c864b291c1c8862895ff90856f679ce2 *DESCRIPTION
ad461c179235589d0838381acdca66be *NAMESPACE
5b02951472056c512c952b0191029e7c *R/analyze.rwty.R
f90c951a6608c1b0376cabbf13e596ce *R/check.chains.R
71682cf4eb7b803382f7bf0d3004a1c1 *R/clade.freq.R
e7cb1ec3d2b042274dc17e5a4e8e9e97 *R/combine.ptables.R
1ee0e6e27f17f654b917892e6767339a *R/cumulative.freq.R
85e77edd1dd9be9c383ba8b2bc2cd3ad *R/estimate.autocorr.m.R
c04176155baeaac6d787bedfff80f54b *R/fungus.R
9c5d78e97c1d60029da7585c52935174 *R/load.multi.R
c7070a2965828215239080da2e660cef *R/load.trees.R
bd1056b390c6dddcc7a11931548bd265 *R/makeplot.acsf.cumulative.R
b09eea0f593741fc4ab2b189c1dce21c *R/makeplot.acsf.sliding.R
4ac9a1c0e3bfffc0e2e5c01dd7a2311c *R/makeplot.all.params.R
9ef3cd98d8c8162af2d015a2450095b8 *R/makeplot.asdsf.R
5937e93ee13d84bb0f57b7e3812332b8 *R/makeplot.autocorr.R
b157affe4d00b2923f9f955e76a71689 *R/makeplot.pairs.R
fe88ab5c178e5524cad9209f06551dee *R/makeplot.param.R
88d07be8d0442103faa81420c1c5ffb9 *R/makeplot.pseudo.ess.R
14bf82892ae7fe012e8781ff716c222b *R/makeplot.splitfreq.matrix.R
2e233d9464f3e48b873ebc11175fb3de *R/makeplot.splitfreqs.cumulative.R
e3fc24edfc7d36558446ca91cd9cc0da *R/makeplot.splitfreqs.sliding.R
6f2128e21214cd378b78ba5478c9e58f *R/makeplot.topology.R
e63008bd1be299c40f281ebb92778c2d *R/makeplot.treespace.R
04385ae135cbc2dbbc64b86648a73b0c *R/parse.clades.R
1a69f373365764885fca927b1a75e121 *R/parse.slide.clades.R
74896efb7073262489bf5e192bd96168 *R/print.rwty.chain.R
b1589ccd797926edad926ba89bde2a97 *R/salamanders.R
4c03b2530d57a3fc5af7adf72d63bb4d *R/slide.freq.R
0cb6885bccd4e91414827c8e9fe87404 *R/topological.approx.ess.R
b9e06366e2060940dd4e12d66e72bd34 *R/topological.autocorr.R
5a3664162de86bcf40b7d45949fadb72 *R/topological.pseudo.ess.R
d52d1765fb33030e95ca353aecd8e5ee *R/tree.dist.matrix.R
c28a0f0a1852d39c4d2ddfb18af493f9 *R/treespace.R
959cc6ea6bb73ab02a885af52cef36d7 *README.md
59f1d4b797c34088ef0a0cc9549da4a1 *data/datalist
6c50140f7aef2f04bdd0d93683d90c66 *data/fungus.RData
3d96aceb3b6c941f700eceaacd581d99 *data/salamanders.RData
68b7720b7030f583db077bf16b0d80b9 *inst/CITATION
be62089d54a4e17d812a5d3758d187c7 *inst/report.template.Rmd
7b1559d9076441dc6416bc8b77df7158 *man/analyze.rwty.Rd
193feb51849b1d08b5db0bd7fa53461e *man/check.chains.Rd
afdc56a88746dc5ded3b0cf5f3b8d915 *man/clade.freq.Rd
7304b4d471cefd5e35c92dd54052d1c6 *man/combine.ptables.Rd
f0aa6884bbb70c3378c13bf14dd32e05 *man/cumulative.freq.Rd
1dce0ba34fca0f8f90d44baef2ac5a14 *man/estimate.autocorr.m.Rd
c349d01a40f3edd96bf7ec77c33bcca2 *man/fungus.Rd
76857b3b2d84ff55426899b6440f1549 *man/load.multi.Rd
9186444f13ee9c97b1af20387edb3183 *man/load.trees.Rd
ec8ccb60b5f956d145a2e7d3ae7e046e *man/makeplot.acsf.cumulative.Rd
bfc1d1effc730f57d8c1cad0d3a7f9b3 *man/makeplot.acsf.sliding.Rd
6f51ea224168494059f891969311d712 *man/makeplot.all.params.Rd
ae181afc735c74b23e47a7218fcc4188 *man/makeplot.asdsf.Rd
1f8eaee948cc10538cd1e0c7a6d73eb3 *man/makeplot.autocorr.Rd
9a82e91326f62a6e31deda03f304df83 *man/makeplot.pairs.Rd
7ad7db64231f122f6d9e54c47e79d0a8 *man/makeplot.param.Rd
6565f0d231242ef173811ae403e00fbc *man/makeplot.pseudo.ess.Rd
be028e4ddae23b5429e99d051c6f430b *man/makeplot.splitfreq.matrix.Rd
def347aee07c50d13b38c18bd7fa90f3 *man/makeplot.splitfreqs.cumulative.Rd
f98c3369f85172a5edff5f5b932c20ff *man/makeplot.splitfreqs.sliding.Rd
1aa4ba8f0bf7f0da27520f943852ec0d *man/makeplot.topology.Rd
5bb5310d6db84e46f89eb1b58b663d81 *man/makeplot.treespace.Rd
0075590c05925c55a2e6f9271aec438c *man/parse.clades.Rd
7a94e76fe80eeead59833f5309d1f7f6 *man/parse.slide.clades.Rd
7927ce4e7c1b30a8ab592794d2d9d7f9 *man/print.rwty.chain.Rd
0cc260aa7c9baaae5a2c715b819f7fca *man/salamanders.Rd
530bc5e19a0b6afae4523957704802f4 *man/slide.freq.Rd
0008dc547e71505aa9405692b724a9cb *man/topological.approx.ess.Rd
1822d6f122c204ee21f0b788093268a7 *man/topological.autocorr.Rd
ff14eb007bac9ad5be58e43525ec0029 *man/topological.pseudo.ess.Rd
5af9f3b451983f69f93baa647fbbc8c9 *man/tree.dist.matrix.Rd
c9fd90bbab3adc1a36b876e53cd6ccae *man/treespace.Rd
8a7913b8d3605bd92f5bbf0da9a3b8c6 *tests/testthat.R
9d9c9a25b728f985af19d90f9db8a9a5 *tests/testthat/test_rwty.R
