CRAN Package Check Results for Package BioInstaller

Last updated on 2020-11-24 06:46:40 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.3.7 18.65 137.55 156.20 NOTE
r-devel-linux-x86_64-debian-gcc 0.3.7 12.01 103.10 115.11 NOTE
r-devel-linux-x86_64-fedora-clang 0.3.7 185.51 NOTE
r-devel-linux-x86_64-fedora-gcc 0.3.7 179.57 NOTE
r-devel-windows-ix86+x86_64 0.3.7 30.00 185.00 215.00 NOTE
r-patched-linux-x86_64 0.3.7 14.78 133.05 147.83 NOTE
r-patched-solaris-x86 0.3.7 222.40 ERROR
r-release-linux-x86_64 0.3.7 12.92 132.64 145.56 NOTE
r-release-macos-x86_64 0.3.7 NOTE
r-release-windows-ix86+x86_64 0.3.7 24.00 142.00 166.00 NOTE
r-oldrel-macos-x86_64 0.3.7 NOTE
r-oldrel-windows-ix86+x86_64 0.3.7 19.00 140.00 159.00 NOTE

Check Details

Version: 0.3.7
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'GRCh37_MT_ensGene.txt'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64

Version: 0.3.7
Check: installed package size
Result: NOTE
     installed size is 11.7Mb
     sub-directories of 1Mb or more:
     doc 2.5Mb
     extdata 8.7Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-ix86+x86_64, r-patched-solaris-x86, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.3.7
Check: tests
Result: ERROR
     Running ‘testthat.R’ [13s/112s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(BioInstaller)
     >
     >
     > test_check("BioInstaller")
     cloning into '/tmp/RtmpuFaiMa/working_dir/RtmptUa48H/github_demo0'...
     ── ERROR (test_install.R:12:5): install.github ─────────────────────────────────
     Error: Error in 'git2r_clone': the SSL certificate is invalid
    
     Backtrace:
     █
     1. └─BioInstaller::install.github(...) test_install.R:12:4
     2. └─BioInstaller:::git.download(...)
     3. └─git2r::clone(github_url, destdir)
    
     trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
     Content type 'text/plain; charset=utf-8' length 3131 bytes
     ==================================================
     downloaded 3131 bytes
    
     trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
     Content type 'text/plain; charset=utf-8' length 3131 bytes
     ==================================================
     downloaded 3131 bytes
    
     trying URL 'https://raw.githubusercontent.com/Miachol/ftp/master/files/GRCh37_MT_ensGene.txt'
     Content type 'text/plain; charset=utf-8' length 3131 bytes
     ==================================================
     downloaded 3131 bytes
    
     cloning into '/tmp/RtmpuFaiMa/working_dir/RtmptUa48H/github_demo3'...
     cloning into '/tmp/RtmpuFaiMa/working_dir/RtmptUa48H/github_demo'...
     cloning into '/tmp/RtmpuFaiMa/working_dir/RtmptUa48H/denpendence1'...
     /tmp/RtmpuFaiMa/working_dir/RtmptUa48H/destdir.initial not empty, overwrite?[y]
     Please input y/n/Y/N!
     /tmp/RtmpuFaiMa/working_dir/RtmptUa48H/destdir.initial not empty, overwrite?[y]
     Please input y/n/Y/N!
     /tmp/RtmpuFaiMa/working_dir/RtmptUa48H/destdir.initial not empty, overwrite?[y]
     More than 3 counts input, default is not to overwrite.
     /tmp/RtmpuFaiMa/working_dir/RtmptUa48H/destdir.initial existed, overwrite?[y]
     Please input y/n/Y/N!
     /tmp/RtmpuFaiMa/working_dir/RtmptUa48H/destdir.initial existed, overwrite?[y]
     Please input y/n/Y/N!
     /tmp/RtmpuFaiMa/working_dir/RtmptUa48H/destdir.initial existed, overwrite?[y]
     More than 3 counts input, default is not to overwrite.
     ══ testthat results ═══════════════════════════════════════════════════════════
     ERROR (test_install.R:12:5): install.github
    
     [ FAIL 1 | WARN 0 | SKIP 0 | PASS 62 ]
     Error: Test failures
     Execution halted
Flavor: r-patched-solaris-x86