87703e16452541fa533b506159540e11 *DESCRIPTION
67557c16d886b4d6219671c6d22d6e80 *NAMESPACE
29318baf6bad051b73a009235d1ced06 *NEWS.md
2079801a49557f659f54ebf2dd36b528 *R/CharPart.R
b6481fcbd02a956dea972623005d4fa6 *R/ST&P_FBD.R
0bb7b1e6fa21d8b81cb93e3c9a3aa6eb *R/ST&P_Rates.R
57498df48676bd998ee6e9277d13334f *R/SelectionStrength.R
1de45529f2f672f51dc1a90fb5551882 *R/burntrees.R
d95780c6ddaf9ef7b4132417f0a26c94 *R/helpers.R
4a55c898b5cda22277ccc3aa4fc9ee25 *R/helpers_beast2.R
c47d0a7e5890e74d2baf666fa3efffd8 *R/treesWoffset.R
8807f4a78907302b8863d93bfcf8fdea *build/vignette.rds
ee23cfc3a2c52c21777d93ee281b64f6 *data/RateTable_Means_1p_Clades.rda
45860a13533fb0348c39d7b54b6bc6e6 *data/RateTable_Means_3p_Clades.rda
d19bd6cd604b35f240c6385e8a0d61d8 *data/characters.rda
a7f685c4825eacdaba0a814e528ce673 *data/datalist
5665c027a34f25fb0e42a48f3509a368 *data/post_trees.rda
8b6a705fcb7b53826e6614d1bbef540b *data/posterior1p.rda
634fe79a5f7f518f497cf52c2a7b468f *data/posterior3p.rda
5ccf1c7c78b552f1cbd1c719b22270a8 *data/tree1p.rda
5609bd351412b4786a88e399e5f4e215 *data/tree3p.rda
3b4d4bf9d3ea64794eb7684d2d940dc6 *data/tree_clock1.rda
d7a381d6c61b5a69a2c9742e959d5c21 *data/tree_clock2.rda
b7031d52a2ae7dc51b01fc3fa6e686fc *inst/CITATION
5344dcdfe6ccee1ed2cda4051eefa6ca *inst/doc/char-part.R
2672f65752f5f353344f7b49e5d39663 *inst/doc/char-part.Rmd
99ab2b1316e3ebcdf9929d35b8a75a1a *inst/doc/char-part.html
9cf6967841277e58d22d9080c7096261 *inst/doc/data_treatment.R
d833d6bfff3ba7c9080cd9c94bba3b6e *inst/doc/data_treatment.Rmd
235314428920c487fc382851406571d8 *inst/doc/data_treatment.html
01ce615863a381cab28864ea90f303c2 *inst/doc/fbd-params.R
cd61fdd4fcd7c7056ed117dca533d02b *inst/doc/fbd-params.Rmd
9b4602ec9d0bbeae8ca02fc790c0a084 *inst/doc/fbd-params.html
b3000e6d4a3d8966fadbd8ab390147b3 *inst/doc/offset_handling.R
fa91201ca4df7e4346babff6aabe0385 *inst/doc/offset_handling.Rmd
d6de84cfa6f8d2971adc2099078acdda *inst/doc/offset_handling.html
92d72da9dc239a62a009bec57f65aa77 *inst/doc/rates-selection_BEAST2.R
e39ffc0ad810c42f6a83b741263b8a5a *inst/doc/rates-selection_BEAST2.Rmd
1ca8d51599e24f90a55373a80652417e *inst/doc/rates-selection_BEAST2.html
9b66731cf07d7c9dead6a6e250819dff *inst/doc/rates-selection_MrBayes.R
e89c92d691ee1ce25029dbd2480bee77 *inst/doc/rates-selection_MrBayes.Rmd
99f5c1bca40ca2b30d65e2038f704a5b *inst/doc/rates-selection_MrBayes.html
4206c5d7600051576184475030c98c42 *inst/extdata/DataMatrix.nex
8ef1c37632102d10b64bb87edd085178 *inst/extdata/Penguins_MCC_dna.t
385dd0e97b96a5ce6e24ca0e9f4b5d4c *inst/extdata/Penguins_MCC_morpho_part1.t
aa4435268473b6bf4c02024332153143 *inst/extdata/Penguins_MCC_morpho_part2.t
4c493f701ccb9a538c0aa4f000372753 *inst/extdata/Penguins_MCC_morpho_part3.t
96e9835423c7e0d54eb434ecad79c3bb *inst/extdata/Penguins_Mol.nex
c81d9e3db56291cc213349ce1c8cc2c3 *inst/extdata/Penguins_Morpho(VarCh)_Extant.nex
ec4cf274ca82395fb2543e726021fa8c *inst/extdata/Penguins_Morpho(VarCha).nex
1e4b13ca8c749045e91a96f736190fb2 *inst/extdata/Penguins_log.log
4139e11e2bc448013078119e4bc0abd2 *inst/extdata/RateTable_Means_Clades.csv
31b121f7914b9a2b927ac89d85771189 *inst/extdata/RateTable_Medians_Clades.csv
16c14239596af4feba320c3d74d5dd90 *inst/extdata/ex_FBD_BDSKY.log
4ee125a8b93d97a16407c73f343db290 *inst/extdata/ex_FBD_SA.log
7372434d3f3cfc4627f0a60f686aeefd *inst/extdata/ex_mb_clock.run1.t
9f57318909187011d7c0e03c49f626fa *inst/extdata/ex_mb_clock.run2.t
d887981451489f23b106cf7da0b3d90c *inst/extdata/ex_offset.MCC.tre
cfbd206f389deefba4d01cdd19d707a3 *inst/extdata/ex_offset.log
743be0d6115a619a463651c2dbfbf94d *inst/extdata/ex_offset.trees
19db334dc92a06538d1083d7c521e041 *inst/extdata/ex_pwt_rate_table.csv
396fcfc6f1c952c0c7b379062a3e231a *inst/extdata/iguania_50genes.phy
b9bb2d0c7bb457dee263b9cf95ee00c0 *inst/extdata/iguania_partitions.txt
592016298464084d7af99e520afbc04c *inst/extdata/tree_mb_dummy.tre
e5153775281ea873962136fc9d132598 *man/FBD_dens_plot.Rd
2eab710189180bb85b34b4bdfd1ae234 *man/FBD_normality_plot.Rd
1246270bca56ba15b9ead732eaa049c5 *man/FBD_reshape.Rd
2259e4c4e655946509b02e4f3d9d1889 *man/FBD_summary.Rd
1a52da813be024a19e131e5e26de7429 *man/FBD_tests1.Rd
85ae3ff15d7bb6b5d281e68a08a02473 *man/FBD_tests2.Rd
bca1ff6f0f8a94cc87c25f85ea686dc4 *man/RateTable_Means_1p_Clades.Rd
fe030b76fe1f3a4dc2fa346a48908497 *man/RateTable_Means_3p_Clades.Rd
c33d1c6c74fa1e5d03263d7f0459331e *man/burntrees.Rd
1efaf510c04f3c4bf4f65fdbd92e8e43 *man/characters.Rd
50410140de1ab8cf549ccfb4492da67d *man/clade_membership.Rd
602406e24a21c14e9564fb79094382e2 *man/clock_reshape.Rd
22b4ec36e4106b21492d7bed9ce925ba *man/clockrate_dens_plot.Rd
997d6e5cc81b34687be6d4d696fa75c0 *man/clockrate_reg_plot.Rd
0c32507f7ebc684293d1077fb204112d *man/clockrate_summary.Rd
df4954b7151c46a93c77bc8e8622770d *man/cluster_to_nexus.Rd
9eb3e492808e53b978bb0601b9c8bd79 *man/combine_log.Rd
bcd603140e7b99deac58f2f23879bfeb *man/drop.dummy.beast.Rd
74a824bdfc2efaebc46d9209a4ce30b6 *man/drop.dummy.mb.Rd
ca7eafbac5bb4c8d75fe8e7529db9efe *man/get_clockrate_table_BEAST2.Rd
41f95841e48c60168c90175a0f38b809 *man/get_clockrate_table_MrBayes.Rd
8f9ffdcaa967df537166fc7a1cd199c8 *man/get_gower_dist.Rd
f05c2e5189dfe8e7a610988cc765db5a *man/get_pwt_rates_BEAST2.Rd
b3f7e8b91b4093d3abb559d44024d63e *man/get_pwt_rates_MrBayes.Rd
bf87cf8d38a36f69291b8d600094d642 *man/get_sil_widths.Rd
417080159cd08631661e1bc8d751544c *man/make_clusters.Rd
c8149e4af2b7bf7d6d167f3ac018f021 *man/offset.to.dummy.Rd
a614617520e50ea060cef42605f1dc26 *man/offset.to.dummy.metadata.Rd
f46be60885831c63aa2b80fba573f680 *man/plot_back_rates.Rd
00228fd239b9f54de93c0ab636c74612 *man/plot_treerates_sgn.Rd
563e429f9f14960db7888380174a8d84 *man/post_trees.Rd
a0fbb4f2220ca4496392cf158383bfe6 *man/posterior1p.Rd
047f0f8736db2724c27df89904912f0c *man/posterior3p.Rd
7f133ef6a4703c0a8e733439979130b6 *man/tree1p.Rd
84e973baee204cd969452d7fb5d37ac1 *man/tree3p.Rd
68c6c1fd9fecac42faa93341398bec8a *man/tree_clock1.Rd
f93f8b6c0702a5a599c1f4533288bfde *man/tree_clock2.Rd
8083d81b42d45cd7a2a3eef39a9b08ac *man/write.beast.treedata.Rd
a2af8b194374de595e019e720ec8157a *man/write_partitioned_alignments.Rd
26d157ed12da7108db37ca9e80099dc2 *man/write_partitioned_alignments2.Rd
2672f65752f5f353344f7b49e5d39663 *vignettes/char-part.Rmd
d833d6bfff3ba7c9080cd9c94bba3b6e *vignettes/data_treatment.Rmd
cd61fdd4fcd7c7056ed117dca533d02b *vignettes/fbd-params.Rmd
fa91201ca4df7e4346babff6aabe0385 *vignettes/offset_handling.Rmd
e39ffc0ad810c42f6a83b741263b8a5a *vignettes/rates-selection_BEAST2.Rmd
e89c92d691ee1ce25029dbd2480bee77 *vignettes/rates-selection_MrBayes.Rmd
0bc65d164e0852846a22b5459c10c835 *vignettes/references.bib
