7c0ac0159b6868e3798e6875cdf6cdeb *DESCRIPTION
75f5d319ccf6f5f163f5fa62eb982040 *NAMESPACE
1c648c45c4b5ae8361465d6adb0c17c1 *NEWS.md
ffec4fbf38116852e068b0157a7938fb *R/abc_model.R
36621004839fb56afd62f1717a7760a1 *R/alternative_models.R
734905a23e17e5cc29c23e752e31fdc1 *R/clustering_similarity.R
963b38dab746bfad383a1821f3adee36 *R/comprehensive_summary.R
a9eeb87699788064f8cba31ff74309c5 *R/globals.R
1ccc5fb12b37380c78c6d7feed9b133b *R/heatmap_visualization.R
8d4d4512ccb7ac2e1691a8db99cbbbd9 *R/performance_optimalization.R
85064918687e7b0a3866c3eeccc22737 *R/pubmed_search.R
a2c4ae4969c9ee4cb654229758ac4c81 *R/queries.R
7d058f476c0fe1ad19f75b82701bb6ff *R/text_preprocessing.R
80b171d7585b00061a67d502c4bb94d6 *R/utils.R
f99a41bbbe537af5ff3744e2c3fb6d7e *R/visualization.R
02111b611d7731f117ebbab31810abaa *R/zzz.R
dffbb0294868251c992c97b6dcd5cebe *README.md
810733c60ffbcbd0661deb192f094ed5 *inst/examples/alternative_models_example.R
268ded7815825952e5f056e9069e9dc0 *inst/examples/document_similarity_example.R
27f2d92d051d821e3e557d52765572fe *inst/examples/large_data_example.R
14d77073c1976ac9e3bc1418997ef277 *inst/examples/migraine_example.R
7a35bf40ceac9789f9acc3cdb0ad50ed *man/abc_model.Rd
a6e8f67f738864fa18c70362b293f351 *man/abc_model_opt.Rd
ede2c0577d8b9371af6681cc00ff567e *man/abc_model_sig.Rd
3d884340699d141b593fe9adf8b10b24 *man/abc_timeslice.Rd
9818f81af4e9563fd8c6ea70fb9627e7 *man/add_statistical_significance.Rd
05b0f8980bb2d6aeb1064fe08287b99c *man/alternative_validation.Rd
124ecba73bda0c0a0d2ea7ce00b37e53 *man/anc_model.Rd
7b6bb533d88e51eb55970f14deca4ef4 *man/apply_bitola_flexible.Rd
b8645e3facaa3e7cf2925c2e95a2a0cb *man/apply_correction.Rd
3ffe61a6f0e9e5ea66521c5b6ada6769 *man/authenticate_umls.Rd
811d928ddefdc241c6ef5c48365d84d7 *man/bitola_model.Rd
654c32841ecf001f6381bc5b965a3814 *man/calc_bibliometrics.Rd
f7b47719e5482202887753e5e2dffa7b *man/calc_doc_sim.Rd
ef6455f8dc8b91c75db009f36e35d0f8 *man/calculate_score.Rd
b7cbd0eb4015cd9ac705656fc107883f *man/clear_pubmed_cache.Rd
da28d3d80b637ccf81d6952aae567551 *man/cluster_docs.Rd
e472e790829de29dbf5527ceb9e7fed1 *man/compare_terms.Rd
bacfb02cc5ff94227d92e1cb70862af2 *man/create_citation_net.Rd
834501aa051c053ffb52784ca65db5c8 *man/create_comat.Rd
3f427fb53a705060cd8d6a4833ff2546 *man/create_dummy_dictionary.Rd
b27971c721ba87c1f7c71ac459029d1f *man/create_report.Rd
7bd3e7f65d2e5e9345b2e249c79f5e3e *man/create_sparse_comat.Rd
771a8fe3cdbbb225ba2877e2bd191a01 *man/create_tdm.Rd
78b0bd8717cd59941a22e97e86d02417 *man/create_term_document_matrix.Rd
9f4fdf265e4e0bc1f62f581ab1df23c8 *man/detect_lang.Rd
9f92e3d1e75ed40bcf223673bcb08074 *man/diversify_abc.Rd
6bc1b0ef5daf2a6eb5763225389bb821 *man/diversify_b_terms.Rd
d617b608b399e9af1dd05ae630332cd6 *man/diversify_c_paths.Rd
58484d3b81417289f0696e3f4c64c4ab *man/dot-dict_cache_env.Rd
a4d4c22ed8db9170716d605182939c19 *man/dot-pubmed_cache_env.Rd
8547f4d19b521078ead8bc3d84230fb8 *man/enhance_abc_kb.Rd
2babcb5a2e62a1036874deace457d85b *man/eval_evidence.Rd
e364011676655fa7caa2f35d7d2887b0 *man/export_chord.Rd
4e373e0f4a9e4a4c62ca394eda8b1927 *man/export_chord_diagram.Rd
9211f8e3c77b76b7f0109cf396f12244 *man/export_network.Rd
703d025e19e7218cf3d8a35312f3d3bd *man/extract_entities.Rd
5bcd40ba44d4a3254016767ac70a1a86 *man/extract_entities_workflow.Rd
f76b70f7229e096fce19058b00d184ce *man/extract_mesh_from_text.Rd
a50683238a985fa96eb819bc072e3d25 *man/extract_ner.Rd
88f65246bafd4cec224028b878a187cd *man/extract_ngrams.Rd
95c693ca363b545482b0496a80da33f9 *man/extract_terms.Rd
2acd7e1d52819f6d3248ebbb4a9b69e4 *man/extract_topics.Rd
dbbc4aca45528d056fbba5f307f3c5e7 *man/fetch_and_parse_gene.Rd
067cfbd33aff8d8ed117bbe99f51ac1c *man/fetch_and_parse_pmc.Rd
b81e0dd550c96205c8e6404108879a0b *man/fetch_and_parse_protein.Rd
bc98b49f57dd0747b1cdad28968020b6 *man/fetch_and_parse_pubmed.Rd
6db96502cdc34718d06764b25156d224 *man/figures/logo.png
6f1db157c7794c602f716af6ddd37db7 *man/filter_by_type.Rd
38f2bbcba412e149e1fd4fe5c888efd4 *man/find_abc_all.Rd
6cf01c27a9281eacd2d20243c413960f *man/find_similar_docs.Rd
9e614f4e14041cdd1a3547f3332d6bd9 *man/find_term.Rd
462ee2c34013c94b0be3b9aa70db92ec *man/gen_report.Rd
c4bead7d7460c5d849a052a0df92602c *man/get_dict_cache.Rd
c4c3d16365714ea28ce9db4b1819f025 *man/get_pmc_fulltext.Rd
00726fcfbfc97c6dc01a8da751e5dab7 *man/get_pubmed_cache.Rd
f3034efd42b098fac9b57ad2db5b1a62 *man/get_service_ticket.Rd
68fc0a84196e6ed14f0f92a2eaf591b6 *man/get_term_vars.Rd
9d99896376656bbc4fd7741486f1cd12 *man/get_type_dist.Rd
fa7667855528d96596584901a3a84d9e *man/get_umls_semantic_types.Rd
63560969427f0a0978f25b4b0f6e9618 *man/is_valid_biomedical_entity.Rd
2302426f459b0611410ed31a80f3b2e0 *man/list_to_df.Rd
75c6069ee2b1bb9bf71e8bb5cb98f756 *man/load_dictionary.Rd
62370b4d5095f2f52409c2675a37073d *man/load_from_mesh.Rd
34f9592b1a7098c4ff9a8432fd4e4687 *man/load_from_umls.Rd
dc0e6274c12bc56ee9b013f6d8f0768e *man/load_mesh_terms_from_pubmed.Rd
97e5fdbbcaf18c8e2610821d78e6ebd2 *man/load_results.Rd
a70fd9ac958d290dbce72460f00fa62a *man/lsi_model.Rd
a0767857a6172472b691041c341a56d4 *man/map_ontology.Rd
4b322b24ee10d2373c17aebed3eeb135 *man/merge_entities.Rd
58c6aea82e769efc5886bd29933c7884 *man/merge_results.Rd
2860dabefd9c5be18ffe232db1326a17 *man/min_results.Rd
9c1b3f51c97fc21df775ad2889be6fcf *man/ncbi_search.Rd
bfafaa6833207138c2a229f333b563e1 *man/null_coalesce.Rd
b74111109503475bc862ac93783434e6 *man/parallel_analysis.Rd
a39c8f2688c734759abe35ad8384de22 *man/parse_pubmed_xml.Rd
0e2768a82511811f5c1bae8b104fcbe2 *man/perm_test_abc.Rd
e2a7746c1a789de8771f3b61108efdb2 *man/plot_heatmap.Rd
3a4602d518013c73a868b244ea79c356 *man/plot_network.Rd
635f55d12bd4e1ab48dcf44750c8dbe2 *man/prep_articles.Rd
3e0d6336f3fe0af34a08769d4cc5e523 *man/preprocess_text.Rd
bea86c524b3ae700c47d033e999e7374 *man/process_mesh_chunks.Rd
f425c9338a13109860e12785ddb5f1dd *man/process_mesh_xml.Rd
f1a0003ad166db2996bbccc4d9054f38 *man/pubmed_search.Rd
771856a27a2d6ab4acbbd683cb6b99f3 *man/query_external_api.Rd
1f29a34f39b449311f38c92892a36aed *man/query_mesh.Rd
97921cf00343452f45545074198245c5 *man/query_umls.Rd
56accd9f422d30dec5da2fa670a3dd72 *man/remove_ac_terms.Rd
c54dcee43e6bdfabae500d89f9388443 *man/retry_api_call.Rd
9e4fd64ef5d8b15f1d82bd9b77384a54 *man/run_lbd.Rd
0c965b10f84a462384371a76a1e9b788 *man/safe_diversify.Rd
3f34c50571f954f8f6a21c81dc3759a4 *man/sanitize_dictionary.Rd
2f5578491ee16e6fcc81d56d8c1945c4 *man/save_results.Rd
a6fec919fdfa3aa450b04a96f9c6a9a6 *man/segment_sentences.Rd
dcec910f1faef3ef1a9dec88f8bab703 *man/shadowtext.Rd
ae16d770896788b545e382bc0ec2108b *man/standard_validation.Rd
846986d3ba48a942f4b63af644db9b6d *man/valid_entities.Rd
eee15e8066d6a10aa650bd7fcebb304f *man/validate_abc.Rd
8dd5f061c3f1174c0b7b88e14fb5c6cd *man/validate_biomedical_entity.Rd
176b5b42d97494f14c9d8684a61e9348 *man/validate_entity_comprehensive.Rd
608d4864baa33233860ee22cf117c1cd *man/validate_entity_with_nlp.Rd
ee17e482e9d08faa1216d46c95ae338a *man/validate_umls_key.Rd
d2ff0858d0404dd456bcc5a1458e1744 *man/vec_preprocess.Rd
0bfc940cd20cc99773eb9643aeb37ce9 *man/vis_abc_heatmap.Rd
7b548dd9383b876b396a0fdb1163b348 *man/vis_heatmap.Rd
e2766ff25498f3416c31827cdeeb6960 *man/vis_network.Rd
07a9937ba6eaa629e9e0c2a188668433 *man/visualize_abc_network.Rd
8416ec13be89d89c27824ed1b5e0f4f7 *tests/testthat.R
f95aef2390795967ba2b9d1c45b84d68 *tests/testthat/Rplots.pdf
e6b63ab0cb6c5372f748675e6cd52e1d *tests/testthat/test-abc_model.R
9427734a51d18bd8beba8f81635a5f96 *tests/testthat/test-alternative_models.R
e83eb71ca7380548b25379a2d88fcf7e *tests/testthat/test-chord.R
562083dde994eb0da1e6aae6bf0e0c3f *tests/testthat/test-clustering_similarity.R
5d0b665d340d7b59492ce39a81e1c47b *tests/testthat/test-heatmap.R
10edd4f112f438c616268db428d470c3 *tests/testthat/test-queries.R
52179617236a3ca90fb55e02208a891f *tests/testthat/test-report.R
ebeaedae3e4a28fb582dfeb841c55813 *tests/testthat/test-visualization.R
