Last updated on 2025-12-23 11:52:33 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.3 | 66.02 | 487.00 | 553.02 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.3 | 58.25 | 347.80 | 406.05 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.0 | 197.00 | 860.37 | 1057.37 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.0 | 205.00 | 905.03 | 1110.03 | OK | |
| r-devel-windows-x86_64 | 0.2.3 | 86.00 | 486.00 | 572.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.3 | 65.22 | 468.60 | 533.82 | ERROR | |
| r-release-linux-x86_64 | 0.2.3 | 65.31 | 469.63 | 534.94 | ERROR | |
| r-release-macos-arm64 | 0.3.0 | 23.00 | 107.00 | 130.00 | OK | |
| r-release-macos-x86_64 | 0.3.0 | 87.00 | 544.00 | 631.00 | OK | |
| r-release-windows-x86_64 | 0.2.3 | 90.00 | 475.00 | 565.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.0 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 0.3.0 | 90.00 | 817.00 | 907.00 | NOTE | |
| r-oldrel-windows-x86_64 | 0.2.3 | 89.00 | 590.00 | 679.00 | ERROR |
Version: 0.2.3
Check: examples
Result: ERROR
Running examples in ‘CAESAR.Suite-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: CAESAR.CTDEP
> ### Title: Test Cell Type Differentially Enriched Pathways
> ### Aliases: CAESAR.CTDEP
>
> ### ** Examples
>
> data(toydata)
>
> seu <- toydata$seu
> pathway_list <- toydata$pathway_list
> cts <- levels(seu)[1:2]
>
> enrich.score <- CAESAR.enrich.score(seu, pathway_list)
Calculate co-embedding distance...
Error:
! The `slot` argument of `GetAssayData()` was deprecated in SeuratObject
5.0.0 and is now defunct.
ℹ Please use the `layer` argument instead.
Backtrace:
▆
1. └─CAESAR.Suite::CAESAR.enrich.score(seu, pathway_list)
2. ├─Seurat::GetAssayData(object = seu, slot = "data", assay = assay.dist)
3. └─SeuratObject:::GetAssayData.Seurat(...)
4. └─SeuratObject::.Deprecate(...)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.3
Check: examples
Result: ERROR
Running examples in 'CAESAR.Suite-Ex.R' failed
The error most likely occurred in:
> ### Name: CAESAR.CTDEP
> ### Title: Test Cell Type Differentially Enriched Pathways
> ### Aliases: CAESAR.CTDEP
>
> ### ** Examples
>
> data(toydata)
>
> seu <- toydata$seu
> pathway_list <- toydata$pathway_list
> cts <- levels(seu)[1:2]
>
> enrich.score <- CAESAR.enrich.score(seu, pathway_list)
Calculate co-embedding distance...
Error:
! The `slot` argument of `GetAssayData()` was deprecated in SeuratObject
5.0.0 and is now defunct.
ℹ Please use the `layer` argument instead.
Backtrace:
▆
1. └─CAESAR.Suite::CAESAR.enrich.score(seu, pathway_list)
2. ├─Seurat::GetAssayData(object = seu, slot = "data", assay = assay.dist)
3. └─SeuratObject:::GetAssayData.Seurat(...)
4. └─SeuratObject::.Deprecate(...)
5. └─lifecycle::deprecate_stop(...)
6. └─lifecycle:::deprecate_stop0(msg)
7. └─rlang::cnd_signal(...)
Execution halted
Flavors: r-devel-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.3.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘scater’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64
Version: 0.3.0
Check: installed package size
Result: NOTE
installed size is 7.4Mb
sub-directories of 1Mb or more:
data 1.4Mb
libs 5.5Mb
Flavor: r-oldrel-macos-x86_64