b09a0bfc8cd3c9ef61b5a1f8942ec5a6 *DESCRIPTION
c82f9831e3dfd206a6c439127911bd79 *LICENSE
fb2a8a29789eff452c59e593771a2c7a *NAMESPACE
4c54f4cda602a852de95e8e275184b38 *NEWS.md
266ceca576998378dacc5d20f5fc9f03 *R/HybridFinder.R
5df17c5d55a75e4a1e1e4fd0d529fd12 *R/checknetMHCpan.R
4cc5d978772ec6ffc8488720bdf12633 *R/cis_parallel.R
469d3c10dfcc518848e6e0c31ae78a2d *R/convert_cis_positions_list_into_df.R
1e2a361ac119329df510e0dbd78b12b9 *R/create_spliced_non_cis_peptides.R
8af21cf4424db73e0750b3408400c7e2 *R/create_spliced_peptides.R
a5412f9f36174f5b86288931b89203fe *R/create_tmp_directory.R
7f79af147eee14abc25e952fca07497e *R/db_Human_Liver_AUTD17.R
db8c4b9d8332a5dcaa1e82f8816c91ef *R/db_rerun_Human_liver_AUTD17.R
af9a1505148c10f8a6fb91b10727810e *R/denovo_Human_Liver_AUTD17.R
23217ce76bf4d262f4ec67a097d417b5 *R/export_HybridFinder_results.R
5a733af454528df2b94ac2f6a2f67375 *R/export_checknetmhcpan_results.R
f93feb6f49d1fa551567b576b7724ffe *R/export_step2_results.R
60443d5e18c7b5b3960545124f95f52b *R/find_cis_spliced_peptides.R
69b979c25904e914ae02d025686f0e66 *R/find_cis_spliced_peptides_parallel.R
8670c9c7813a474fa2ebbfe17083cac8 *R/find_cis_start_positions.R
ad50f6353dee7d8ea8ab3b4d8f1e4897 *R/find_linear_peptides.R
45447b20685c2c41183893265318cf06 *R/find_linear_peptides_parallel.R
11f6179215b534f2746ab3695c6bfa55 *R/find_trans_spliced_peptides.R
1e9c418055b82ac7b6cfe7721c38c5ec *R/find_trans_spliced_peptides_parallel.R
21f24ca434cc3842d0605323241d2222 *R/get_detailed_cis_positions.R
92a1f9c2b0874c8dd2c491739b5b2250 *R/linear_parallel.R
d8b15633fe7158f3bd1a3da5a9e53a52 *R/load_data_for_checking_examples.R
bd0f0f96d51a1c11ff0df06d88e03390 *R/make_fake_HF_proteins.R
e43c3b41d8cf9a65c2ce2bfe8a8c7986 *R/mhc_check.R
52e6c8d146ca2e9902e1e4a6520e9feb *R/netmhcpan_call.R
51794e73c15a33d3aef9aeb516a0fb77 *R/netmhcpan_list_alleles.R
e6aeeb9b3657afeeed9e2e79573dab16 *R/peptide_rerun_cleanup.R
ef904bc3bfcfb2e2a2ab38aecd098a96 *R/prepare_input_for_HF.R
0dd2b20d93f3bb00bedb7b3405985641 *R/read_nmhcp_file.R
6610998490a73c276ba59924b3738e83 *R/search_for_cis_spliced_peptides.R
41c89d7a44f4b67bb6835d6d5576ae85 *R/search_for_linear_peptides.R
a21b34574f440b5a76d953519bd543c0 *R/search_for_trans_spliced_peptides.R
9b002fceca755a5b373a63b9eb36c82f *R/step2_wo_netMHCpan.R
7d1f46578b7c597c81feac2d47ff56be *R/sysdata.rda
3a1b6a58663403dc645b5302e4be73a9 *R/trans_parallel.R
4f9d93c5baba8d0fe52b6def09ad2dce *build/vignette.rds
2c8fc629c5456c9e8af7d85013eba2b4 *data/db_Human_Liver_AUTD17.rda
b4957f973008d9a1401bc022576ddcb7 *data/db_rerun_Human_Liver_AUTD17.rda
9e009339f62f592c4ab8e2f01cc6086c *data/denovo_Human_Liver_AUTD17.rda
a9be71acaa31d6455906b8e0ff048537 *inst/doc/RHybridFinder.R
9a8fec400cb9ef712b0c51fb08dea9e7 *inst/doc/RHybridFinder.Rmd
89d8037b4cc18dd00bc56bcabb0d6d06 *inst/doc/RHybridFinder.html
aa7b1028631029433580b23d7400f077 *man/HybridFinder.Rd
152d42df1a19b82862fa6ebc7b57cc5d *man/checknetMHCpan.Rd
04fc489bd52b045813e2d4ada7c914af *man/db_Human_Liver_AUTD17.Rd
4da2da8ba49f147f691c2810bf035b69 *man/db_rerun_Human_Liver_AUTD17.Rd
2e91a35188fe05d46d4e6c6ce8510cac *man/denovo_Human_Liver_AUTD17.Rd
620ec03517a801c354e93dd00e9d927f *man/export_checknetmhcpan_results.Rd
465dade5ad48bb3641e4df77d6497f9f *man/export_results.Rd
ae0e04db107bab8a200080199fd4eb33 *man/export_step2_results.Rd
730ff32103a1330661e584aec89aff87 *man/mhc_check.Rd
1a9acf5816989be59771370203908769 *man/netmhcpan_list_alleles.Rd
527abe4a91ce764d176788c5e2023aad *man/step2_wo_netMHCpan.Rd
9a8fec400cb9ef712b0c51fb08dea9e7 *vignettes/RHybridFinder.Rmd
