CRAN Package Check Results for Package BWGS

Last updated on 2024-02-27 12:50:32 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.2.1 11.26 82.39 93.65 NOTE
r-devel-linux-x86_64-debian-gcc 0.2.1 9.38 63.21 72.59 NOTE
r-devel-linux-x86_64-fedora-clang 0.2.1 114.31 NOTE
r-devel-linux-x86_64-fedora-gcc 0.2.1 115.39 NOTE
r-devel-windows-x86_64 0.2.1 11.00 74.00 85.00 OK
r-patched-linux-x86_64 0.2.1 11.34 81.02 92.36 OK
r-release-linux-x86_64 0.2.1 11.22 82.13 93.35 OK
r-release-macos-arm64 0.2.1 40.00 OK
r-release-macos-x86_64 0.2.1 62.00 OK
r-release-windows-x86_64 0.2.1 14.00 90.00 104.00 OK
r-oldrel-macos-arm64 0.2.1 39.00 OK
r-oldrel-windows-x86_64 0.2.1 15.00 90.00 105.00 OK

Check Details

Version: 0.2.1
Check: Rd files
Result: NOTE checkRd: (-1) bwgs.cv.Rd:27: Lost braces; missing escapes or markup? 27 | \item{geno}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded {-1, 0, 1}. Missing data are allowed and coded as NA.} | ^ checkRd: (-1) bwgs.cv.Rd:59: Lost braces; missing escapes or markup? 59 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.} | ^ checkRd: (-1) bwgs.predict.Rd:25: Lost braces; missing escapes or markup? 25 | \item{geno_train}{Matrix (n x m) of genotypes for the training population: n lines with m markers. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA.} | ^ checkRd: (-1) bwgs.predict.Rd:29: Lost braces; missing escapes or markup? 29 | \item{geno_target}{Matrix (z x m) of genotypes for the target population: z lines with the same m markers as in geno_train. Genotypes should be coded as {-1, 0, 1, NA}. Missing data are allowed and coded as NA. Other arguments are identical to those of bwgs.cv, except pop_reduct_method, nTimes and nFolds, since the prediction is run only once, using the whole training population for model estimation, then applied to the target population.} | ^ checkRd: (-1) bwgs.predict.Rd:49: Lost braces; missing escapes or markup? 49 | \item{r2}{Coefficient of linkage disequilibrium (LD). Setting 0<r2<1 if the genotypic reduction method is in {LD or ANO+LD }.} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc