bbbba25cc8a4cb77c3186a3957598fa9 *DESCRIPTION
ef8ad89a93faa27f0b9deb5feaeff525 *NAMESPACE
6decba8333b3683f1c710ae85c6a83cb *NEWS.md
87ea152f070e45df119c0cdcd145eb0f *R/CIF1.CR.R
ee90daf33faefb0e6df592fa3b864610 *R/CIF1mv.CR.R
88cf3abed9a2c0f207bae3c5373b8638 *R/CIF1mv.SF.R
70aa46d82a389dabbe2c0d2769614dfb *R/CIF2.CR.R
6419714529283591ee2cd1682e9f5202 *R/CIF2mv.CR.R
17aefe56b73a7244845f3373bd897d9b *R/CindexCR.R
7aed8c5b0e2002017507b51afa56f697 *R/Concordance.JMMLSM.R
e77225106a4b800f3e2731b8833c0a50 *R/Concordance.R
d5e1d6b67cdaea8d90d70f87c0f55f04 *R/Concordance.jmcs.R
11a88c218d7b2a7198d5c4f8a0eaf1ad *R/Concordance.mvjmcs.R
29d500d682c4f23a8a8bd57c05930b87 *R/Diff.R
7deadfe332e88d13eb4b3f2156f176d2 *R/DiffSF.R
3ab5ae744a4cbf05e88dd529e94a893e *R/DynPredAcc.JMMLSM.R
120f66763fe49e3c5c50d233bf50cdfd *R/DynPredAcc.R
e5259db7f755fa59eca0bfb53226ea16 *R/DynPredAcc.jmcs.R
1b2a55f5baa30c3584ec2ef220d9b991 *R/DynPredAcc.mvjmcs.R
21c37e7cf059b0833e45fdcfc5d5bee9 *R/FastJM.R
6cba94da7764aa5e4d77b9e477241dbf *R/GetBayes.R
13399bd92f32b620dc3f1f89979cb445 *R/GetE.R
ba16248886c7d7368a88da8d9f6432d6 *R/GetESF.R
01272b3074291e89d88a1abd0549bc26 *R/GetEmpiricalCIF.R
ad21fd0c463bfe6f6be26bde8dad5953 *R/GetGHmatrix.R
2ad340fb4698583508873040b8f9290c *R/GetVarSurvfit.R
9c1923f34ca5330efc52ef53261bf5ab *R/Getinit.R
74f8e18a3830c9d49739081d24b5cd88 *R/Getmvinit.R
bb7f2b30528b320151fba43203311478 *R/Getriskset.R
c61bf9490e87dbb212357042c1561142 *R/JMMLSM.R
e4ae474ac9d7b549de6ddc37bf339833 *R/JMMLSM_control.R
f92f33151e86f1d9eb9fbaa363c898b2 *R/P.us.R
a34641b4167bbcd15067ab9ee8da1952 *R/Pk.us.R
58c2c967f09c0e5f01d6ca3c31a01dce *R/RcppExports.R
3f8740a2996e1a05657bd4d975d59784 *R/combine_biomarkers.R
d0c10d93bade2fe45453b73d55210116 *R/data.R
b58aa8529ac5698e6cc0686359d565f0 *R/estepMV_worker.R
58d7c874aa664c957c8dd0f59b7f92e5 *R/estepMV_workerSF.R
921f4031c16f164f086641184489e920 *R/fitted.jmcs.R
3ebc4341ad1770bfa450cae53417d947 *R/fixef.R
6b6a282b3796a4356e0161691b478fb1 *R/getLoglike.R
5a708a41c48438c1389915fd7ca3dd07 *R/getLoglikeSF.R
7e90e58b9503ee10f644fc8405cdf77c *R/getM.R
8f3c0d318493194e552dfc3c23ff6b75 *R/getMSF.R
f1705b33753570a515ddef9a9e61aa8f *R/getbSig.R
a193824f8a3efc4a541984a807603165 *R/getbSig_grad.R
d828023dabd15fbe67bf876df66f21ec *R/getbSig_gradSF.R
a862632078a737827147348e72901474 *R/getbsigSF.R
5790e04f93da63ba37a0c224aa697938 *R/getdummy.R
40733c41d437d734a809680ebdeb4661 *R/getmvdummy.R
0e3da6b056e41ede58f81901b5f320aa *R/jmcs.R
f61b69fa4abc97593a8db53af3f50412 *R/jmcs_control.R
0c9eb4fe541514002f44c89c1813b64c *R/logLik.R
af8b7ac32544d787732455376ff54885 *R/logLikCR.R
3c2f05a277bb5f7d80e9232855a72621 *R/logLikCRmv.R
48640db587a2a0aed0f2006a763272e4 *R/logLikSFmv.R
5622a54f650c0b439a9cefe5af6fd082 *R/mvdiff.R
dda3e41818a966251635954d19be72d7 *R/mvdiffSF.R
d13c85b9da8bf1a42ab7d8d7b8eacb67 *R/mvjmcs.R
a30e6f40c67b7093c3a383079007926b *R/mvjmcs_control.R
b388f1c9c08db31cf9ee2075587883da *R/plot.jmcs.R
134284df629af938199fda3ba1cc025a *R/plot.survfitJMMLSM.R
907379d019839110add92b8076e89077 *R/plot.survfitjmcs.R
942784e5e7acc97bb73de0738c793094 *R/plot.survfitmvjmcs.R
ba2d884ee08193b407bdfdb4416e2667 *R/print.JMMLSM.R
e569a15efa45e79862f89dd1bae36ae0 *R/print.jmcs.R
e9835b1f3c316f92670c1a268c7bdf40 *R/print.mvjmcs.R
8f7e7be40a10b23c11decd97cfb64e15 *R/print.survfitJMMLSM.R
4d59c29e523d79ea409d5417deeb2eb1 *R/print.survfitjmcs.R
756e7055df6b6ad37221c53f8039be5d *R/print.survfitmvjmcs.R
5212328f39949c1e7bc080bf82619ec2 *R/ranef.R
d37150f711be5348edc51c4e5ba98bed *R/residuals.jmcs.R
5b7908cd7c22feabdc317ddb268fb1cf *R/simJMWSVdata.R
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13dbe00288b337aeb007998a00b295ed *R/simmvJMdata.R
2f139e5b794b400eb34630b2b04db37f *R/simmvJMdatalm.R
9cd4ac49e0ef03f4bf85d668af551261 *R/sortdata.R
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e6220f4e006f589c94dceb1e0df15ee9 *R/summary.Concordance.R
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355bbe16772f2b4a6ee99b5d0ee71e69 *R/summary.JMMLSM.R
2fd30187d29a99de0db4a63fb0b828dc *R/summary.jmcs.R
ad7c4892243cd09095034f4aa08978e2 *R/summary.mvjmcs.R
3f9425219992247ec28e21b2a5115e53 *R/supporting_timeplot.R
7ba6371f13e96806a7eee1aff82a67cb *R/survfitJM.JMMLSM.R
904be10dac34f24ae94ed075dc1cbcad *R/survfitJM.R
4929843b9ad0c811d98a9d37a95c02e5 *R/survfitJM.jmcs.R
8b8ede75a4cbe5569f3f5f58e7e58d2c *R/survfitJM.mvjmcs.R
7d837046093396d7b92eddc6fc5c86b2 *R/survfitJMMLSM.R
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ee5424edfa00bd51cac2cb8a71f14c96 *R/survfitmvjmcs.R
9d1c02d4c58015b25090ed05c9a5aead *R/timeROC.R
71c0322186a2a960b5f59d773d69b29a *R/timeplot.R
bb5514b69f17336e3f02bce618a315d2 *R/vcov.JMMLSM.R
b06e8295c1c3cd7c42fcc7e79398f323 *R/vcov.jmcs.R
40ca75b216229774bf9352f22e24c4fe *R/vcov.mvjmcs.R
d627621037408b81cd99080d73c4b999 *README.md
7167f54122618adddbbdd960996024f1 *data/cdata.rda
706c7b03313f1b72f0002e8fb4d42ab8 *data/cdatah.rda
f61ba7b44e91ffc4932f3af82a8c4406 *data/mvcdata.rda
0e555988da464faea6510f7d4847df10 *data/mvydata.rda
e886f9d7bbc2bf137fca3b2892d06ac6 *data/ydata.rda
e63ab09ced7e244ccecd7d944c1dc27c *data/ydatah.rda
8638921a5a17a889f14ab140180c9ece *inst/WORDLIST
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eb84ee3dc77356c25a661cf814737f3b *man/jmcs.Rd
cd0fa684fa2584d7fa24469c060ea554 *man/jmcs_control.Rd
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050487f2ac1b0f36e4644c6876f14150 *man/mvjmcs.Rd
413432a876059a5f9a05da7c5fbc4187 *man/mvjmcs_control.Rd
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3beb376ea8bb0255f18cddcd4f907b10 *man/plot.Rd
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3b316398fc57dd7ca5185168c4750ef3 *man/print.JMMLSM.Rd
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0ea0263b68e47c247bb8a74ef33e4f03 *man/print.survfitjmcs.Rd
f0e6d31e689f40a80e85af6b57012779 *man/print.survfitmvjmcs.Rd
7753238aff3a633b3c668b1915cba51a *man/ranef.Rd
a8d40996cad3690272b453d4b2b1ff6a *man/residuals.jmcs.Rd
5b9b4367aceb67950ece51145e1c3742 *man/simJMWSVdata.Rd
49895ea875c46bb72e6ffdd024db13d0 *man/simJMdata.Rd
ab0663e0fb3dd16c0908e3c23bb3cbf7 *man/simmvJMdata.Rd
77e65a10a8a3d66121a89acf9892f1d8 *man/simmvJMdatalm.Rd
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21d96746f6226fccd3d7a4fb5f7872cb *man/summary.Rd
74302d0c03e7e9adc58ebbf082907458 *man/survfitJM.Rd
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e53d783993eb1d8362b39c567a6c396f *man/ydata.Rd
2542d36c95b1a1f03bcd76c2b557b22f *man/ydatah.Rd
a6da1b701c1f8fc1eeb5e78ba999e166 *src/GetrisksetC.cpp
2b4e4a822a538190e512ff75113a0f90 *src/GetrisksetCSF.cpp
44c54138eecdc43e8d936812de8e6617 *src/Makevars
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45748e2bd652d11aaf888962d138457a *src/OLS.cpp
593f01ac269dc6653199b80142548ceb *src/RcppExports.cpp
7c5f9e4f4c00257a766154c60b3b18c9 *src/basics.cpp
53863a3ccfc8f601577760f1de9b066e *src/basics.h
34cab3c45ef5bf7943684bf228234a41 *src/getBayes.cpp
0e86f615f3d32d6f05d6cdb944c3a73c *src/getCov.cpp
1d851f5a5f332ce07cf3771fecbf984b *src/getCovSF.cpp
5388ce0195dee54b137217796fc486c0 *src/getCovSF_JMH.cpp
26a35abec6da3471c18ebd87557553b7 *src/getCov_JMH.cpp
9e741e84ad57b6b7e4bce86d2f71636d *src/getEC.cpp
20127b51c0294960e51ff67fd4220b44 *src/getECIF.cpp
7d256127e43c12a385d999dd71b15894 *src/getECIFall.cpp
f0760769ee3d890f16dee6eb95736b40 *src/getECSF.cpp
3f75484cb2150ec922eceffb81ccf43f *src/getECSFad.cpp
d9b830d4a34c00dbb3b13e63c36c81f7 *src/getECad.cpp
ddabcdd8dd55ab8d2d3a0e9452d2c901 *src/getECpseudo.cpp
253dcf2a53c23f1ec710f77ecd0a8942 *src/getECpseudoSF.cpp
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53aefd39f99ab3acfc82ecbd0c28d62e *src/getES.cpp
0efc21407b04ba0c87b628a55b32b498 *src/getHazard.cpp
78abaa308e6a476c792792a4ca3d88b4 *src/getHazardSF.cpp
f50ce4fbd8b6e6cbb77c5c21cd7690c8 *src/getMC.cpp
70434b6374b02083f80f82de3d6c99e6 *src/getMCSF.cpp
563cf6c84a02e976ccb645691e8143ab *src/getMCSF_JMH.cpp
5602721a61da7c2159a8ca828b7393d1 *src/getMC_JMH.cpp
2340372ec55905b6a222b60cb6c2c318 *src/getMNA.cpp
3f0c72a1e0846d7e8f020bda7fcfc538 *src/getMaGH.cpp
2fba13d484bc8682c4978a0e5e465559 *src/getPus.cpp
0f8e4f4a3d34fbc5be2c2a8110f3a0e9 *src/getPusCR.cpp
38d2e6eabd31103a35fe8061e4107262 *src/getfitted.cpp
8babb406f8652a9bcf37f637832f08d9 *src/getfittedSurv.cpp
6fe4819b3c8a904ae5fa4ab932da953e *src/getfittedSurvSF.cpp
c279dc9be89bac60d02baff49b778d87 *src/getloglikeC.cpp
9151741ff6707bc6763c565dec3baa85 *src/getloglikeCSF.cpp
58163ce41ab4216230b3cf038854a4d3 *src/getloglikeCSFad.cpp
066c5e36863561d4a0bf6bce647ba118 *src/getloglikeCad.cpp
f0c56a4de814d8f3505531a263736d8e *src/getloglikeCpseudo.cpp
33e453b32b570230248f719d288f8d15 *src/getloglikeCpseudoSF.cpp
cb4476703692a06ac40dc26c768e01b0 *src/getloglikeCstandard.cpp
d9e667eb357bbdbc41aead5143051d72 *src/getloglikeCstandardSF.cpp
a6b69f084d1c1d243cff2657328febbc *src/getmvCov.cpp
17755aa4ad056d865c2800ed299921ce *src/getmvCovSF.cpp
36c1c79175461205d3a2e7499bad236c *src/getmvCov_lm.cpp
1dc8a765a613c5fb38d68be9bdea0293 *src/getmvCov_lmSF.cpp
e0a52e51c997985b55683742a2593fa6 *src/mixedmethod.cpp
39ca192572935de8859cad786524ed14 *src/nonmix.cpp
b5782bc02abd06a4d218e6fef0db12f2 *src/normalApproxSF.cpp
ea97cc01fea86686d9cf1fa60af65ed9 *src/normalapprox_lm.cpp
533dec411089fd602db59f826aae1a0f *src/normalapprox_lmSF.cpp
0622a97a2aaa3c342f09636052c2d7f5 *tests/spelling.R
46650f74197e84205e72819ae9c14663 *tests/testthat.R
4d6f03d6aaa13f79175b5ee7a5987ccb *tests/testthat/test_jmcs.R
