491a44468bceee4c4f633dbc619812f2 *DESCRIPTION
098765ce3e5ed615b2f20fdbbc95928b *LICENSE
be4a3ab5b0324beaf1c124bc09ba243c *NAMESPACE
1a75c7204ddc86c7d05ddb8a6eacbaac *NEWS.md
94df7707c1cb263f74c0081fa3addc47 *R/RcppExports.R
e00fe6bd5e1a0627f2d284269cc83972 *R/data.R
e0c8871281b6ab41e2291cc634e21915 *R/gam_utils.r
22b5b2ee9984934139ab1dffdd9183cc *R/selectX_create.r
7545f6d313cf471ae03065c658fb4319 *R/selectX_plot.R
ea5e10c232e79e3350fb4cc8b9505c10 *R/selectX_run.R
861012bf5e8f2e5fe55690a6910a00d1 *R/selectX_stats.r
c10623fe7db4ca33edca5f132190458c *README.md
d84aedf407feca0ceed62edba9afb69d *build/vignette.rds
fc1301fabc497dd0e3d38f598dbd70c1 *data/luad_maf.rda
bf38752feedaf066f9652c34a231bb21 *data/luad_result.rda
092c7bd5d2389fdda455f120e81b7a04 *data/luad_run_data.rda
7268561b89b46d9f2232c532d6ef6bdb *data/oncokb_genes.rda
d57eafdc2f54a0966f05cc99b9343591 *data/oncokb_truncating_genes.rda
77696d255067f586482b0ce3297c099f *data/variant_catalogue.rda
2e3ff9d907b7042f9a96f0df86f4e05e *inst/CITATION
f14ce03d4df99497d8c47d767237c986 *inst/WORDLIST
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9c8a7808ea307344df24f33d97029e1d *man/al.pairwise.alteration.stats.Rd
daf8b17530a7f5e8187cc1578d24c08c *man/al.stats.Rd
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13dbbb17e49fc9f55e7e8f0437d535ac *man/am.pairwise.alteration.overlap.Rd
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f84daa2600d49f19304c371524fcb091 *man/binary.yule.Rd
7455347a8c0d99c2768d72ac80509041 *man/effectSize.Rd
33fddfd091987837d997d74d87c4e845 *man/estimateFDR2.Rd
9183b47df7f27a14125e08fe3f0db403 *man/estimate_p_val.Rd
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f04a0454b2b7675761dd813b0fc70876 *man/filter_maf_complex.Rd
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9619ff0d7786dc0e42a139880e2efc24 *man/filter_maf_ignore.Rd
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db27f29145b160404d0198aa430cebaf *man/filter_maf_sample.Rd
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f623f0e4526c2ca7cfb223d9d55ebcb9 *man/filter_maf_truncating.Rd
c0767be57ce279aa5e403e527694989a *man/generateS.Rd
4faea563c06c781e7e336408267d402e *man/generateW_block.Rd
d872a518e50f325d0b2ab9594b865fa2 *man/generateW_mean_tmb.Rd
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5a606bc019b39e94dfd7d8a46fea6b00 *man/interaction.table.Rd
281655ee7063f2fa11fa982867bdccf1 *man/luad_maf.Rd
72381dadb0f03d9029d6f07debfeb9f6 *man/luad_result.Rd
5763cb86480df2574ed1a2dd3990643c *man/luad_run_data.Rd
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a4e3867322a9581d31a2147afe7f2443 *man/new.ALS.Rd
3a650a5d1e75e05813cab0ee839acaa8 *man/new.AMS.Rd
0bfd293bfa4592313cd1d2fc33e9823c *man/null_model_parallel.Rd
7b7289fb5851afd303ce3074d652472d *man/obs_exp_scatter.Rd
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9d1f3943975b4a754d88d9f95cf6114b *man/overlap_pair_extract.Rd
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65245e10c47c1ae1a2da8df2b9a78929 *man/retrieveOutliers.Rd
de623e65096d0486c1042c6915027b8f *man/ridge_plot_ed.Rd
39132f32025a13fc66079ab5c2c19b43 *man/ridge_plot_ed_compare.Rd
212c2d07e3f02fa99cbc473e4490ba41 *man/selectX.Rd
789a8a0ec4dc5a99c01a0353a4edd2bd *man/stat_maf_column.Rd
2abdd0e48ceaf39336ef37f35aa82372 *man/stat_maf_gene.Rd
0a5967739c406b8119280d1455b9fa26 *man/stat_maf_sample.Rd
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383ae0a9d293d104547adb084b3d7443 *man/theme_Publication.Rd
fe8a30fb00a58873e468b093d40e2021 *man/variant_catalogue.Rd
65126d84bb3a0779958edd430b83b447 *man/w.r.am.pairwise.alteration.overlap.Rd
c89d6b95d18721894ab45341d0fbc7a6 *src/Makevars
c89d6b95d18721894ab45341d0fbc7a6 *src/Makevars.win
ddf1328a15b5e906cd885d3bd37433c5 *src/RcppExports.cpp
5601f1c9b5fa90608b4adf85d9e0ed14 *src/code.cpp
c1728df7d5e7e0880e394df08422a790 *tests/testthat.R
3e0273751448d58ef7ac0788f5849762 *tests/testthat/test-gam_utils.R
357c900d24dfbbee74e4921fb46013f2 *tests/testthat/test-selectX_run.R
67fb16289f8d967f127fffa2c6c6999a *vignettes/SelectSim_method.png
b1488415a30bc111da5ee346244c1c81 *vignettes/data_processing.Rmd
753a6455730009498127ece7fd9219bd *vignettes/doc.css
1d7dc4c859cdcef9514a65aaa7669f47 *vignettes/introduction.Rmd
