/some_missing_branchlengths.xml
e49283485e7dec7c98f77c54cf6406bd *inst/examples/sparql.newick
74361320b5d4bc935ea9d09a35463708 *inst/examples/trees.xml
e13e266bacbb7285ed5893df2d5c7e12 *inst/simmap.md
3cd270ff1d5bc47708451f8937e5ea81 *man/add_basic_meta.Rd
ef185fed6bee253a235d0e5f51eadb74 *man/add_characters.Rd
c1cbe2829fb5e5bf65d889edee555f14 *man/add_meta.Rd
093ffcd308764dd6b975549712c50ddb *man/add_namespaces.Rd
c05e10db835ff63c9764bd2ff4683074 *man/add_trees.Rd
3b891ffa9c0fea23a7cfab9de1f93f8d *man/c-ListOfmeta-method.Rd
e9379971707c5a0b510e07f283ba4dfd *man/c-meta-method.Rd
bf4851d3b523433e822d2801bfc0d1ef *man/c-nexml-method.Rd
585e7b8598920dd7dae138f54861ba93 *man/flatten_multiphylo.Rd
221c6489a288c40b0deda71691089e6f *man/get_characters.Rd
3891f73007fb5e75dbe9506e951d9572 *man/get_characters_list.Rd
fb2effd3d16eb5def38cbdf19e163231 *man/get_citation.Rd
b0252de6a60e564d9425898fea10a0f8 *man/get_flat_trees.Rd
b9c17b802d2138aa51097def1a7ac445 *man/get_license.Rd
f32d20a482cb1780f38ec446ea5cf14f *man/get_metadata.Rd
52f3565340a3d3283262b0f6cf2203bd *man/get_namespaces.Rd
40b46bc22642e8b88b54cd98f1c59c56 *man/get_rdf.Rd
5541e094f2c5a7eccf208f60cbd0473b *man/get_taxa.Rd
ea27ff8910c1108a4a1ee41b1a5ff165 *man/get_taxa_list.Rd
56afc4c33320f6cc5a07045ea2c415ae *man/get_taxa_meta.Rd
5e6c4be5184b9e7d322b54f3013bc97a *man/get_taxa_meta_list.Rd
dba311deffb5e062cffaf9c87bdb314e *man/get_trees.Rd
07362a35c808f50baeabc38ccf793c14 *man/get_trees_list.Rd
6b7a44f710e02f0674e0f1a7d7a94f32 *man/meta.Rd
d6dd7955ef8b438a7b6a2deff90bd2fe *man/nexml_add.Rd
35a99fbe4fb9ed14d5e49ce1ad0cfd10 *man/nexml_figshare.Rd
e01d9a40a73e0319cf4393f199f0efd8 *man/nexml_get.Rd
64f0a23cba40956ad7400dbfb9727af0 *man/nexml_publish.Rd
0d78d35ec342f600d2953078f22d9c91 *man/nexml_read.Rd
99383d818cf4f2d94ba5ef91d3d01c0f *man/nexml_to_simmap.Rd
b4106bd3e9da9f1d696d2729f4c677fb *man/nexml_validate.Rd
188c43d3ce89e240b53503d6c9fb69a1 *man/nexml_write.Rd
ab06eea995b78453403aebaacd104e1d *man/reset_id_counter.Rd
4dc300bd234457929309b6645f4d8214 *man/simmap_ex.Rd
6f8e143d76fc52d8d2d3a4614a8784b1 *man/simmap_to_nexml.Rd
8531ff6b3cb133947a8742d99525f3b7 *man/taxize_nexml.Rd
d67bda4cb42476215dc3dd9921ccd985 *man/toPhylo.Rd
eccf0854fd8f84076b8520c9dcc88963 *tests/test-all.R
d669197af0a711820322c0416a0b2717 *tests/testthat/conversions.R
f1b67a782ec477837e9705a3332ba809 *tests/testthat/geiger_test.R
232821401dcf38f522128f9d439b4755 *tests/testthat/test_ape.R
ebd7918ff14f8addfcda68b0a959c93e *tests/testthat/test_characters.R
1aaa53dc9b10ef412ef3f37e6965e04a *tests/testthat/test_comp_analysis.R
4f339642ea822f53472b7f1388a74ef6 *tests/testthat/test_concatenate.R
3c4a917e4e2dd0d3414ea67269d6cbbf *tests/testthat/test_get_characters.R
84b7067fbe52a42ea40cfd500990d22e *tests/testthat/test_global_ids.R
0d0e9289ad11f3cd8db3f9ba96c6ccbb *tests/testthat/test_inheritance.R
5a238bcdeba9041fb06e4cc2e2959912 *tests/testthat/test_meta.R
ab4965318e5a77be2984d72b1845e4d5 *tests/testthat/test_meta_extract.R
a46c56db5408e475a5f7072b6aa69811 *tests/testthat/test_parsing.R
5091f801f732ca932e6114a703f492a5 *tests/testthat/test_publish.R
de8c8e9f3d60a41e861a1ab091d72023 *tests/testthat/test_rdf.R
9f3ef8f7edbefb2075f1ec3a15c8be75 *tests/testthat/test_serializing.R
30288b0ce184e754f6f68b91987e14f7 *tests/testthat/test_simmap.R
f589a334279fb435aac4aa5cb644c22e *tests/testthat/test_taxonomy.R
ad229870e39d42a0f700562f88e12c1f *tests/testthat/test_toplevel_api.R
3cc1850e245667fc65090ed69c8fcc11 *tests/testthat/test_validate.R
3c00fa8a1d9507f11afb0cf8b3295bc4 *tests/testthat/treebase_test.R
6b83d44e77f1f00b630e756572ba0a7d *vignettes/Makefile
39e93959870e05a889efc54e41755d4a *vignettes/figure/tutorial-unnamed-chunk-4-1.png
39e93959870e05a889efc54e41755d4a *vignettes/figure/tutorial-unnamed-chunk-4.png
cab84d12f27122d3d91d98ee987fff6a *vignettes/tutorial.Rmd
db8e54fd0673bae7f809ede0afd2fedb *vignettes/tutorial.md
